Sample 7000000405

Basic Information
IMG/M Taxon OID	7000000405 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052950 \| Ga0031314
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000405 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052950 | Ga0031314

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	81329638
Sequencing Scaffolds	17
Novel Protein Genes	20
Associated Families	18

Dataset Contents

Total Genome Size

81329638

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F047127	Metagenome	150	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F071326	Metagenome / Metatranscriptome	122	Y
F072446	Metagenome	121	N
F078842	Metagenome	116	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F103433	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2811984	Not Available	699	Open in IMG/M
C2826901	Not Available	896	Open in IMG/M
C2837264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1166	Open in IMG/M
C2841086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1352	Open in IMG/M
C2841246	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
C2854579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12001	Open in IMG/M
SRS024277_LANL_scaffold_19586	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	15945	Open in IMG/M
SRS024277_LANL_scaffold_28142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4651	Open in IMG/M
SRS024277_LANL_scaffold_28238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1215	Open in IMG/M
SRS024277_LANL_scaffold_32168	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	809	Open in IMG/M
SRS024277_LANL_scaffold_3877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1450	Open in IMG/M
SRS024277_LANL_scaffold_49988	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1423	Open in IMG/M
SRS024277_LANL_scaffold_50882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1494	Open in IMG/M
SRS024277_LANL_scaffold_51491	Not Available	721	Open in IMG/M
SRS024277_LANL_scaffold_56027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5270	Open in IMG/M
SRS024277_LANL_scaffold_62288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1414	Open in IMG/M
SRS024277_LANL_scaffold_64334	All Organisms → cellular organisms → Bacteria	3956	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2811984	C2811984__gene_130363	F071326	RSVERSNKFYKATLKTIKAQLAMLGTKFIVLRPKENSKWKNVFGGSYSSDSTLENDYDEFTTTLIINQNEMKDVWNRNRDSVEAITNDGSLEVGDELQYTRDKRTYRFKITLKQGYSETGDTLFSYTLMSIIETLDM
C2826901	C2826901__gene_134952	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
C2837264	C2837264__gene_138387	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVEADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGENFDGLSRFRQLLERE
C2841086	C2841086__gene_139605	F080165	KILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C2841246	C2841246__gene_139662	F046432	MWEMTENKLSEIISKYQLPEGRYLVVEEGSFGESEFFWVIKNESTNKKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRKIETLELASDADDEISKYLFGMYSIFEIKS
C2854579	C2854579__gene_144683	F103433	MFVMKEWSKNKPGVVFFFAVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGIAASVFTVMLSFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS024277_LANL_scaffold_19586	SRS024277_LANL_scaffold_19586__gene_23707	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMDLGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIITIDCEDTRSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELP
SRS024277_LANL_scaffold_19586	SRS024277_LANL_scaffold_19586__gene_23716	F032313	MYRFLILLFALTLMACDNDTPQEKPREQKKHEVPVSKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSTPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGSGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
SRS024277_LANL_scaffold_19586	SRS024277_LANL_scaffold_19586__gene_23717	F032313	MYRFLILLFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS024277_LANL_scaffold_28142	SRS024277_LANL_scaffold_28142__gene_34841	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVSGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWGRYPLETLQKESNILFEGSMLPCEACGVDPRCSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQRIGGLRDLLVTPDVSETDHLQTPREEGTDLLQLMGIIARKYQLFHTFVS
SRS024277_LANL_scaffold_28142	SRS024277_LANL_scaffold_28142__gene_34842	F040149	VAYEGAEELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAINDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS024277_LANL_scaffold_28238	SRS024277_LANL_scaffold_28238__gene_34970	F089055	LKVEKMSSTPECVTKTPEIEARKKEARKELAAIFPDAKRYDDNSGVKPKLGEAAVDGKDIKNIIKVNSADNGAVDFCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR
SRS024277_LANL_scaffold_32168	SRS024277_LANL_scaffold_32168__gene_39977	F043235	KRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS024277_LANL_scaffold_3877	SRS024277_LANL_scaffold_3877__gene_4118	F041827	LLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHRSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIENVTVYEKSHNDPTHNNDLYSVSPARFYTKEK
SRS024277_LANL_scaffold_49988	SRS024277_LANL_scaffold_49988__gene_63297	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKDEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFD
SRS024277_LANL_scaffold_50882	SRS024277_LANL_scaffold_50882__gene_64485	F047127	PVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS024277_LANL_scaffold_51491	SRS024277_LANL_scaffold_51491__gene_65290	F054109	MVGRPKSKEGVKVHTAFKIYPDDKARVQAMADKLDLSLSSYINKAVLEKVE
SRS024277_LANL_scaffold_56027	SRS024277_LANL_scaffold_56027__gene_71605	F054109	MVGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDLSLSSYINKAVLEKVE
SRS024277_LANL_scaffold_62288	SRS024277_LANL_scaffold_62288__gene_82297	F095633	MGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPVLKKYPDGKLYPTREAYVISAIDIDANGSQEVDFNIIYGGLN
SRS024277_LANL_scaffold_64334	SRS024277_LANL_scaffold_64334__gene_87591	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVISEDEILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDVYEVNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000405: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences