NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000501

7000000501: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809



Overview

Basic Information
IMG/M Taxon OID7000000501 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053053 | Ga0031100
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33564287
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047127Metagenome150N
F049707Metagenome146N
F051212Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F061927Metagenome131N
F063778Metagenome129Y
F067847Metagenome125N
F071329Metagenome122N
F081456Metagenome114N
F081510Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1066329All Organisms → cellular organisms → Bacteria543Open in IMG/M
C1068929All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales568Open in IMG/M
C1076598All Organisms → cellular organisms → Bacteria667Open in IMG/M
C1080127All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes734Open in IMG/M
C1090704All Organisms → Viruses → Predicted Viral1164Open in IMG/M
SRS047265_WUGC_scaffold_14000All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes23161Open in IMG/M
SRS047265_WUGC_scaffold_19693All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1480Open in IMG/M
SRS047265_WUGC_scaffold_20438All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium838Open in IMG/M
SRS047265_WUGC_scaffold_22343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1204Open in IMG/M
SRS047265_WUGC_scaffold_22968All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes927Open in IMG/M
SRS047265_WUGC_scaffold_24446All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4738Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1066329C1066329__gene_54615F054111MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILNKEILFLI
C1068929C1068929__gene_55619F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGQYKKKLKALLSD
C1076598C1076598__gene_58681F061927MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE
C1080127C1080127__gene_60090F049707VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPDTGWTVWYFRLEDGRVMTFRALEWEQRDDVNHLTTIYFAPKQKENS
C1090704C1090704__gene_64557F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPGLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS047265_WUGC_scaffold_14000SRS047265_WUGC_scaffold_14000__gene_14648F081510MKLPKLPNLQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSVYAGIKSGKKLEATKAKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFGEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFNEEKQEYDLQFYVRWKTPRNLYATTSIKDFVPKKTRKELN
SRS047265_WUGC_scaffold_19693SRS047265_WUGC_scaffold_19693__gene_22993F081456YPDLGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE
SRS047265_WUGC_scaffold_20438SRS047265_WUGC_scaffold_20438__gene_24190F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYS
SRS047265_WUGC_scaffold_22343SRS047265_WUGC_scaffold_22343__gene_27422F063778MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED
SRS047265_WUGC_scaffold_22968SRS047265_WUGC_scaffold_22968__gene_28570F071329MLPVAKIIIAGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS047265_WUGC_scaffold_24446SRS047265_WUGC_scaffold_24446__gene_32080F051214MGYRSLKGAHMPGKIVAHHTHLRIDTEFIELKDCFEAFRRGVEYKEKNDIDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENITLKPIYIYNNREYQIACEFLRQILHDKIDLKKEWLV
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