NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000466

7000000466: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136



Overview

Basic Information
IMG/M Taxon OID7000000466 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053017 | Ga0031124
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size164804937
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F033081Metagenome178Y
F045567Metagenome152N
F049707Metagenome146N
F051211Metagenome144N
F051212Metagenome144N
F051214Metagenome144N
F068942Metagenome124N
F076191Metagenome118N
F085821Metagenome111N
F089056Metagenome109N
F095632Metagenome105N
F101358Metagenome102Y
F101359Metagenome102N
F103431Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4164529Not Available511Open in IMG/M
C4166297Not Available514Open in IMG/M
C4196447All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium584Open in IMG/M
C4219558All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium658Open in IMG/M
C4281975All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1121Open in IMG/M
C4306309All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1823Open in IMG/M
C4314557All Organisms → Viruses → Predicted Viral2471Open in IMG/M
SRS063603_LANL_scaffold_104127All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2978Open in IMG/M
SRS063603_LANL_scaffold_13622All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3634Open in IMG/M
SRS063603_LANL_scaffold_20674Not Available622Open in IMG/M
SRS063603_LANL_scaffold_26113All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris813Open in IMG/M
SRS063603_LANL_scaffold_37050All Organisms → Viruses → Predicted Viral1280Open in IMG/M
SRS063603_LANL_scaffold_3721All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes529Open in IMG/M
SRS063603_LANL_scaffold_43257All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1400Open in IMG/M
SRS063603_LANL_scaffold_66217All Organisms → cellular organisms → Bacteria → Proteobacteria8756Open in IMG/M
SRS063603_LANL_scaffold_98673All Organisms → Viruses44466Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4164529C4164529__gene_238759F068942MIRKILSLPTLALCFTLCTALFAGCGENYEGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDIPEVDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQ
C4166297C4166297__gene_239462F068942MIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSSISFSNNVSTLDTFTRHDFSKVDKDTAYYKDIVIYLTRNEREQTTTLKLVAPPNRTQQ
C4196447C4196447__gene_250776F101359KNLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK
C4219558C4219558__gene_259486F101358MTKKHSAPLPPQQEHLLTQPITMDGMPKERTTHPDTHIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNTYLQKAYGVMIKDGRLQPVADTTHVTTSSQEQQTEILPAQGGDTYEHLSRDSAR
C4281975C4281975__gene_283913F103431MINLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGEDIADCHAEDDNDKNAESQKEGFHVCIPEG
C4306309C4306309__gene_294061F045567MVTEDVVHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG
C4314557C4314557__gene_297618F076191MKIITENPAEEALLWRIKALSDELVDQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDDA
SRS063603_LANL_scaffold_101239SRS063603_LANL_scaffold_101239__gene_129543F022002IILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS063603_LANL_scaffold_104127SRS063603_LANL_scaffold_104127__gene_135865F033081MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML
SRS063603_LANL_scaffold_13622SRS063603_LANL_scaffold_13622__gene_12665F101358MTEKHSASLPPRQPEHLLTQPITTDGTPQERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREITDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNVDFTNAYLQKAYGVMMEGGKLQPVADTTHATTSSQEQQTEVLPAQGEDAHDHLGGDSARQLVGSVAAKASGGEMDNSPLVQRALERVR
SRS063603_LANL_scaffold_20674SRS063603_LANL_scaffold_20674__gene_20233F085821MNGIFERLAALAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTKRQILEQDNGKHDEAYIDAWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLY
SRS063603_LANL_scaffold_26113SRS063603_LANL_scaffold_26113__gene_25948F089056MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTTEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS063603_LANL_scaffold_37050SRS063603_LANL_scaffold_37050__gene_37965F051214ELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
SRS063603_LANL_scaffold_3721SRS063603_LANL_scaffold_3721__gene_2710F018385MADLINSWLPYQELSIEKDRDPVLDDPIIYGNNVKNFTVTVYSPDGRVSKYWNARILKDLTGYCRIACPRDGKILNFNWFNWTVYMFSQSGMNALVFMPDSGKRTVTSLSKEVK
SRS063603_LANL_scaffold_43257SRS063603_LANL_scaffold_43257__gene_45096F051212LHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDKKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWNYITKQVIDIKYSKLYNHLNLEK
SRS063603_LANL_scaffold_66217SRS063603_LANL_scaffold_66217__gene_74499F051211MRVKKAIRIFEKIRNLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTAAMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS063603_LANL_scaffold_98673SRS063603_LANL_scaffold_98673__gene_124275F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLSETIDSLQTSQTN
SRS063603_LANL_scaffold_98673SRS063603_LANL_scaffold_98673__gene_124295F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIDRKEN
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