NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000545

7000000545: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096



Overview

Basic Information
IMG/M Taxon OID7000000545 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053103 | Ga0031063
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67414479
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F030786Metagenome184N
F047127Metagenome150N
F063778Metagenome129Y
F071329Metagenome122N
F085821Metagenome111N
F092231Metagenome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2348023Not Available682Open in IMG/M
C2382417All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1699Open in IMG/M
SRS043755_WUGC_scaffold_16921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2800Open in IMG/M
SRS043755_WUGC_scaffold_19752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia586Open in IMG/M
SRS043755_WUGC_scaffold_26526All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1392Open in IMG/M
SRS043755_WUGC_scaffold_29748All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium660Open in IMG/M
SRS043755_WUGC_scaffold_45949All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8208Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2348023C2348023__gene_110977F085821MDHIFEQLAPLAETKKQQTTVSKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLK
C2382417C2382417__gene_126788F071329ARGSASETTGIMRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS043755_WUGC_scaffold_16921SRS043755_WUGC_scaffold_16921__gene_16097F063778MPETISEGAKQQLLQQLQDALGLVENADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGHLKSCADQIEYAISSIKAIPLDPPPED
SRS043755_WUGC_scaffold_19752SRS043755_WUGC_scaffold_19752__gene_19062F092231MIIFPPQEFITWANALAQFPWPIQLNDFLPYAEQLGWKPTSRPTWFNVLPDNDYALTNISSDRDGNVRNLFLPMASDETEDDEGAAELNDHFASCVVAGRKEWGEPFLLEAGDGPSVTWRFLGDMFAQVT
SRS043755_WUGC_scaffold_26526SRS043755_WUGC_scaffold_26526__gene_26829F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDHMVGDHDIREILEKYNSK
SRS043755_WUGC_scaffold_29748SRS043755_WUGC_scaffold_29748__gene_30754F030786VQMKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS043755_WUGC_scaffold_45949SRS043755_WUGC_scaffold_45949__gene_56804F027205GSVKGPRGPTLVERTHVASRLIVSADDILKAVKESEEFERNALSEARKRDRAAGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
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