Basic Information | |
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IMG/M Taxon OID | 7000000513 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053066 | Ga0031331 |
Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 111385965 |
Sequencing Scaffolds | 18 |
Novel Protein Genes | 18 |
Associated Families | 14 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 5 |
All Organisms → cellular organisms → Bacteria | 2 |
Not Available | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030786 | Metagenome | 184 | N |
F032313 | Metagenome | 180 | N |
F045567 | Metagenome | 152 | N |
F046431 | Metagenome | 151 | Y |
F046432 | Metagenome | 151 | Y |
F068942 | Metagenome | 124 | N |
F073671 | Metagenome | 120 | N |
F085820 | Metagenome | 111 | N |
F092230 | Metagenome | 107 | N |
F094007 | Metagenome | 106 | N |
F095630 | Metagenome | 105 | N |
F095633 | Metagenome | 105 | N |
F103432 | Metagenome | 101 | N |
F103433 | Metagenome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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C2388458 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 514 | Open in IMG/M |
C2419954 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 645 | Open in IMG/M |
C2450787 | All Organisms → cellular organisms → Bacteria | 901 | Open in IMG/M |
C2450981 | Not Available | 903 | Open in IMG/M |
C2461647 | Not Available | 1068 | Open in IMG/M |
C2461749 | Not Available | 1070 | Open in IMG/M |
SRS047824_WUGC_scaffold_11718 | Not Available | 701 | Open in IMG/M |
SRS047824_WUGC_scaffold_16316 | All Organisms → cellular organisms → Bacteria | 20591 | Open in IMG/M |
SRS047824_WUGC_scaffold_29144 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1436 | Open in IMG/M |
SRS047824_WUGC_scaffold_34965 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1763 | Open in IMG/M |
SRS047824_WUGC_scaffold_47808 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae | 859 | Open in IMG/M |
SRS047824_WUGC_scaffold_48706 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2085 | Open in IMG/M |
SRS047824_WUGC_scaffold_53072 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1058 | Open in IMG/M |
SRS047824_WUGC_scaffold_53433 | Not Available | 1022 | Open in IMG/M |
SRS047824_WUGC_scaffold_5440 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2260 | Open in IMG/M |
SRS047824_WUGC_scaffold_54527 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 13726 | Open in IMG/M |
SRS047824_WUGC_scaffold_55012 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 3427 | Open in IMG/M |
SRS047824_WUGC_scaffold_55945 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva | 13355 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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C2388458 | C2388458__gene_139891 | F030786 | TKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC |
C2419954 | C2419954__gene_152308 | F094007 | MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFVPDVNNYSGEDFTKRNRIIVEICDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVARLAINACEACPLKIDCELYGKLGEAVLSGVLDYKKVRTATSLTKAGKRRPGWDKGCIDNDV |
C2450787 | C2450787__gene_164603 | F045567 | MRQRDGRDTLTEKLEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR |
C2450981 | C2450981__gene_164689 | F073671 | MNKEQAEHELAELHAQERSLEKALEIVREKIRELVNYTDKNKGQK |
C2461647 | C2461647__gene_169098 | F085820 | MRSTFYLFAVLFLATTFFSCETDEPAPRARREIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEI |
C2461749 | C2461749__gene_169132 | F085820 | MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKTIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEI |
SRS047824_WUGC_scaffold_11718 | SRS047824_WUGC_scaffold_11718__gene_16480 | F032313 | MYRFLILLFAITLMACDNNTPQEKPHEQEKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK |
SRS047824_WUGC_scaffold_16316 | SRS047824_WUGC_scaffold_16316__gene_22726 | F046431 | MKRISKIGITIILILSVIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSE |
SRS047824_WUGC_scaffold_29144 | SRS047824_WUGC_scaffold_29144__gene_40180 | F095630 | MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEVQDAYNEALRLFDKWNIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDGSIVHQLKNEFMEYVQFLSASPFCGNLQVALVRCSHNYE |
SRS047824_WUGC_scaffold_34965 | SRS047824_WUGC_scaffold_34965__gene_48552 | F046431 | ISITIILILSIIISYGSVIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR |
SRS047824_WUGC_scaffold_47808 | SRS047824_WUGC_scaffold_47808__gene_69373 | F068942 | MIRKILSLPTLALCFTLCTALFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAR |
SRS047824_WUGC_scaffold_48706 | SRS047824_WUGC_scaffold_48706__gene_70963 | F046432 | MWGMTENELSEIISKYQMPEDRYSVEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEMKS |
SRS047824_WUGC_scaffold_53072 | SRS047824_WUGC_scaffold_53072__gene_79601 | F068942 | MIRKILSLPTLALCFTLCTALFAGCNENYIEGFVTKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ |
SRS047824_WUGC_scaffold_53433 | SRS047824_WUGC_scaffold_53433__gene_80510 | F103432 | MKLIHSLFSLSLLLALGGLFCTTACQDDVEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDSRGKVRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWQQP |
SRS047824_WUGC_scaffold_5440 | SRS047824_WUGC_scaffold_5440__gene_7621 | F095633 | MRNYENFTEIGRGEGLTEGELRTMGALAMKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAAQEMAAHSYEPIPVKINTKRLIATASLDDGGEMSVEERSVPEEVFIDLSRTSCVVDADRSHKSYKFTCPVLEKFPDGELYPIREVYVISAMDVNGSQEVDFKIIYGNLN |
SRS047824_WUGC_scaffold_54527 | SRS047824_WUGC_scaffold_54527__gene_83413 | F103433 | MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIIEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE |
SRS047824_WUGC_scaffold_55012 | SRS047824_WUGC_scaffold_55012__gene_84820 | F046432 | MQMSESELSEVVSKYQMPEGRYLIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRKIETLEKASDADDEIFKYLFGFYSIFEIKS |
SRS047824_WUGC_scaffold_55945 | SRS047824_WUGC_scaffold_55945__gene_89737 | F092230 | MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGIDFINKEIIVRDNAVRVDGIQCLYAVNKNKDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV |
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