 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000484 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053035 | Ga0030496 |
| Sample Name | Human stool microbial communities from NIH, USA - visit 1, subject 764447348 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 123555670 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055775 | Metagenome | 138 | N |
| F068855 | Metagenome | 124 | N |
| F078004 | Metagenome | 117 | N |
| F090484 | Metagenome | 108 | N |
| F099406 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C1236716 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 764 | Open in IMG/M |
| SRS016018_WUGC_scaffold_12766 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 7456 | Open in IMG/M |
| SRS016018_WUGC_scaffold_2404 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae | 22391 | Open in IMG/M |
| SRS016018_WUGC_scaffold_3221 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 10356 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C1236716 | C1236716__gene_123752 | F068855 | SKCPSSSVPTVEAQGPQVRKSLAPQGLQAEKESEDVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW |
| C1265884 | C1265884__gene_135807 | F078004 | LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVL |
| SRS016018_WUGC_scaffold_12766 | SRS016018_WUGC_scaffold_12766__gene_36442 | F099406 | MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLKSLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSESDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRAVTTLVNLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA |
| SRS016018_WUGC_scaffold_2404 | SRS016018_WUGC_scaffold_2404__gene_7535 | F055775 | MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKEISHARVVSWLVDTTGDSPKYTIHIINANSEAVAAIALN |
| SRS016018_WUGC_scaffold_3221 | SRS016018_WUGC_scaffold_3221__gene_10488 | F090484 | ITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |