NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000513

7000000513: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003



Overview

Basic Information
IMG/M Taxon OID7000000513 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053066 | Ga0031331
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size111385965
Sequencing Scaffolds18
Novel Protein Genes18
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria5
All Organisms → cellular organisms → Bacteria2
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F032313Metagenome180N
F045567Metagenome152N
F046431Metagenome151Y
F046432Metagenome151Y
F068942Metagenome124N
F073671Metagenome120N
F085820Metagenome111N
F092230Metagenome107N
F094007Metagenome106N
F095630Metagenome105N
F095633Metagenome105N
F103432Metagenome101N
F103433Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2388458All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium514Open in IMG/M
C2419954All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria645Open in IMG/M
C2450787All Organisms → cellular organisms → Bacteria901Open in IMG/M
C2450981Not Available903Open in IMG/M
C2461647Not Available1068Open in IMG/M
C2461749Not Available1070Open in IMG/M
SRS047824_WUGC_scaffold_11718Not Available701Open in IMG/M
SRS047824_WUGC_scaffold_16316All Organisms → cellular organisms → Bacteria20591Open in IMG/M
SRS047824_WUGC_scaffold_29144All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1436Open in IMG/M
SRS047824_WUGC_scaffold_34965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1763Open in IMG/M
SRS047824_WUGC_scaffold_47808All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae859Open in IMG/M
SRS047824_WUGC_scaffold_48706All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2085Open in IMG/M
SRS047824_WUGC_scaffold_53072All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1058Open in IMG/M
SRS047824_WUGC_scaffold_53433Not Available1022Open in IMG/M
SRS047824_WUGC_scaffold_5440All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2260Open in IMG/M
SRS047824_WUGC_scaffold_54527All Organisms → cellular organisms → Bacteria → Proteobacteria13726Open in IMG/M
SRS047824_WUGC_scaffold_55012All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3427Open in IMG/M
SRS047824_WUGC_scaffold_55945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Abiotrophia → Abiotrophia defectiva13355Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2388458C2388458__gene_139891F030786TKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2419954C2419954__gene_152308F094007MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFVPDVNNYSGEDFTKRNRIIVEICDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVARLAINACEACPLKIDCELYGKLGEAVLSGVLDYKKVRTATSLTKAGKRRPGWDKGCIDNDV
C2450787C2450787__gene_164603F045567MRQRDGRDTLTEKLEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2450981C2450981__gene_164689F073671MNKEQAEHELAELHAQERSLEKALEIVREKIRELVNYTDKNKGQK
C2461647C2461647__gene_169098F085820MRSTFYLFAVLFLATTFFSCETDEPAPRARREIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEI
C2461749C2461749__gene_169132F085820MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKTIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEI
SRS047824_WUGC_scaffold_11718SRS047824_WUGC_scaffold_11718__gene_16480F032313MYRFLILLFAITLMACDNNTPQEKPHEQEKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFNSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK
SRS047824_WUGC_scaffold_16316SRS047824_WUGC_scaffold_16316__gene_22726F046431MKRISKIGITIILILSVIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSE
SRS047824_WUGC_scaffold_29144SRS047824_WUGC_scaffold_29144__gene_40180F095630MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEVQDAYNEALRLFDKWNIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDGSIVHQLKNEFMEYVQFLSASPFCGNLQVALVRCSHNYE
SRS047824_WUGC_scaffold_34965SRS047824_WUGC_scaffold_34965__gene_48552F046431ISITIILILSIIISYGSVIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR
SRS047824_WUGC_scaffold_47808SRS047824_WUGC_scaffold_47808__gene_69373F068942MIRKILSLPTLALCFTLCTALFAGCGEKNDGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPAMYMFKVHQPALPAKAR
SRS047824_WUGC_scaffold_48706SRS047824_WUGC_scaffold_48706__gene_70963F046432MWGMTENELSEIISKYQMPEDRYSVEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEMKS
SRS047824_WUGC_scaffold_53072SRS047824_WUGC_scaffold_53072__gene_79601F068942MIRKILSLPTLALCFTLCTALFAGCNENYIEGFVTKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ
SRS047824_WUGC_scaffold_53433SRS047824_WUGC_scaffold_53433__gene_80510F103432MKLIHSLFSLSLLLALGGLFCTTACQDDVEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDSRGKVRDLGNYSCPLLQGKRRNVNYRTREGIFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWQQP
SRS047824_WUGC_scaffold_5440SRS047824_WUGC_scaffold_5440__gene_7621F095633MRNYENFTEIGRGEGLTEGELRTMGALAMKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAAQEMAAHSYEPIPVKINTKRLIATASLDDGGEMSVEERSVPEEVFIDLSRTSCVVDADRSHKSYKFTCPVLEKFPDGELYPIREVYVISAMDVNGSQEVDFKIIYGNLN
SRS047824_WUGC_scaffold_54527SRS047824_WUGC_scaffold_54527__gene_83413F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIIEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS047824_WUGC_scaffold_55012SRS047824_WUGC_scaffold_55012__gene_84820F046432MQMSESELSEVVSKYQMPEGRYLIEQEGSFGRGEFFWVIKNESTNKKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRKIETLEKASDADDEIFKYLFGFYSIFEIKS
SRS047824_WUGC_scaffold_55945SRS047824_WUGC_scaffold_55945__gene_89737F092230MRQAHKRMVDKLKTRLLKVFFPLFIVCIIFVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGIDFINKEIIVRDNAVRVDGIQCLYAVNKNKDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSAEVSDSSSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV

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