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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000395 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052940 | Ga0031055 |
| Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 90708913 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 28 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F027205 | Metagenome | 195 | N |
| F030786 | Metagenome | 184 | N |
| F036281 | Metagenome | 170 | N |
| F041827 | Metagenome | 159 | Y |
| F042387 | Metagenome | 158 | N |
| F047127 | Metagenome | 150 | N |
| F047508 | Metagenome | 149 | N |
| F049707 | Metagenome | 146 | N |
| F059076 | Metagenome | 134 | N |
| F063777 | Metagenome | 129 | N |
| F063778 | Metagenome | 129 | Y |
| F064818 | Metagenome | 128 | N |
| F064819 | Metagenome | 128 | N |
| F071327 | Metagenome | 122 | N |
| F074985 | Metagenome | 119 | N |
| F080165 | Metagenome | 115 | N |
| F081456 | Metagenome | 114 | N |
| F090516 | Metagenome | 108 | N |
| F090517 | Metagenome | 108 | N |
| F095632 | Metagenome | 105 | N |
| F101360 | Metagenome | 102 | N |
| F103434 | Metagenome | 101 | N |
| F103436 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C2632953 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 688 | Open in IMG/M |
| C2677172 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1724 | Open in IMG/M |
| C2677932 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1810 | Open in IMG/M |
| C2680598 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2258 | Open in IMG/M |
| C2684676 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5042 | Open in IMG/M |
| SRS019077_WUGC_scaffold_13166 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 42999 | Open in IMG/M |
| SRS019077_WUGC_scaffold_19676 | All Organisms → cellular organisms → Bacteria | 16955 | Open in IMG/M |
| SRS019077_WUGC_scaffold_22199 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 4797 | Open in IMG/M |
| SRS019077_WUGC_scaffold_22650 | All Organisms → cellular organisms → Bacteria | 5511 | Open in IMG/M |
| SRS019077_WUGC_scaffold_2293 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 645 | Open in IMG/M |
| SRS019077_WUGC_scaffold_24999 | All Organisms → Viruses → Predicted Viral | 1632 | Open in IMG/M |
| SRS019077_WUGC_scaffold_31838 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 15468 | Open in IMG/M |
| SRS019077_WUGC_scaffold_32298 | All Organisms → cellular organisms → Bacteria | 3372 | Open in IMG/M |
| SRS019077_WUGC_scaffold_32621 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 6490 | Open in IMG/M |
| SRS019077_WUGC_scaffold_3672 | All Organisms → cellular organisms → Bacteria | 23305 | Open in IMG/M |
| SRS019077_WUGC_scaffold_37947 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 6608 | Open in IMG/M |
| SRS019077_WUGC_scaffold_42737 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 2185 | Open in IMG/M |
| SRS019077_WUGC_scaffold_4994 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 3230 | Open in IMG/M |
| SRS019077_WUGC_scaffold_50534 | All Organisms → cellular organisms → Bacteria | 751 | Open in IMG/M |
| SRS019077_WUGC_scaffold_56407 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 9547 | Open in IMG/M |
| SRS019077_WUGC_scaffold_60999 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1038 | Open in IMG/M |
| SRS019077_WUGC_scaffold_61623 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 11132 | Open in IMG/M |
| SRS019077_WUGC_scaffold_62117 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 871 | Open in IMG/M |
| SRS019077_WUGC_scaffold_66589 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis | 2594 | Open in IMG/M |
| SRS019077_WUGC_scaffold_66629 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1157 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C2632953 | C2632953__gene_156818 | F081456 | MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVALFVKLVITAIGALFAAMTVILYTISAE |
| C2677172 | C2677172__gene_173142 | F063778 | QKLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED |
| C2677932 | C2677932__gene_173470 | F101360 | VRKEDALRRAVIAAHVAKVASQEKKKALKELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKIPAPWFVAATSLDGFIKQTGEIPDGVELVTPDPRISARVSPAQEEAIRELITMGDISLIEIENTE |
| C2680598 | C2680598__gene_174683 | F081456 | LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTSIAFFAKLVMTAIGFLLCAITVILYTISAE |
| C2684676 | C2684676__gene_176733 | F049707 | MGNYLPRSSVVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKIN |
| SRS019077_WUGC_scaffold_13166 | SRS019077_WUGC_scaffold_13166__gene_14826 | F101360 | MSKEDALRRAVVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQADAIQELIASGDIRMIEVGGD |
| SRS019077_WUGC_scaffold_19676 | SRS019077_WUGC_scaffold_19676__gene_22821 | F064818 | MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFTQNSFQLSHYYYGFPIMTNNDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK |
| SRS019077_WUGC_scaffold_22199 | SRS019077_WUGC_scaffold_22199__gene_26449 | F027205 | VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK |
| SRS019077_WUGC_scaffold_22650 | SRS019077_WUGC_scaffold_22650__gene_27073 | F041827 | MKHFLSALALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRYSYDNGSTDNDYPNGVGIHARSHNDPTYDEYLYEISADRSYIKEE |
| SRS019077_WUGC_scaffold_2293 | SRS019077_WUGC_scaffold_2293__gene_2014 | F090517 | LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQAN |
| SRS019077_WUGC_scaffold_24999 | SRS019077_WUGC_scaffold_24999__gene_30176 | F027205 | ILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK |
| SRS019077_WUGC_scaffold_24999 | SRS019077_WUGC_scaffold_24999__gene_30177 | F036281 | MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPKFIYRNRELFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTITNEKGHQSYDWVLKDVEWAADTIRYF |
| SRS019077_WUGC_scaffold_24999 | SRS019077_WUGC_scaffold_24999__gene_30178 | F074985 | MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYKQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVF |
| SRS019077_WUGC_scaffold_31838 | SRS019077_WUGC_scaffold_31838__gene_39401 | F047127 | MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDSDIREILEKYNSK |
| SRS019077_WUGC_scaffold_32298 | SRS019077_WUGC_scaffold_32298__gene_40027 | F030786 | MLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC |
| SRS019077_WUGC_scaffold_32621 | SRS019077_WUGC_scaffold_32621__gene_40613 | F063777 | LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEISISE |
| SRS019077_WUGC_scaffold_3672 | SRS019077_WUGC_scaffold_3672__gene_3582 | F080165 | MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYFIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR |
| SRS019077_WUGC_scaffold_37947 | SRS019077_WUGC_scaffold_37947__gene_48043 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFIKMKVRISTETIVSEENLDIERSDLEDLMRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSVNFSFQTDLNGIVTFSKEISQEIEKCK |
| SRS019077_WUGC_scaffold_39550 | SRS019077_WUGC_scaffold_39550__gene_50292 | F059076 | MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPIHNMSILTLTIENVDGDWISSFDTGIDHKKYAVAIMSAFFKLPAKSGNDLVMLTGNTGVPNAKNGTLDSPTSARIAPPTVILKKAGNNWAIEADYDNMTPEKFEKNKPERGVSSNVNGSWVISLLVGRRDAINFTELNFNQGGSSIGNGPGNSTYTTQLQNFLQKLE |
| SRS019077_WUGC_scaffold_42737 | SRS019077_WUGC_scaffold_42737__gene_54924 | F042387 | MKRIILFFMAGFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGYFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTRLNIDNQAVTTMVYEYNK |
| SRS019077_WUGC_scaffold_4994 | SRS019077_WUGC_scaffold_4994__gene_5153 | F071327 | MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSFFKLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRLIFG |
| SRS019077_WUGC_scaffold_50534 | SRS019077_WUGC_scaffold_50534__gene_66303 | F047508 | AIATDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRSIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
| SRS019077_WUGC_scaffold_56407 | SRS019077_WUGC_scaffold_56407__gene_75257 | F095632 | MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSIKKPSTN |
| SRS019077_WUGC_scaffold_60999 | SRS019077_WUGC_scaffold_60999__gene_82794 | F018385 | MMADLINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQLGYCRVACPREKKILCFNWVNWTAYMFSHDGMNELVLMPDARRRTVSQLSFDNVPVKEV |
| SRS019077_WUGC_scaffold_61623 | SRS019077_WUGC_scaffold_61623__gene_83931 | F090516 | MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETEDYYEEHELYSQVKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQKHLAKFLAFCGVEQDVIDENTERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK |
| SRS019077_WUGC_scaffold_62117 | SRS019077_WUGC_scaffold_62117__gene_84776 | F018385 | MSGTETMMAENVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK |
| SRS019077_WUGC_scaffold_66589 | SRS019077_WUGC_scaffold_66589__gene_93521 | F103434 | MVTFRPRRGRYLENGPHAVEVTVAVVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKGTENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTVAK |
| SRS019077_WUGC_scaffold_66629 | SRS019077_WUGC_scaffold_66629__gene_93599 | F103436 | MITTSKDGWCSKSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |