Sample 7000000400

Overview

Basic Information
IMG/M Taxon OID	7000000400 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052945 \| Ga0031282
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764083206
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	118302205
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F066860	Metagenome	126	N
F068942	Metagenome	124	N
F077404	Metagenome	117	N
F089056	Metagenome	109	N
F092230	Metagenome	107	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F046432

Metagenome

151

F047508

Metagenome

149

F051211

Metagenome

144

F054109

Metagenome

140

F057446

Metagenome

136

F061926

Metagenome

131

F061927

Metagenome

131

F066860

Metagenome

126

F068942

Metagenome

124

F077404

Metagenome

117

F089056

Metagenome

109

F092230

Metagenome

107

F105376

Metagenome

100

F105378

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
C5090744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	503	Open in IMG/M
C5108791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	549	Open in IMG/M
C5132307	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	627	Open in IMG/M
C5142282	Not Available	670	Open in IMG/M
C5147522	Not Available	697	Open in IMG/M
C5155934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	746	Open in IMG/M
C5170612	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	856	Open in IMG/M
C5172564	Not Available	874	Open in IMG/M
C5174194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	889	Open in IMG/M
C5198931	Not Available	1254	Open in IMG/M
C5200095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1282	Open in IMG/M
C5202523	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1348	Open in IMG/M
C5218466	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2180	Open in IMG/M
C5225874	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3923	Open in IMG/M
SRS019071_WUGC_scaffold_15555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270	685	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C5090744

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

503

Open in IMG/M

C5108791

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

549

Open in IMG/M

C5132307

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

627

Open in IMG/M

C5142282

Not Available

670

Open in IMG/M

C5147522

Not Available

697

Open in IMG/M

C5155934

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

746

Open in IMG/M

C5170612

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga

856

Open in IMG/M

C5172564

Not Available

874

Open in IMG/M

C5174194

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron

889

Open in IMG/M

C5198931

Not Available

1254

1282

1348

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

2180

Open in IMG/M

C5225874

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

3923

Open in IMG/M

SRS019071_WUGC_scaffold_15555

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270

685

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C5090744	C5090744__gene_129012	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFAHGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAED
C5108791	C5108791__gene_138321	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C5132307	C5132307__gene_150726	F061927	MKNPIFILSAMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIEKKP
C5142282	C5142282__gene_156283	F054109	SKKGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVERDEKSEV
C5147522	C5147522__gene_159210	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK
C5155934	C5155934__gene_163905	F092230	MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVRNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAITIGYYSYLKPETVY
C5170612	C5170612__gene_172640	F089056	LLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKERIVFMYYINSCCDNGQLLEECDVSFISITFTNKNEILFGKGIQ
C5172564	C5172564__gene_173878	F068942	MIRKILSLPTLALCFTLGSALFAGCNEEEYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPK
C5174194	C5174194__gene_174897	F077404	MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMI
C5198931	C5198931__gene_191356	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVS
C5200095	C5200095__gene_192213	F061927	MKNSIFILSVMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMKKLNESLSNDEIVDISMDNSPKDLDERIDKAISSCIGE
C5202523	C5202523__gene_194005	F061926	IFIFGNLDYICVRYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNNFYILPEKPQAEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C5218466	C5218466__gene_207881	F057446	MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINIESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR
C5225874	C5225874__gene_217120	F046432	MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAEDEISKYLFGFY
SRS019071_WUGC_scaffold_15555	SRS019071_WUGC_scaffold_15555__gene_14464	F047508	IGEHLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP

Scaffold ID

Protein ID

Family

Sequence

C5090744

C5090744__gene_129012

F066860

MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFAHGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAED

C5108791

C5108791__gene_138321

F051211

MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS

C5132307

C5132307__gene_150726

F061927

MKNPIFILSAMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIEKKP

C5142282

C5142282__gene_156283

F054109

SKKGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVERDEKSEV

C5147522

C5147522__gene_159210

F105376

MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK

C5155934

C5155934__gene_163905

F092230

MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVRNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAITIGYYSYLKPETVY

C5170612

C5170612__gene_172640

F089056

LLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKERIVFMYYINSCCDNGQLLEECDVSFISITFTNKNEILFGKGIQ

C5172564

C5172564__gene_173878

F068942

MIRKILSLPTLALCFTLGSALFAGCNEEEYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPK

C5174194

C5174194__gene_174897

F077404

MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMI

C5198931

C5198931__gene_191356

F105378

MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVS

C5200095

C5200095__gene_192213

F061927

MKNSIFILSVMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMKKLNESLSNDEIVDISMDNSPKDLDERIDKAISSCIGE

C5202523

C5202523__gene_194005

F061926

IFIFGNLDYICVRYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNNFYILPEKPQAEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS

C5218466

C5218466__gene_207881

F057446

MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINIESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR

C5225874

C5225874__gene_217120

F046432

MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAEDEISKYLFGFY

SRS019071_WUGC_scaffold_15555

SRS019071_WUGC_scaffold_15555__gene_14464

F047508

IGEHLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000400: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764083206

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences