NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000575

7000000575: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214



Overview

Basic Information
IMG/M Taxon OID7000000575 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053140 | Ga0031041
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size205692047
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F033081Metagenome178Y
F040149Metagenome162N
F051211Metagenome144N
F051213Metagenome144N
F055792Metagenome138N
F063778Metagenome129Y
F064818Metagenome128N
F064819Metagenome128N
F084362Metagenome112N
F089056Metagenome109N
F095630Metagenome105N
F097526Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C5157614All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas520Open in IMG/M
C5165951All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium535Open in IMG/M
C5180511All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris563Open in IMG/M
C5259890All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria831Open in IMG/M
C5274622All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria929Open in IMG/M
C5288310All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1049Open in IMG/M
C5328778All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2057Open in IMG/M
SRS017227_Baylor_scaffold_108201Not Available542Open in IMG/M
SRS017227_Baylor_scaffold_113369All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.9951Open in IMG/M
SRS017227_Baylor_scaffold_140357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces610Open in IMG/M
SRS017227_Baylor_scaffold_157348All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1558Open in IMG/M
SRS017227_Baylor_scaffold_165812Not Available5218Open in IMG/M
SRS017227_Baylor_scaffold_42490All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis879Open in IMG/M
SRS017227_Baylor_scaffold_48675Not Available944Open in IMG/M
SRS017227_Baylor_scaffold_80226All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3290Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C5157614C5157614__gene_318771F051213MKASKFLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
C5165951C5165951__gene_321060F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLKRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGI
C5180511C5180511__gene_324906F089056VFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVITFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C5259890C5259890__gene_346179F033081MAWLFRRAMPRDTRPTFVWPNLARAIGDARYFDQRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWFVGAAGVFLIGDFTNYTSSQRSLHNAKATRCEAYNMLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGVALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML
C5274622C5274622__gene_350184F095630VYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAVIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRG
C5288310C5288310__gene_354002F051211MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDSTSNTATMVSLKHLRIYRPHSLHERILSRLRRNLFRDNPKEFYTEIDKWLADTRAHHSS
C5328778C5328778__gene_365479F095630MIYSSLYKTVENNGLIAHIYEHLLAQYVMKYLQSRGFFISSDIILTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDKWDIPGSAALRAAAECGIEMNRAVTELVQDELLHKLSVVQSSAWRQQSDITYRQADGKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPIDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKCEFMEYVQFLSASSFCNNLQAALVRCSHNYEQV
SRS017227_Baylor_scaffold_108201SRS017227_Baylor_scaffold_108201__gene_139692F055792QEEIDEVDDATERERLHRTSYAFTLSLFVERQSMEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQR
SRS017227_Baylor_scaffold_113369SRS017227_Baylor_scaffold_113369__gene_147065F097526MPKSLSGWKAMTKGFIPGAGDMTADNTTAIAPYTQDGYRQICERIGDDTVAALLHAHIRAFAADGNRALLRRLTDAMRIAAEFEQACRNEHPDPTEQERRARWDSNLAVLQQHTRMAHCEIVNADNAAVSLLTQQCEKNGSRDTAIPLSRDDYGFAAALSDLPLNTTQIALLWRMAVLTIAEITETAPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRHTARCEPESAAVMPAAVPEPVVTLQAAEQSEITNHNSTTGAPL
SRS017227_Baylor_scaffold_140357SRS017227_Baylor_scaffold_140357__gene_188301F063778GAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHPLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED
SRS017227_Baylor_scaffold_157348SRS017227_Baylor_scaffold_157348__gene_218706F051213MGIYEQGAGGDLSGGYTYTCKRKPFARRTGMHRYSCLAKQIHLMNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISHDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPDMIVTQRAK
SRS017227_Baylor_scaffold_165812SRS017227_Baylor_scaffold_165812__gene_239309F084362MSLMNCTFTVRWSDEKNKPHTKTYATEADAKRAKKWLLEHGVRDVDIAVKINNKPAGRLKDDKPSETEAEQKGFWWEK
SRS017227_Baylor_scaffold_42490SRS017227_Baylor_scaffold_42490__gene_50730F064818PKLYFTKHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNTEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS017227_Baylor_scaffold_48675SRS017227_Baylor_scaffold_48675__gene_58724F022002MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYEGCPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAEKENEI
SRS017227_Baylor_scaffold_80226SRS017227_Baylor_scaffold_80226__gene_100819F040149IPVLFVEVEAWYDGRVSSSEILRSVGVALERETRLAPVWSHDSKDAIHDFIYDTSIPKGHTLTAVRERETVVAQLLNIHRYVYYP
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