NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000527

7000000527: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533



Overview

Basic Information
IMG/M Taxon OID7000000527 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053081 | Ga0031283
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size87125891
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → Viruses → Predicted Viral2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F046431Metagenome151Y
F046432Metagenome151Y
F051212Metagenome144N
F054110Metagenome140N
F080164Metagenome115N
F081455Metagenome114N
F092229Metagenome107N
F099452Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C5824942All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales533Open in IMG/M
C5864709Not Available774Open in IMG/M
C5867269All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales799Open in IMG/M
C5876403All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria902Open in IMG/M
C5877527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes917Open in IMG/M
C5879679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes948Open in IMG/M
C5901969All Organisms → Viruses → Predicted Viral1493Open in IMG/M
C5908557Not Available1847Open in IMG/M
C5912839All Organisms → Viruses → Predicted Viral2227Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C5824942C5824942__gene_70295F043235EFGTQLTDALLDRPDRSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAK
C5864709C5864709__gene_94945F099452MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIIDLDDVSLLTDLRKTDWYEDWFTDDCKNADLIDLSRFNFNSLARFEKEEYLRNVERYDFEAVTPVDSYGLFDTLTKDNDVELFKLAAENILINHGFFNKTDYNFCDIPNEYMGDKEVSVYMCLLNIENMIFVDKKTLDTTILYNIVKDHICGFIYFTLFDRLNKDTRTRAR
C5867269C5867269__gene_96688F051212MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK
C5876403C5876403__gene_103053F046432MQMTENELSEVISKFQMPEGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
C5877527C5877527__gene_103891F046431VFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSNNFETIGLTDFSPEAIEEEVKVLNVYPHSKNESQSAYPGSHAFQTLPNVNVTYLDGSTETIEKPALLKVWMEGRNSK
C5879679C5879679__gene_105498F054110YRMCNTNLNRYCVVLDVNYQPMIKKLLKALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C5901969C5901969__gene_124597F092229DVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDSLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVRDIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGKFIYGTKEYKILKELRSSPLMVVLTQLTRKNDSGYILNSNLELVKG
C5908557C5908557__gene_131580F080164MVGLTLCAAPQVTLRERASAFPLITEKAPSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
C5912839C5912839__gene_136802F081455VLFKAKEKHIMETMKNLLEMENVECISNLISKCSDYINRKERNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVIDGKTKYYADIYPDLNKIDLDHHLISSAKK
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