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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000576 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053141 | Ga0031303 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158499257 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 113421052 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 28 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033081 | Metagenome | 178 | Y |
| F041827 | Metagenome | 159 | Y |
| F043235 | Metagenome | 156 | N |
| F043990 | Metagenome | 155 | N |
| F054109 | Metagenome | 140 | N |
| F054111 | Metagenome | 140 | N |
| F058221 | Metagenome | 135 | N |
| F061926 | Metagenome | 131 | N |
| F064819 | Metagenome | 128 | N |
| F067846 | Metagenome | 125 | Y |
| F071326 | Metagenome / Metatranscriptome | 122 | Y |
| F071328 | Metagenome | 122 | N |
| F072445 | Metagenome / Metatranscriptome | 121 | Y |
| F072446 | Metagenome | 121 | N |
| F073671 | Metagenome | 120 | N |
| F076191 | Metagenome | 118 | N |
| F081454 | Metagenome | 114 | N |
| F081510 | Metagenome | 114 | N |
| F084362 | Metagenome | 112 | N |
| F090516 | Metagenome | 108 | N |
| F090517 | Metagenome | 108 | N |
| F092230 | Metagenome | 107 | N |
| F103430 | Metagenome | 101 | N |
| F103431 | Metagenome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C4027905 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 554 | Open in IMG/M |
| C4034506 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 580 | Open in IMG/M |
| C4036324 | Not Available | 588 | Open in IMG/M |
| C4051030 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 662 | Open in IMG/M |
| C4057360 | Not Available | 701 | Open in IMG/M |
| C4065984 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae | 767 | Open in IMG/M |
| C4076628 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 871 | Open in IMG/M |
| C4081672 | All Organisms → cellular organisms → Bacteria | 933 | Open in IMG/M |
| C4085819 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 994 | Open in IMG/M |
| C4095339 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1181 | Open in IMG/M |
| C4109070 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1710 | Open in IMG/M |
| C4110435 | Not Available | 1803 | Open in IMG/M |
| C4119473 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 3081 | Open in IMG/M |
| C4121289 | All Organisms → Viruses → Predicted Viral | 3789 | Open in IMG/M |
| C4123271 | All Organisms → cellular organisms → Bacteria | 5737 | Open in IMG/M |
| SRS022621_Baylor_scaffold_29631 | All Organisms → cellular organisms → Bacteria | 2991 | Open in IMG/M |
| SRS022621_Baylor_scaffold_4084 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 837 | Open in IMG/M |
| SRS022621_Baylor_scaffold_48975 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 12110 | Open in IMG/M |
| SRS022621_Baylor_scaffold_51256 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 6828 | Open in IMG/M |
| SRS022621_Baylor_scaffold_65606 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 804 | Open in IMG/M |
| SRS022621_Baylor_scaffold_69774 | Not Available | 3790 | Open in IMG/M |
| SRS022621_Baylor_scaffold_70190 | All Organisms → cellular organisms → Bacteria | 3536 | Open in IMG/M |
| SRS022621_Baylor_scaffold_74050 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 970 | Open in IMG/M |
| SRS022621_Baylor_scaffold_77232 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales | 2282 | Open in IMG/M |
| SRS022621_Baylor_scaffold_82621 | Not Available | 2113 | Open in IMG/M |
| SRS022621_Baylor_scaffold_84924 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 2889 | Open in IMG/M |
| SRS022621_Baylor_scaffold_84984 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040 | 4663 | Open in IMG/M |
| SRS022621_Baylor_scaffold_86191 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 5504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C4027905 | C4027905__gene_164101 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK |
| C4034506 | C4034506__gene_166181 | F103431 | DALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHTEDDNDKNAESQKKGFHVCIPEG |
| C4036324 | C4036324__gene_166766 | F054109 | MVGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDMSLSSYINKAVLEKVERDEKSEN |
| C4051030 | C4051030__gene_171313 | F090517 | MNRRILSFCGLLLGLLFLASSCKSKKDTPRLQLSSVELRQTAWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNREHHPQMDQDTWYLIRKEPSLLVFQANAGNPDREATLTLRKQL |
| C4057360 | C4057360__gene_173234 | F072445 | KFNNMATVTDLVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNNVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTLSAKFEHYSLEFKNL |
| C4065984 | C4065984__gene_176066 | F067846 | MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGNDYEEMRIKILTAMAEDRLEQLEKDYRNG |
| C4076628 | C4076628__gene_179446 | F041827 | CNRDLENNETPAPQNEKLVLLDELREGSTITFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKEE |
| C4081672 | C4081672__gene_181116 | F054111 | MNKSLESITHEEFLKLMERLKNLQEFTFLEYTIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTSDRDL |
| C4085819 | C4085819__gene_182525 | F041827 | CNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK |
| C4095339 | C4095339__gene_185753 | F058221 | MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKVGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI |
| C4109070 | C4109070__gene_190673 | F090516 | SNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPEEEKVVPTQEYLAKFLAFCGVEQDVIDENKERLLRALEEYTPDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK |
| C4110435 | C4110435__gene_191169 | F103430 | MKQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI |
| C4119473 | C4119473__gene_194917 | F061926 | MIKTAKHIKTFLASVLLLIFVMDVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS |
| C4121289 | C4121289__gene_195732 | F071326 | MAENMASRSVERSNKFYKATLKTIKAQLAMLGTKFIVLRPKENSKWKNVFGGSYSSDSTLENDYEEFTTTLIINQNDMKDVWNRNRDSVEAITNDGSLEVGDELQYTRDKRTYRFKITLKQGYSETGDTLFSYTLMSIIETLDM |
| C4123271 | C4123271__gene_196745 | F073671 | MEKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGQK |
| SRS022621_Baylor_scaffold_29631 | SRS022621_Baylor_scaffold_29631__gene_33951 | F071328 | MERMKWKFILEGECIVEFVELCKHLVLERTIDSKEPLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKKSRPFILKVLPVKRSEW |
| SRS022621_Baylor_scaffold_4084 | SRS022621_Baylor_scaffold_4084__gene_4218 | F033081 | GYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVLAIDIAKLL |
| SRS022621_Baylor_scaffold_48975 | SRS022621_Baylor_scaffold_48975__gene_58513 | F081510 | MKFDLNAVKATAKTTWVTTKILGKKYAPVILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFVPKKTRKELN |
| SRS022621_Baylor_scaffold_51256 | SRS022621_Baylor_scaffold_51256__gene_61489 | F076191 | MKIIAENPAEEALLWRIKALSDELVNQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEHHINENDHHYENPTTCIRSAHDNRELKDVIHLLILAGDNEIPSNHYGVLRDA |
| SRS022621_Baylor_scaffold_65606 | SRS022621_Baylor_scaffold_65606__gene_80350 | F092230 | MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSAEVSDSSSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV |
| SRS022621_Baylor_scaffold_69774 | SRS022621_Baylor_scaffold_69774__gene_85873 | F084362 | VRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAVRLQDSEKQAEAAAEQKGFW |
| SRS022621_Baylor_scaffold_70190 | SRS022621_Baylor_scaffold_70190__gene_86423 | F084362 | VRWSDEKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNRPAGSLEDGDKPSETEAEQKGFWWEK |
| SRS022621_Baylor_scaffold_74050 | SRS022621_Baylor_scaffold_74050__gene_91828 | F043235 | VDEFGTQLTDALLDRPDRSKRKLHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH |
| SRS022621_Baylor_scaffold_77232 | SRS022621_Baylor_scaffold_77232__gene_96792 | F054109 | MTGRPKSKKGVKVHTAFKIYPADKARAQAMANQLDLTLSAYVNKAVLEKVARDEKSED |
| SRS022621_Baylor_scaffold_82621 | SRS022621_Baylor_scaffold_82621__gene_106410 | F067846 | MESLQAQWERKTWDDYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGNDCEEMRIKILKSLAEERIEQLRKDYEKGFILDD |
| SRS022621_Baylor_scaffold_84924 | SRS022621_Baylor_scaffold_84924__gene_111407 | F081454 | MKTFKLVLLLFITSASLVFGQEKKYFFKHEFQPNSKYLIKYKTDMDGEYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYF |
| SRS022621_Baylor_scaffold_84984 | SRS022621_Baylor_scaffold_84984__gene_111544 | F072446 | MKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALTLPTIGTSPVLCGVKSIKSVGVAENGRTYDLSWEMKLRIRDYSSRRKYNSGRIVTLDCEDTESMTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER |
| SRS022621_Baylor_scaffold_86191 | SRS022621_Baylor_scaffold_86191__gene_115232 | F043990 | MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYIGDENDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |