NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 7000000507

7000000507: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816



Overview

Basic Information
IMG/M Taxon OID7000000507 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053059 | Ga0027964
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124725078
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F027205Metagenome195N
F036281Metagenome170N
F046431Metagenome151Y
F049707Metagenome146N
F051211Metagenome144N
F051214Metagenome144N
F071329Metagenome122N
F077403Metagenome117N
F095630Metagenome105N
F101358Metagenome102Y
F101360Metagenome102N
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3811149Not Available675Open in IMG/M
C3850385All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes993Open in IMG/M
C3871182All Organisms → Viruses → Predicted Viral1487Open in IMG/M
C3886895All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3305Open in IMG/M
C3889401All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4641Open in IMG/M
SRS018443_Baylor_scaffold_17039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1102Open in IMG/M
SRS018443_Baylor_scaffold_21453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia9103Open in IMG/M
SRS018443_Baylor_scaffold_22459All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria8252Open in IMG/M
SRS018443_Baylor_scaffold_35579All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis6222Open in IMG/M
SRS018443_Baylor_scaffold_5113All Organisms → cellular organisms → Bacteria18178Open in IMG/M
SRS018443_Baylor_scaffold_65639All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5128Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3811149C3811149__gene_184348F077403NPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLL
C3850385C3850385__gene_203848F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYEPDTGWTVWYFRLEGGEVMKFRALEWEQKDDVNHLTTIWMRPSLHDIERKEN
C3871182C3871182__gene_215622F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYSAKEYYDYWAAREGRPAPFFYEARQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C3871182C3871182__gene_215623F027205VASRLIVTADDIMRAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK
C3886895C3886895__gene_226644F018385MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTYDGLNELVFMPGSSRKTISRLYYEEVK
C3886895C3886895__gene_226645F071329MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASTIVAREVEKQFDETVKAVKEARDHIEIED
C3886895C3886895__gene_226646F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITTKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C3889401C3889401__gene_228952F022002DGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS018443_Baylor_scaffold_17039SRS018443_Baylor_scaffold_17039__gene_19352F046431IILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR
SRS018443_Baylor_scaffold_21453SRS018443_Baylor_scaffold_21453__gene_24266F051211MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS
SRS018443_Baylor_scaffold_22459SRS018443_Baylor_scaffold_22459__gene_25426F095630MYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGLFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQVFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTVYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS018443_Baylor_scaffold_35579SRS018443_Baylor_scaffold_35579__gene_40455F103434MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYAPGETFYVDKVLVQPSAGNALKATENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK
SRS018443_Baylor_scaffold_5113SRS018443_Baylor_scaffold_5113__gene_5785F101358MTEKHSASPTAKEETLAPLPPRQPEHLLTQPITVDGAPEKRATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVSLAVLQEQNLDFTNAYLQRAYGVMIKDGRLQPVADTTHATTSSQEQQTEILPAQGGDTYEHLGGDSARQLVGSVAAKASDGEVDNSLLAQRALERIR
SRS018443_Baylor_scaffold_65639SRS018443_Baylor_scaffold_65639__gene_87668F101360VNKENALRRAAIAAHVAKVASQEKKKALNELMEVMAPGDRSYATVNGEQVGAISVTTATPAYQVTDEQALVRWLEWNKPDAIHRVPAPWFTAKAALDGFIKQTGEIPDGVELVTPTPRISARVSPAQEEVIRELIAIGDISLIEIEGAE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.