NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000611

7000000611: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214



Overview

Basic Information
IMG/M Taxon OID7000000611 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053183 | Ga0028020
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size68874072
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F042387Metagenome158N
F043990Metagenome155N
F051213Metagenome144N
F054109Metagenome140N
F054111Metagenome140N
F057446Metagenome136N
F059076Metagenome134N
F061926Metagenome131N
F061927Metagenome131N
F068942Metagenome124N
F072446Metagenome121N
F089056Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2681565Not Available1708Open in IMG/M
C2682363All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1776Open in IMG/M
C2685733All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum2169Open in IMG/M
C2687613All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2506Open in IMG/M
C2687925All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2572Open in IMG/M
C2690755All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena3474Open in IMG/M
C2691173All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum3700Open in IMG/M
C2692299All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum4487Open in IMG/M
C2692501All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum4688Open in IMG/M
C2692585All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum4788Open in IMG/M
C2693365All Organisms → cellular organisms → Bacteria5971Open in IMG/M
C2694303All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae11550Open in IMG/M
SRS043422_LANL_scaffold_26381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii586Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2681565C2681565__gene_98831F054109MVGRPKTERGMKVHTAFKIYPDDKARAQAMADKLDMSLSSYINKAVLEKVARDEKSED
C2682363C2682363__gene_99570F072446MKKLVFLLFGLCLYCFTACDNDHEPAKPVRPFNGDTLAQIAWNFRFIVEKHYHSIPGRVPEGTTYRVPVIPRSVEDRTKKEYNDMEFDKVAHLVFRATVHGDTINRHKKELETVARQLNALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYDSGIVTLNCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMVFSSIRFAITLFNGEVLSFQHKLPSKSVLENYKQYGFEREATYFTTLWPLPEKEIER
C2685733C2685733__gene_102950F061927MKNPIFILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECTMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGE
C2687613C2687613__gene_105156F059076FILFFYCIFASLNYTLMTNRILLLGLLLGGASINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNVGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTKTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE
C2687925C2687925__gene_105553F068942MIRKILSLPTLALCFMLGSAFFAGCNEEYIKDTKVRWSNVKNPQYGDPINITLKAEGETFTTVGDYPGISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNERERTATLKLVAPPNRTQQPKQFDFSIGVSPLGTYLFKVRQPALPAKAQ
C2690755C2690755__gene_109668F054111MNKSLDNITHETFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
C2691173C2691173__gene_110395F042387MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGKELGKTNYQYSNGKLSSVIDEAVISDSGIQYKRVVTREYHYNGSEVSVNENVKYHSESYAYNLKDENSTHTYVLNGENIIKIHHDISKNVPNGHFYLNPNNMVVIDEEVIYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTIITMVYEYNK
C2692299C2692299__gene_112705F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C2692501C2692501__gene_113176F089056MFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C2692585C2692585__gene_113333F043990MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGELGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSCFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
C2693365C2693365__gene_115362F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGTKKISLEDITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2694303C2694303__gene_118823F057446MNSISFGKTSITSYPEYFEITDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTENKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQEEAEQIIKFLMNNR
SRS043422_LANL_scaffold_26381SRS043422_LANL_scaffold_26381__gene_28258F051213PTIEGDHYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSIIDVEVQKNETGKDRSVFFVTRNSYKQAYLPNMIVTQRAK
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