Sample 7000000592

Overview

Basic Information
IMG/M Taxon OID	7000000592 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053163 \| Ga0031297
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	63441503
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F105378	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032313

Metagenome

180

F051211

Metagenome

144

F054109

Metagenome

140

F089055

Metagenome

109

F095633

Metagenome

105

F105378

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
C2631940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	627	Open in IMG/M
C2658687	Not Available	1092	Open in IMG/M
C2671275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2353	Open in IMG/M
C2673167	Not Available	3239	Open in IMG/M
SRS020334_Baylor_scaffold_1163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1006	Open in IMG/M
SRS020334_Baylor_scaffold_3377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	792	Open in IMG/M
SRS020334_Baylor_scaffold_43366	Not Available	3466	Open in IMG/M
SRS020334_Baylor_scaffold_43754	Not Available	2187	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C2631940

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

627

Open in IMG/M

C2658687

Not Available

1092

Open in IMG/M

C2671275

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2353

Open in IMG/M

C2673167

Not Available

3239

Open in IMG/M

SRS020334_Baylor_scaffold_1163

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

1006

Open in IMG/M

SRS020334_Baylor_scaffold_3377

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

792

Open in IMG/M

SRS020334_Baylor_scaffold_43366

Not Available

3466

Open in IMG/M

SRS020334_Baylor_scaffold_43754

Not Available

2187

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C2631940	C2631940__gene_92611	F051211	SDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C2658687	C2658687__gene_104295	F032313	MYRFLILLFALTLMACDNDTPQEKPREQKKHEVPVSKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFYSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGSGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEA
C2671275	C2671275__gene_111511	F054109	TMAGRPKTKRGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSEA
C2673167	C2673167__gene_112887	F054109	TMAGRPKTKRGMKVHTAFKIYPDDKARAQVMADKLELSLSAYINKAVLEKVERDEKSEA
SRS020334_Baylor_scaffold_1163	SRS020334_Baylor_scaffold_1163__gene_1275	F089055	VEKMNSTPKCVTETLELEAAREEIADILSDAEQRDNYKVNPELGKTAFDVANIPDNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK
SRS020334_Baylor_scaffold_3377	SRS020334_Baylor_scaffold_3377__gene_3334	F095633	MGNYENFTEVGRGEGLTEGELRTMGALAMKATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN
SRS020334_Baylor_scaffold_43366	SRS020334_Baylor_scaffold_43366__gene_48768	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS020334_Baylor_scaffold_43754	SRS020334_Baylor_scaffold_43754__gene_49671	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVN

Scaffold ID

Protein ID

Family

Sequence

C2631940

C2631940__gene_92611

F051211

SDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS

C2658687

C2658687__gene_104295

F032313

MYRFLILLFALTLMACDNDTPQEKPREQKKHEVPVSKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFYSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGSGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEA

C2671275

C2671275__gene_111511

F054109

TMAGRPKTKRGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSEA

C2673167

C2673167__gene_112887

F054109

TMAGRPKTKRGMKVHTAFKIYPDDKARAQVMADKLELSLSAYINKAVLEKVERDEKSEA

SRS020334_Baylor_scaffold_1163

SRS020334_Baylor_scaffold_1163__gene_1275

F089055

VEKMNSTPKCVTETLELEAAREEIADILSDAEQRDNYKVNPELGKTAFDVANIPDNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK

SRS020334_Baylor_scaffold_3377

SRS020334_Baylor_scaffold_3377__gene_3334

F095633

MGNYENFTEVGRGEGLTEGELRTMGALAMKATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN

SRS020334_Baylor_scaffold_43366

SRS020334_Baylor_scaffold_43366__gene_48768

F105378

MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE

SRS020334_Baylor_scaffold_43754

SRS020334_Baylor_scaffold_43754__gene_49671

F105378

MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000592: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences