NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 7000000406

7000000406: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063



Overview

Basic Information
IMG/M Taxon OID7000000406 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052951 | Ga0031088
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size89347988
Sequencing Scaffolds19
Novel Protein Genes22
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F040149Metagenome162N
F041827Metagenome159Y
F043235Metagenome156N
F043991Metagenome155N
F047508Metagenome149N
F054111Metagenome140N
F059076Metagenome134N
F061925Metagenome131N
F061927Metagenome131N
F063778Metagenome129Y
F064818Metagenome128N
F074985Metagenome119N
F090517Metagenome108N
F094006Metagenome106Y
F101358Metagenome102Y
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2360782All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales739Open in IMG/M
C2378979All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium978Open in IMG/M
SRS024381_LANL_scaffold_10711All Organisms → cellular organisms → Bacteria2328Open in IMG/M
SRS024381_LANL_scaffold_11672All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes858Open in IMG/M
SRS024381_LANL_scaffold_20904All Organisms → Viruses → Predicted Viral2945Open in IMG/M
SRS024381_LANL_scaffold_29645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1945Open in IMG/M
SRS024381_LANL_scaffold_31484All Organisms → cellular organisms → Bacteria1637Open in IMG/M
SRS024381_LANL_scaffold_33792All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2109Open in IMG/M
SRS024381_LANL_scaffold_35377All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1671Open in IMG/M
SRS024381_LANL_scaffold_45543All Organisms → Viruses → Predicted Viral4957Open in IMG/M
SRS024381_LANL_scaffold_47123All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium515Open in IMG/M
SRS024381_LANL_scaffold_47314All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1550Open in IMG/M
SRS024381_LANL_scaffold_57406All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales9475Open in IMG/M
SRS024381_LANL_scaffold_57899All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis4849Open in IMG/M
SRS024381_LANL_scaffold_6847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4083Open in IMG/M
SRS024381_LANL_scaffold_71051All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii881Open in IMG/M
SRS024381_LANL_scaffold_71654All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales4241Open in IMG/M
SRS024381_LANL_scaffold_71727All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3777Open in IMG/M
SRS024381_LANL_scaffold_8385All Organisms → cellular organisms → Bacteria1520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2360782C2360782__gene_149341F059076TLTIKNSTSNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
C2378979C2378979__gene_154992F041827HFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRSYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
SRS024381_LANL_scaffold_10711SRS024381_LANL_scaffold_10711__gene_10820F101358MTEKYSASLSPRQEHLLTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDKGWIDIEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPATDTTCDYQQPRATNR
SRS024381_LANL_scaffold_11672SRS024381_LANL_scaffold_11672__gene_11896F018385MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
SRS024381_LANL_scaffold_20904SRS024381_LANL_scaffold_20904__gene_22465F074985MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTEEIKDLENIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS024381_LANL_scaffold_20904SRS024381_LANL_scaffold_20904__gene_22466F036281MFSIIRVSEGPVDIYELRMRYLAKLKETDGVMLPTFIYRNKSLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYDAQEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSSDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNAKGHQSYDWVLENVEWAADTIRYF
SRS024381_LANL_scaffold_20904SRS024381_LANL_scaffold_20904__gene_22467F027205VASRLIVSADDILKAVKDSEEFEKKALSEARKRDRAEGKPPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPKRIRK
SRS024381_LANL_scaffold_29645SRS024381_LANL_scaffold_29645__gene_33437F063778LMPETISEEAKQELLRHLQDALGLVKNADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED
SRS024381_LANL_scaffold_31484SRS024381_LANL_scaffold_31484__gene_35659F061925MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLNDCDTDEEVTLEHIFHSVI
SRS024381_LANL_scaffold_33792SRS024381_LANL_scaffold_33792__gene_38586F061927MKNSIFILSAMFILGACSSDSAQKVTEKIKNTYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
SRS024381_LANL_scaffold_35377SRS024381_LANL_scaffold_35377__gene_40723F064818MNKDEFLKELIAFIADNSSELHPKVFKNKIWFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS024381_LANL_scaffold_45543SRS024381_LANL_scaffold_45543__gene_54559F043991MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDDGTEVSFYKGRNLIYSDILFSGGIRTTLFKCRQKKNLTRFISRVLELAQGESSNIHPDFRA
SRS024381_LANL_scaffold_47123SRS024381_LANL_scaffold_47123__gene_56818F101359KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS024381_LANL_scaffold_47314SRS024381_LANL_scaffold_47314__gene_57087F059076MTNRILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE
SRS024381_LANL_scaffold_57406SRS024381_LANL_scaffold_57406__gene_71422F040149VADEGAKELRWEVLIEEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
SRS024381_LANL_scaffold_57899SRS024381_LANL_scaffold_57899__gene_72157F043235MDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH
SRS024381_LANL_scaffold_6847SRS024381_LANL_scaffold_6847__gene_6694F018385MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPRDGKILCFSWFDWDAHMFMHDGINELVFAPKLNSKSPQSLWNKKEVK
SRS024381_LANL_scaffold_6847SRS024381_LANL_scaffold_6847__gene_6698F043991MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPEIVYGDILFAEGVRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS024381_LANL_scaffold_71051SRS024381_LANL_scaffold_71051__gene_96561F090517MNRRIFSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTWESKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL
SRS024381_LANL_scaffold_71654SRS024381_LANL_scaffold_71654__gene_98563F047508MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYASCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS024381_LANL_scaffold_71727SRS024381_LANL_scaffold_71727__gene_98860F094006MWSALEPAGPTGALYEPAVCVEAHIGYLQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS024381_LANL_scaffold_8385SRS024381_LANL_scaffold_8385__gene_8416F054111MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNLKEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLFLETEALSTADRDLFLNILNKEILFLI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.