NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000396

7000000396: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005



Overview

Basic Information
IMG/M Taxon OID7000000396 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052941 | Ga0031115
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size125418609
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1
Not Available1
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F045567Metagenome152N
F051211Metagenome144N
F066860Metagenome126N
F070224Metagenome123N
F076191Metagenome118N
F081456Metagenome114N
F094006Metagenome106Y
F095630Metagenome105N
F095632Metagenome105N
F098763Metagenome103N
F101360Metagenome102N
F103431Metagenome101N
F103434Metagenome101N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4262722All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria562Open in IMG/M
C4332294All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria964Open in IMG/M
C4366505Not Available2090Open in IMG/M
C4373548All Organisms → Viruses3575Open in IMG/M
SRS049268_LANL_scaffold_15977All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes19194Open in IMG/M
SRS049268_LANL_scaffold_18913All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis4093Open in IMG/M
SRS049268_LANL_scaffold_31090All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3679Open in IMG/M
SRS049268_LANL_scaffold_31771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales30578Open in IMG/M
SRS049268_LANL_scaffold_41639All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis13333Open in IMG/M
SRS049268_LANL_scaffold_46261All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1429Open in IMG/M
SRS049268_LANL_scaffold_52587All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1942Open in IMG/M
SRS049268_LANL_scaffold_52930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia16552Open in IMG/M
SRS049268_LANL_scaffold_6729All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria8821Open in IMG/M
SRS049268_LANL_scaffold_6881All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes26779Open in IMG/M
SRS049268_LANL_scaffold_69770All Organisms → cellular organisms → Bacteria2392Open in IMG/M
SRS049268_LANL_scaffold_71088All Organisms → cellular organisms → Bacteria11261Open in IMG/M
SRS049268_LANL_scaffold_74735All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4597Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4262722C4262722__gene_187347F066860KQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
C4332294C4332294__gene_215093F103431MIDLDALVVRMLFFIQLFLQGIAWRVAIAHFLYAERRNAAAAAFDGAFGENIADCHAEDDNDKNTESQKEGFHVCIPRG
C4366505C4366505__gene_229546F076191MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
C4373548C4373548__gene_233161F105377VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKSIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD
SRS049268_LANL_scaffold_15977SRS049268_LANL_scaffold_15977__gene_17128F101360MNKEDALRRAAVAAHIAKVASQEKKRALAELEEVMAPGDTSRPMIDGNQIGTVSVSIPAPKYQVVNEKALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISAAQAEAIQELIASGDIRMIEVGDD
SRS049268_LANL_scaffold_18913SRS049268_LANL_scaffold_18913__gene_20552F045567MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR
SRS049268_LANL_scaffold_31090SRS049268_LANL_scaffold_31090__gene_35325F098763MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTTVDE
SRS049268_LANL_scaffold_31771SRS049268_LANL_scaffold_31771__gene_36260F081456KGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAMTVILYTISAE
SRS049268_LANL_scaffold_41639SRS049268_LANL_scaffold_41639__gene_49316F022002RTISGFTLGVTTPAEARAIIQLQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLRSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEN
SRS049268_LANL_scaffold_46261SRS049268_LANL_scaffold_46261__gene_55805F094006MRGTLEPTGPTGALYESTVCVEAHIGYLQAGSIARLALFAFGGRHLLAVAEFGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNFGA
SRS049268_LANL_scaffold_52587SRS049268_LANL_scaffold_52587__gene_64933F095630MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDITLTAKTYGDTCFMDAKFHNPEAQDAYNEALRLFDKRDIPGSAALRAAAECGIEMNRLVTELVQDKLLHKLSSVQSSAWRQQSDITYRKADDKSSVNTLFCMPYIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVIQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGEGWLKMADNKLIGQILKAIEIDVYDI
SRS049268_LANL_scaffold_52930SRS049268_LANL_scaffold_52930__gene_65408F103434VVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALRATENRVIRGDLTDETTLKIFGTGRKWPGGPHSWVKIVKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS049268_LANL_scaffold_6729SRS049268_LANL_scaffold_6729__gene_6706F095630MRYSPLYKTSKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRVQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKRITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSHNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS049268_LANL_scaffold_6881SRS049268_LANL_scaffold_6881__gene_6901F095632MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMQTPSTN
SRS049268_LANL_scaffold_69770SRS049268_LANL_scaffold_69770__gene_92688F051211MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHVLSLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS049268_LANL_scaffold_71088SRS049268_LANL_scaffold_71088__gene_95373F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGRKIRTRDWVKVDYSNRNNLIIIGFGDSSVIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSLGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEAYHPGICIIH
SRS049268_LANL_scaffold_71088SRS049268_LANL_scaffold_71088__gene_95374F070224MKRLLFLLLTLLHCSAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKADYSNQNNLIVRKVGGSLIIENRFAYYAAGFPEMEEYELYYKGTGEEITKEDFDAIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHLHLFVVEHDKKADRYYKYRIALVIYMDYDHPGICIIH
SRS049268_LANL_scaffold_74735SRS049268_LANL_scaffold_74735__gene_104654F101360MSKENALRKAAIAAHIAKVASQEKKKALTELEEYMAPGDTSKPMVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIESGDA
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