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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000665 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053241 | Ga0031257 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 88868946 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 24 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 5 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | National Institutes of Health, USA | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030786 | Metagenome | 184 | N |
| F041827 | Metagenome | 159 | Y |
| F043990 | Metagenome | 155 | N |
| F046433 | Metagenome | 151 | N |
| F047508 | Metagenome | 149 | N |
| F051212 | Metagenome | 144 | N |
| F051213 | Metagenome | 144 | N |
| F053092 | Metagenome | 141 | N |
| F061926 | Metagenome | 131 | N |
| F068942 | Metagenome | 124 | N |
| F072446 | Metagenome | 121 | N |
| F073671 | Metagenome | 120 | N |
| F077404 | Metagenome | 117 | N |
| F080164 | Metagenome | 115 | N |
| F092230 | Metagenome | 107 | N |
| F097490 | Metagenome | 104 | N |
| F103430 | Metagenome | 101 | N |
| F103431 | Metagenome | 101 | N |
| F103432 | Metagenome | 101 | N |
| F105376 | Metagenome | 100 | N |
| F105380 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C1975628 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 502 | Open in IMG/M |
| C1982753 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 535 | Open in IMG/M |
| C1999346 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 638 | Open in IMG/M |
| C2038598 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1366 | Open in IMG/M |
| SRS016037_WUGC_scaffold_14581 | All Organisms → cellular organisms → Bacteria | 4786 | Open in IMG/M |
| SRS016037_WUGC_scaffold_16635 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 66326 | Open in IMG/M |
| SRS016037_WUGC_scaffold_25150 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 39407 | Open in IMG/M |
| SRS016037_WUGC_scaffold_27453 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 671 | Open in IMG/M |
| SRS016037_WUGC_scaffold_2784 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3542 | Open in IMG/M |
| SRS016037_WUGC_scaffold_28661 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057 | 29918 | Open in IMG/M |
| SRS016037_WUGC_scaffold_38427 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1165 | Open in IMG/M |
| SRS016037_WUGC_scaffold_38565 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria | 2603 | Open in IMG/M |
| SRS016037_WUGC_scaffold_40702 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 3104 | Open in IMG/M |
| SRS016037_WUGC_scaffold_40989 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 4388 | Open in IMG/M |
| SRS016037_WUGC_scaffold_42063 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 920 | Open in IMG/M |
| SRS016037_WUGC_scaffold_42647 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 2652 | Open in IMG/M |
| SRS016037_WUGC_scaffold_43757 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 11328 | Open in IMG/M |
| SRS016037_WUGC_scaffold_43873 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae | 4435 | Open in IMG/M |
| SRS016037_WUGC_scaffold_44399 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 7992 | Open in IMG/M |
| SRS016037_WUGC_scaffold_5520 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 92129 | Open in IMG/M |
| SRS016037_WUGC_scaffold_6546 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae | 73190 | Open in IMG/M |
| SRS016037_WUGC_scaffold_9815 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 36616 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C1975628 | C1975628__gene_108547 | F051212 | HSCNGTEKTMTTSPNTQKTSISEKQNAEKIERITYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSKLYNHLNLEK |
| C1982753 | C1982753__gene_110957 | F097490 | VEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYIEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
| C1999346 | C1999346__gene_116557 | F105380 | KQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKE |
| C2038598 | C2038598__gene_130209 | F043990 | MIKKLGIIFIFGVIILGIAVYANYKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKPIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRNFGILIVDTTRKEICIYYQIL |
| SRS016037_WUGC_scaffold_14581 | SRS016037_WUGC_scaffold_14581__gene_21526 | F046433 | MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHYLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGEKIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKGQYLQIY |
| SRS016037_WUGC_scaffold_16635 | SRS016037_WUGC_scaffold_16635__gene_24489 | F068942 | FDNSHTKSIMIRKILSLPTLALCFTLGSTFFAGCNEDYIKNTDIKVRWSNVKNPKYGDAINITLKAEGETFTTVGDYSWISFRSDVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKREETTTLKLVAPPNRTQQPKQFEFSVSTIPPSLYIFKVRQPALPAKAQ |
| SRS016037_WUGC_scaffold_25150 | SRS016037_WUGC_scaffold_25150__gene_37629 | F051213 | MALTFVFTSCDWVGDEPTIEGNLNKYFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK |
| SRS016037_WUGC_scaffold_27453 | SRS016037_WUGC_scaffold_27453__gene_41611 | F097490 | KTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPGVSIMAKTLYHIRGEMIEGQIHHKKIDSIVCSVCIWDDICTEQYYAMRDIVLLPKKSIKKIRYKYNEEEYRKIETVHIDFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
| SRS016037_WUGC_scaffold_2784 | SRS016037_WUGC_scaffold_2784__gene_4126 | F030786 | NVVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC |
| SRS016037_WUGC_scaffold_28661 | SRS016037_WUGC_scaffold_28661__gene_43547 | F103430 | MIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI |
| SRS016037_WUGC_scaffold_28661 | SRS016037_WUGC_scaffold_28661__gene_43550 | F105376 | MNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK |
| SRS016037_WUGC_scaffold_38427 | SRS016037_WUGC_scaffold_38427__gene_60332 | F043990 | MIKKHGIIFTFGVIILGIVVYADHKIERSWTEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL |
| SRS016037_WUGC_scaffold_38565 | SRS016037_WUGC_scaffold_38565__gene_60574 | F103431 | MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG |
| SRS016037_WUGC_scaffold_40702 | SRS016037_WUGC_scaffold_40702__gene_65110 | F077404 | MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYIPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTAYDRVELSNFVQSYGRQAALETANAWVMAGYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ |
| SRS016037_WUGC_scaffold_40989 | SRS016037_WUGC_scaffold_40989__gene_65752 | F073671 | QAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK |
| SRS016037_WUGC_scaffold_42063 | SRS016037_WUGC_scaffold_42063__gene_68413 | F061926 | MMIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPV |
| SRS016037_WUGC_scaffold_42647 | SRS016037_WUGC_scaffold_42647__gene_69876 | F041827 | MKHFLSALALGCLLLSCNRDLENNENPAPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRPFTYELNWYNNIELVQDLRFIDNVKTRDLHNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYEEQ |
| SRS016037_WUGC_scaffold_43757 | SRS016037_WUGC_scaffold_43757__gene_73569 | F092230 | MVDKLKTHLLKVILPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV |
| SRS016037_WUGC_scaffold_43873 | SRS016037_WUGC_scaffold_43873__gene_74084 | F073671 | QAEHELAELHAQERSLEKALELVREKIRELINYTNKNKAAR |
| SRS016037_WUGC_scaffold_44399 | SRS016037_WUGC_scaffold_44399__gene_76943 | F053092 | MQSDQGLILCLTHTLLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIKADKHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
| SRS016037_WUGC_scaffold_5520 | SRS016037_WUGC_scaffold_5520__gene_8364 | F047508 | MLGHRLVEGCVKYPYLRCIGEYLRHSFDTEDVGRVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAARVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
| SRS016037_WUGC_scaffold_6546 | SRS016037_WUGC_scaffold_6546__gene_9850 | F072446 | MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETVTRQLNALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEIKLRIRDYSGRLKYPSGIVTLNCEDTESLTARYVVPLGQIRKDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPNKSVLQELPNKSVLENYQQYGFLPESTYFTTLWPLPEKEDEREL |
| SRS016037_WUGC_scaffold_9815 | SRS016037_WUGC_scaffold_9815__gene_14476 | F080164 | MVGLTLCAAPQVTLRERANAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGMQKGGSRQAVDEQVTLHLPGFEKAEKPLLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS |
| SRS016037_WUGC_scaffold_9815 | SRS016037_WUGC_scaffold_9815__gene_14477 | F103432 | MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |