NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000432

7000000432: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445



Overview

Basic Information
IMG/M Taxon OID7000000432 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052982 | Ga0031353
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size90274742
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 512701
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047508Metagenome149N
F051212Metagenome144N
F057446Metagenome136N
F064818Metagenome128N
F081510Metagenome114N
F089057Metagenome109N
F098763Metagenome103N
F099452Metagenome103N
F103432Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2785126All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales529Open in IMG/M
C2806608All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales629Open in IMG/M
C2810549Not Available653Open in IMG/M
C2811511All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium659Open in IMG/M
C2812975All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270669Open in IMG/M
C2844099Not Available1049Open in IMG/M
C2854741Not Available1415Open in IMG/M
SRS063193_LANL_scaffold_60943All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes39804Open in IMG/M
SRS063193_LANL_scaffold_62632All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1549Open in IMG/M
SRS063193_LANL_scaffold_7826All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas562Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2785126C2785126__gene_136740F051212KTSISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIASLSLNNNNKDWEAFIDKIDLKDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTDIQNNTTWDYITKQVMDIKYSQLYNHLNLEK
C2806608C2806608__gene_143793F057446MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYEDKKRKIDGFSQDE
C2810549C2810549__gene_145158F089057PIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDIITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLS
C2811511C2811511__gene_145493F064818VVLLPYFTYMDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLTIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIF
C2812975C2812975__gene_145973F047508FDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGIAEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP
C2844099C2844099__gene_156544F103432MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHPLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
C2854741C2854741__gene_160356F099452MDKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYKDIINLDDVSLLTDLRKTDWYKDWFTDDRNNANLINLSRFNFKTLARFEKEEYLRDAEHYDFEGVIEVDSYGLFDTLIEDKDVELFKLAAENILINHGFFHNTDYNFYDVPDEYMEDKEVCAYMCLLNIGNMDFVDKKTLDTTVLYNIVKDRICGS
SRS063193_LANL_scaffold_60943SRS063193_LANL_scaffold_60943__gene_81303F081510MKLPKINTKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGVAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKVDTPMNQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSEMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQMHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS063193_LANL_scaffold_62632SRS063193_LANL_scaffold_62632__gene_84589F081510MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDQYSRMEVVADIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDTPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELN
SRS063193_LANL_scaffold_7826SRS063193_LANL_scaffold_7826__gene_7682F098763MDRRASLRILSPALYLATKLFEAVVRTTISYDPSDEVEGKGRMNTIPTAVDE
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