NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000561

7000000561: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675



Overview

Basic Information
IMG/M Taxon OID7000000561 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053120 | Ga0031324
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59860823
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2751
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F047508Metagenome149N
F051211Metagenome144N
F067846Metagenome125Y
F071328Metagenome122N
F073671Metagenome120N
F090517Metagenome108N
F094006Metagenome106Y
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2301924All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria534Open in IMG/M
C2321547Not Available681Open in IMG/M
C2336650Not Available897Open in IMG/M
C2356028Not Available1862Open in IMG/M
SRS057355_LANL_scaffold_18987All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae592Open in IMG/M
SRS057355_LANL_scaffold_22045All Organisms → cellular organisms → Bacteria1924Open in IMG/M
SRS057355_LANL_scaffold_33617Not Available569Open in IMG/M
SRS057355_LANL_scaffold_40971All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1887Open in IMG/M
SRS057355_LANL_scaffold_44038All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275608Open in IMG/M
SRS057355_LANL_scaffold_8101All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1815Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2301924C2301924__gene_83036F051211IRDLPYGTSGSDEVWSCYQKCVLLKQELQHIDITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C2321547C2321547__gene_91447F067846MASFTAYDKEQEQYDAYERAVEMEIESIKEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDCRKGYILND
C2336650C2336650__gene_98459F047508IWEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
C2356028C2356028__gene_109046F105376MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAITELQEEVQQTVRRK
SRS057355_LANL_scaffold_18987SRS057355_LANL_scaffold_18987__gene_12936F094006MRGALEPADPTGALYESVVSEEAHIGELQAGGISRRDLFALGWSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFGEELEYAFNFGA
SRS057355_LANL_scaffold_22045SRS057355_LANL_scaffold_22045__gene_15667F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIAPFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFKGGRSMA
SRS057355_LANL_scaffold_33617SRS057355_LANL_scaffold_33617__gene_26636F073671HELAELHEKERSLEKALELVREKIRELVNYTDKNKRG
SRS057355_LANL_scaffold_40971SRS057355_LANL_scaffold_40971__gene_35529F073671HELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK
SRS057355_LANL_scaffold_44038SRS057355_LANL_scaffold_44038__gene_40847F071328MKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRQCGRHYKEYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKEYR
SRS057355_LANL_scaffold_8101SRS057355_LANL_scaffold_8101__gene_3343F090517LFLASSCKSKKDTPRLQLSSVELRQTVWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
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