NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000622

7000000622: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524



Overview

Basic Information
IMG/M Taxon OID7000000622 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053196 | Ga0031357
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59983018
Sequencing Scaffolds14
Novel Protein Genes17
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3
Not Available1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F041827Metagenome159Y
F042387Metagenome158N
F043235Metagenome156N
F045567Metagenome152N
F054109Metagenome140N
F058221Metagenome135N
F061926Metagenome131N
F063777Metagenome129N
F064819Metagenome128N
F076191Metagenome118N
F089055Metagenome109Y
F094007Metagenome106N
F098763Metagenome103N
F103430Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1861949All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae7810Open in IMG/M
C1862723All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae16250Open in IMG/M
SRS077736_LANL_scaffold_13068Not Available31208Open in IMG/M
SRS077736_LANL_scaffold_15998All Organisms → cellular organisms → Bacteria22535Open in IMG/M
SRS077736_LANL_scaffold_18745All Organisms → cellular organisms → Bacteria6547Open in IMG/M
SRS077736_LANL_scaffold_22447All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae35066Open in IMG/M
SRS077736_LANL_scaffold_28843All Organisms → cellular organisms → Bacteria5820Open in IMG/M
SRS077736_LANL_scaffold_32089All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis25217Open in IMG/M
SRS077736_LANL_scaffold_34419All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales39031Open in IMG/M
SRS077736_LANL_scaffold_37276All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria10221Open in IMG/M
SRS077736_LANL_scaffold_37377All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis55015Open in IMG/M
SRS077736_LANL_scaffold_37853All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales21830Open in IMG/M
SRS077736_LANL_scaffold_38296All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales13160Open in IMG/M
SRS077736_LANL_scaffold_38309All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes26734Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1861949C1861949__gene_101183F058221MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKKVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
C1862723C1862723__gene_101837F041827MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGNNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIENITVYEKSHNDPTHDNDLYSVSPARFYTKEK
C1862723C1862723__gene_101838F041827MKRFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE
C1862723C1862723__gene_101843F042387MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
SRS077736_LANL_scaffold_13068SRS077736_LANL_scaffold_13068__gene_16049F054109MVGRPKSKKGTKVHTAFKIYPVDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN
SRS077736_LANL_scaffold_15998SRS077736_LANL_scaffold_15998__gene_19763F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS077736_LANL_scaffold_15998SRS077736_LANL_scaffold_15998__gene_19767F103430MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI
SRS077736_LANL_scaffold_18745SRS077736_LANL_scaffold_18745__gene_23854F094007MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACESCPLKLDCELYGKLGEAVLNDVLDYKKVRTATSLTKAGKKRSSWNKGCIDNDA
SRS077736_LANL_scaffold_22447SRS077736_LANL_scaffold_22447__gene_29140F063777MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE
SRS077736_LANL_scaffold_28843SRS077736_LANL_scaffold_28843__gene_38902F089055LKVEKMNSTPECVIKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGGYEKSLDYINNSPLKTVREIGDLLQSFRKGKAEESCR
SRS077736_LANL_scaffold_32089SRS077736_LANL_scaffold_32089__gene_43771F040149VADEGAEELRWEVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIDYFIYDRFVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS077736_LANL_scaffold_34419SRS077736_LANL_scaffold_34419__gene_47630F045567VHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS077736_LANL_scaffold_37276SRS077736_LANL_scaffold_37276__gene_53757F105376MNEKSEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK
SRS077736_LANL_scaffold_37377SRS077736_LANL_scaffold_37377__gene_54032F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPEGAVALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFYVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGVKGGRSMASNVLLPGSAH
SRS077736_LANL_scaffold_37853SRS077736_LANL_scaffold_37853__gene_55513F098763MDRRTSLRVLSTALYLATKLFKAVVWTTISYDSSDEVEGKGGMNAIPTAVDE
SRS077736_LANL_scaffold_38296SRS077736_LANL_scaffold_38296__gene_58507F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDVERYDLEKLTRNLKNLYECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELKKI
SRS077736_LANL_scaffold_38309SRS077736_LANL_scaffold_38309__gene_58788F061926MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
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