Sample 7000000639

Overview

Basic Information
IMG/M Taxon OID	7000000639 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053215 \| Ga0027941
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22142554
Sequencing Scaffolds	4
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F063778	Metagenome	129	Y
F101358	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F018385

Metagenome

235

F043991

Metagenome

155

F049707

Metagenome

146

F063778

Metagenome

129

F101358

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
C1200322	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	648	Open in IMG/M
C1207512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	890	Open in IMG/M
C1212989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1819	Open in IMG/M
SRS015745_WUGC_scaffold_2705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9873	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C1200322

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

648

Open in IMG/M

C1207512

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium

890

Open in IMG/M

C1212989

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces

1819

Open in IMG/M

SRS015745_WUGC_scaffold_2705

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

9873

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C1200322	C1200322__gene_38089	F049707	TTQVGNYLPRSSVVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDDTGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS
C1207512	C1207512__gene_42581	F101358	KECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSTRRLVGSVAAKASGEVDNSSLVRRALGRVR
C1212989	C1212989__gene_46755	F063778	MPETISEGAKQQLLQQLQDALGLVADADTSANDVAAITHSAADGHQLTEVMLQEMTAARGCLKLCADQIEYAISNIEAIPLDPPPED
SRS015745_WUGC_scaffold_2705	SRS015745_WUGC_scaffold_2705__gene_1723	F043991	MGKKKPSAVDGFDLNGNVVEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS015745_WUGC_scaffold_2705	SRS015745_WUGC_scaffold_2705__gene_1727	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSTEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK

Scaffold ID

Protein ID

Family

Sequence

C1200322

C1200322__gene_38089

F049707

TTQVGNYLPRSSVVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDDTGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS

C1207512

C1207512__gene_42581

F101358

KECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSTRRLVGSVAAKASGEVDNSSLVRRALGRVR

C1212989

C1212989__gene_46755

F063778

MPETISEGAKQQLLQQLQDALGLVADADTSANDVAAITHSAADGHQLTEVMLQEMTAARGCLKLCADQIEYAISNIEAIPLDPPPED

SRS015745_WUGC_scaffold_2705

SRS015745_WUGC_scaffold_2705__gene_1723

F043991

MGKKKPSAVDGFDLNGNVVEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA

SRS015745_WUGC_scaffold_2705

SRS015745_WUGC_scaffold_2705__gene_1727

F018385

MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSTEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000639: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences