NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000565

7000000565: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263



Overview

Basic Information
IMG/M Taxon OID7000000565 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053130 | Ga0031336
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size52664156
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F045567Metagenome152N
F051210Metagenome / Metatranscriptome144Y
F054110Metagenome140N
F067846Metagenome125Y
F077404Metagenome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2921109All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1435Open in IMG/M
SRS052227_LANL_scaffold_25980Not Available525Open in IMG/M
SRS052227_LANL_scaffold_3623All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales123906Open in IMG/M
SRS052227_LANL_scaffold_38464All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1372Open in IMG/M
SRS052227_LANL_scaffold_47724All Organisms → Viruses → Predicted Viral4862Open in IMG/M
SRS052227_LANL_scaffold_5343All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2206Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2921109C2921109__gene_104165F077404MVQQIIITRRLVGAALSLKEPTQIGNTKNPFAMNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYTDTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR
SRS052227_LANL_scaffold_25980SRS052227_LANL_scaffold_25980__gene_27367F067846MSIIEEWERQEFNKWDRQCSKEDDYNRAVEMEIESIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
SRS052227_LANL_scaffold_3623SRS052227_LANL_scaffold_3623__gene_1738F051210MNNYSQILGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMDVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRSVLPNLGPDQYQDVQVMGGFELPVTVNAGTAAYSPLVGRKLIPGTVRVKVEDGTGKKYELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAVPSNGTITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS052227_LANL_scaffold_38464SRS052227_LANL_scaffold_38464__gene_44812F040149VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLTAVRER
SRS052227_LANL_scaffold_47724SRS052227_LANL_scaffold_47724__gene_59747F054110VNYQPTIKKLLKALQINGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKTYKGGE
SRS052227_LANL_scaffold_5343SRS052227_LANL_scaffold_5343__gene_3684F045567MCQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKE
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