NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000598

7000000598: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311



Overview

Basic Information
IMG/M Taxon OID7000000598 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053170 | Ga0031085
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71460939
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047508Metagenome149N
F067846Metagenome125Y
F085821Metagenome111N
F094006Metagenome106Y
F101358Metagenome102Y
F101359Metagenome102N
F105377Metagenome100Y
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1755544All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca596Open in IMG/M
C1764221All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae648Open in IMG/M
C1778258Not Available763Open in IMG/M
C1792845All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium980Open in IMG/M
C1794486All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21018Open in IMG/M
C1813218All Organisms → cellular organisms → Bacteria2508Open in IMG/M
C1815806All Organisms → Viruses4244Open in IMG/M
SRS024144_LANL_scaffold_17697All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae3049Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1755544C1755544__gene_101387F047508LVGEPIHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSS
C1764221C1764221__gene_105927F094006MRGTLEPAGPTGALHEPTVSVEAHIGELQAGGIACRCLFAFGGRDLLAVAELGAKAPYAIDMYDIALCEPLSELFAEELEYAFNFGA
C1778258C1778258__gene_113333F085821MDHIFEQLARLAETKKQQTAIAKFIEKGFKFTRQSDAQKFTFLVYDFFVAGNIPAMQLCIDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAETQSHIALLKDLYKKVNKIK
C1792845C1792845__gene_121641F101359SKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
C1794486C1794486__gene_122646F105380GRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGSRLVYNRLCKGRMMDDISADDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNSIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
C1813218C1813218__gene_135165F101358MDGTPKERAIHPDTHIIPKHENVPQYLWNVLRSSGQLDEGWIDEEIITEDGVTLMRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVIVKDGRLQPVADATHAASQSSATEQETEVLPAQGDDTYEHLSGDSARQLVGSVAAKASGEVDNSLLVERALERVR
C1815806C1815806__gene_137733F105377MEVRSEVRDFDDLPLLTPEEAFERAWEEGGSAHPVFDRGYRIRDLSSWKAVETLLRQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTATNVYVGGERRTVQAIRAHYSGD
SRS024144_LANL_scaffold_17697SRS024144_LANL_scaffold_17697__gene_19487F067846MSIIAEWERQEFNKWDKQCSKQDDYNRAIEMEIEAIKEDIANGDDDVMCAFSEKMFDDEEFLKAVALGTDYEEMRIKILTAMAEERLEQLEKDYRNGYILNN
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