NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000596

7000000596: Human throat microbial communities from NIH, USA - visit 2, subject 763961826



Overview

Basic Information
IMG/M Taxon OID7000000596 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053168 | Ga0031223
Sample NameHuman throat microbial communities from NIH, USA - visit 2, subject 763961826
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size64044597
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
Not Available1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F043990Metagenome155N
F047127Metagenome150N
F061925Metagenome131N
F064819Metagenome128N
F078842Metagenome116N
F085820Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1924671All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales547Open in IMG/M
C1944088Not Available683Open in IMG/M
C1947656All Organisms → cellular organisms → Bacteria718Open in IMG/M
C1960044All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium893Open in IMG/M
C1981679All Organisms → cellular organisms → Bacteria2092Open in IMG/M
SRS019027_WUGC_scaffold_16811All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1008Open in IMG/M
SRS019027_WUGC_scaffold_19685All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1924671C1924671__gene_74765F047127QQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
C1944088C1944088__gene_85535F085820NPIEAFMYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSEKGK
C1947656C1947656__gene_87579F061925MSWEYSINLDSEEAVNSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C1960044C1960044__gene_95113F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKYK
C1981679C1981679__gene_111459F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC
SRS019027_WUGC_scaffold_16811SRS019027_WUGC_scaffold_16811__gene_15648F078842ISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKSLSLSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDIYEVNS
SRS019027_WUGC_scaffold_19685SRS019027_WUGC_scaffold_19685__gene_20457F043990MIKKLGIIFTFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWALNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRDFGILIV
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