Sample 7000000608

Overview

Basic Information
IMG/M Taxon OID	7000000608 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053180 \| Ga0031316
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	67768609
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F042387	Metagenome	158	N
F046432	Metagenome	151	Y
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F078842	Metagenome	116	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F033081

Metagenome

178

F042387

Metagenome

158

F046432

Metagenome

151

F051213

Metagenome

144

F054109

Metagenome

140

F078842

Metagenome

116

F099454

Metagenome

103

F103431

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
C2426658	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	514	Open in IMG/M
C2440074	Not Available	578	Open in IMG/M
C2477232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1034	Open in IMG/M
C2487318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1565	Open in IMG/M
C2487624	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1595	Open in IMG/M
SRS024375_LANL_scaffold_17850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	20067	Open in IMG/M
SRS024375_LANL_scaffold_19293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1075	Open in IMG/M
SRS024375_LANL_scaffold_44058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3431	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C2426658

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens

514

Open in IMG/M

C2440074

Not Available

578

Open in IMG/M

C2477232

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

1034

Open in IMG/M

C2487318

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

1565

Open in IMG/M

C2487624

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

1595

Open in IMG/M

SRS024375_LANL_scaffold_17850

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens

20067

Open in IMG/M

SRS024375_LANL_scaffold_19293

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

1075

Open in IMG/M

SRS024375_LANL_scaffold_44058

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

3431

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C2426658	C2426658__gene_97120	F099454	KASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK
C2440074	C2440074__gene_102481	F054109	MSGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDVSLSSYINKAVLEKVKRDEKSEN
C2477232	C2477232__gene_118601	F046432	MWEMTENELSEVISKYQMPEGRYSVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEIKS
C2487318	C2487318__gene_123640	F033081	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
C2487624	C2487624__gene_123796	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVIREYRYNGSEVLVNENIKYHSESYAYNLKDENFTHTYVLNGENITKIHHQISKNVSGGHFYLNPNNMVVIDEEVIYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSTNLYGSGADSSEYKFQYEYKNNFPIK
SRS024375_LANL_scaffold_17850	SRS024375_LANL_scaffold_17850__gene_20262	F103431	MINLDGLIVGMLFFIQLFLQSIAWGVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG
SRS024375_LANL_scaffold_19293	SRS024375_LANL_scaffold_19293__gene_21839	F051213	MKASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS024375_LANL_scaffold_44058	SRS024375_LANL_scaffold_44058__gene_54321	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYETNS

Scaffold ID

Protein ID

Family

Sequence

C2426658

C2426658__gene_97120

F099454

KASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK

C2440074

C2440074__gene_102481

F054109

MSGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDVSLSSYINKAVLEKVKRDEKSEN

C2477232

C2477232__gene_118601

F046432

MWEMTENELSEVISKYQMPEGRYSVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEIKS

C2487318

C2487318__gene_123640

F033081

MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL

C2487624

C2487624__gene_123796

F042387

MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVIREYRYNGSEVLVNENIKYHSESYAYNLKDENFTHTYVLNGENITKIHHQISKNVSGGHFYLNPNNMVVIDEEVIYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSTNLYGSGADSSEYKFQYEYKNNFPIK

SRS024375_LANL_scaffold_17850

SRS024375_LANL_scaffold_17850__gene_20262

F103431

MINLDGLIVGMLFFIQLFLQSIAWGVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG

SRS024375_LANL_scaffold_19293

SRS024375_LANL_scaffold_19293__gene_21839

F051213

MKASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK

SRS024375_LANL_scaffold_44058

SRS024375_LANL_scaffold_44058__gene_54321

F078842

MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYETNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000608: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences