NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000443

7000000443: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615



Overview

Basic Information
IMG/M Taxon OID7000000443 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052993 | Ga0031062
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size133639245
Sequencing Scaffolds26
Novel Protein Genes28
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F043990Metagenome155N
F046432Metagenome151Y
F049707Metagenome146N
F051211Metagenome144N
F051212Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F059076Metagenome134N
F061927Metagenome131N
F063777Metagenome129N
F064819Metagenome128N
F070224Metagenome123N
F071327Metagenome122N
F077404Metagenome117N
F080165Metagenome115N
F095630Metagenome105N
F095632Metagenome105N
F097525Metagenome104N
F097526Metagenome104Y
F103430Metagenome101N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2837384All Organisms → cellular organisms → Bacteria816Open in IMG/M
C2859561All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1052Open in IMG/M
C2881633All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1620Open in IMG/M
C2893563All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2700Open in IMG/M
C2894151All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2820Open in IMG/M
C2895445All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3139Open in IMG/M
SRS058808_LANL_scaffold_14277All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae70253Open in IMG/M
SRS058808_LANL_scaffold_16319All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1037Open in IMG/M
SRS058808_LANL_scaffold_24447All Organisms → cellular organisms → Bacteria9046Open in IMG/M
SRS058808_LANL_scaffold_35184Not Available35737Open in IMG/M
SRS058808_LANL_scaffold_37471All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2316Open in IMG/M
SRS058808_LANL_scaffold_48300All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2106Open in IMG/M
SRS058808_LANL_scaffold_49781All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum4656Open in IMG/M
SRS058808_LANL_scaffold_54500All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1128Open in IMG/M
SRS058808_LANL_scaffold_56437All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2691Open in IMG/M
SRS058808_LANL_scaffold_5901All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga5507Open in IMG/M
SRS058808_LANL_scaffold_62720All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2859Open in IMG/M
SRS058808_LANL_scaffold_67596All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium685Open in IMG/M
SRS058808_LANL_scaffold_68586Not Available4842Open in IMG/M
SRS058808_LANL_scaffold_7039All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales564Open in IMG/M
SRS058808_LANL_scaffold_70572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1608Open in IMG/M
SRS058808_LANL_scaffold_72139All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1912Open in IMG/M
SRS058808_LANL_scaffold_73274All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes9384Open in IMG/M
SRS058808_LANL_scaffold_75617All Organisms → Viruses → Predicted Viral2493Open in IMG/M
SRS058808_LANL_scaffold_76285All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria29854Open in IMG/M
SRS058808_LANL_scaffold_76290All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes10947Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2837384C2837384__gene_210336F061927MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE
C2859561C2859561__gene_219469F077404SGSLPKGTYSDWKYKNPFAMNILKTVFAFFFALCFIRGANGYAQKIESINAEASKRELKRNAIYIPPALEQYTDTTLLHQKFNVENKDNYLYTPFTKDNEPSIPFNYGFLHPLDERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKMADLKYLDFRHIKSDFSYGHPYQGFTHSDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMIDSVAVNFDTEVLPYIKGVFRFNRVQ
C2881633C2881633__gene_229344F097525IMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE
C2893563C2893563__gene_235185F095632MTMSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN
C2894151C2894151__gene_235517F095630MRYSPLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCCMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKRDELMPNLRILQSSEWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSNKLFSECVLEYSVDEEHIKSPIDQALAAIVVQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFAAYIQYLLKLPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
C2895445C2895445__gene_236192F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQILTLKILIIALASALLFEYAYPWRLIFG
SRS058808_LANL_scaffold_14277SRS058808_LANL_scaffold_14277__gene_15273F097526MTKGFIPGAGDMTADNTTAIAPYTQDGYRLLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVALEPVVTLQAAEQPEITIHNPTTGATL
SRS058808_LANL_scaffold_16319SRS058808_LANL_scaffold_16319__gene_17716F097525MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAIIIKELGEAVASFKKV
SRS058808_LANL_scaffold_24447SRS058808_LANL_scaffold_24447__gene_27964F051211MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVFLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHKRHVILRVFIEGSTYDIDPSIDIGLASTLPIAHWDSTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYIAIDKWLADTRAHQSS
SRS058808_LANL_scaffold_35184SRS058808_LANL_scaffold_35184__gene_42301F103430MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLDQEAIAYQIENDLQLI
SRS058808_LANL_scaffold_37471SRS058808_LANL_scaffold_37471__gene_45319F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEVVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS058808_LANL_scaffold_48300SRS058808_LANL_scaffold_48300__gene_60329F063777LKVLNIKISALPPENNSFWMRLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKISKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQENIGNYILLQNLILEDNQLKNQLISFDKNTGKMRVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE
SRS058808_LANL_scaffold_49781SRS058808_LANL_scaffold_49781__gene_62465F071327MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
SRS058808_LANL_scaffold_54500SRS058808_LANL_scaffold_54500__gene_69192F057446SISFGKTTITSYPEYFEIVDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESRIEKSKIKEIVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS058808_LANL_scaffold_56437SRS058808_LANL_scaffold_56437__gene_71861F080165MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTRYILR
SRS058808_LANL_scaffold_5901SRS058808_LANL_scaffold_5901__gene_5452F054111MVFNNLEKESMNKPMDSITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
SRS058808_LANL_scaffold_62720SRS058808_LANL_scaffold_62720__gene_81047F059076MTNRILLLGLLLGGISTNAQTINEINAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVGSAMDADLGGNTATSTSYTDYRPLMVDAVGDVYRGLPINNMSILTLTISNVKGDWIASFDTGIDYDKYAVAIMSATFKMPAPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGQLVNGTWVITLLVGKRDAVNFTELEFPQGGANSGIGTSNPTYRAGLESFLQKLE
SRS058808_LANL_scaffold_67596SRS058808_LANL_scaffold_67596__gene_89279F057446MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNEFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEAEQIIKF
SRS058808_LANL_scaffold_68586SRS058808_LANL_scaffold_68586__gene_91153F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILENGIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLIVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI
SRS058808_LANL_scaffold_68586SRS058808_LANL_scaffold_68586__gene_91154F022002MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFDDLKILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELERAYSAENENEI
SRS058808_LANL_scaffold_68586SRS058808_LANL_scaffold_68586__gene_91155F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI
SRS058808_LANL_scaffold_7039SRS058808_LANL_scaffold_7039__gene_6800F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVVNKKNITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSKLNNHLNLEK
SRS058808_LANL_scaffold_70572SRS058808_LANL_scaffold_70572__gene_95138F059076MTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE
SRS058808_LANL_scaffold_72139SRS058808_LANL_scaffold_72139__gene_98575F043990MKKKIFIFTVVCILPVVIILPIINNKIECYGIERNFGVNMSDIGFNEKYREEEWAPNGDGKKIIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDGDFGILIVDLKNKEICIYYQIF
SRS058808_LANL_scaffold_73274SRS058808_LANL_scaffold_73274__gene_101233F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIIGFGDTLILENGFVYKADRYPNAKEYELYYKGTGEEITKEDFNSIKFSRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEAKMIH
SRS058808_LANL_scaffold_75617SRS058808_LANL_scaffold_75617__gene_108402F105377VRSEVRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS058808_LANL_scaffold_76285SRS058808_LANL_scaffold_76285__gene_112695F046432MQMTENELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
SRS058808_LANL_scaffold_76290SRS058808_LANL_scaffold_76290__gene_112785F049707VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWHFRLDDGRIMTFRALEWEQKDDVNHLTTIYFVPKEKRDS

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