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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000430 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052980 | Ga0027942 |
| Sample Name | Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763435843 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18115405 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027205 | Metagenome | 195 | N |
| F036281 | Metagenome | 170 | N |
| F054109 | Metagenome | 140 | N |
| F074985 | Metagenome | 119 | N |
| F077405 | Metagenome | 117 | N |
| F103436 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C851955 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 3565 | Open in IMG/M |
| SRS015799_WUGC_scaffold_10744 | All Organisms → cellular organisms → Bacteria | 32308 | Open in IMG/M |
| SRS015799_WUGC_scaffold_1220 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 1053 | Open in IMG/M |
| SRS015799_WUGC_scaffold_8013 | All Organisms → Viruses → Predicted Viral | 3629 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C851955 | C851955__gene_34229 | F103436 | MIVTSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGGRRYVAAVDLLDENEVYFSKEDWPYYALGIEILKARKYTYFY |
| SRS015799_WUGC_scaffold_10744 | SRS015799_WUGC_scaffold_10744__gene_15094 | F054109 | MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQVMAEKLDISLSSYINKAVLEKLAHDEKSEA |
| SRS015799_WUGC_scaffold_1220 | SRS015799_WUGC_scaffold_1220__gene_1260 | F077405 | LPTELFPRLLVAKQRGVFYGFISWCQIKFVKKFFD |
| SRS015799_WUGC_scaffold_8013 | SRS015799_WUGC_scaffold_8013__gene_9944 | F027205 | VASRLIVSADDILKAVEESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK |
| SRS015799_WUGC_scaffold_8013 | SRS015799_WUGC_scaffold_8013__gene_9945 | F036281 | MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWSAREGKPAPFFYEARQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF |
| SRS015799_WUGC_scaffold_8013 | SRS015799_WUGC_scaffold_8013__gene_9946 | F074985 | MELTDGGWYKTPRIIKGTDFLAHIHDTYGSGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTIDKCPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQFWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |