NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000667

7000000667: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422



Overview

Basic Information
IMG/M Taxon OID7000000667 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053243 | Ga0031074
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size81676028
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F027205Metagenome195N
F036281Metagenome170N
F051214Metagenome144N
F067847Metagenome125N
F081456Metagenome114N
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2798252All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes698Open in IMG/M
C2806471Not Available766Open in IMG/M
SRS022149_LANL_scaffold_15506All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5173Open in IMG/M
SRS022149_LANL_scaffold_16773All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium530Open in IMG/M
SRS022149_LANL_scaffold_6725All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes930Open in IMG/M
SRS022149_LANL_scaffold_7464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1466Open in IMG/M
SRS022149_LANL_scaffold_8975Not Available969Open in IMG/M
SRS022149_LANL_scaffold_9283All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales862Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2798252C2798252__gene_120849F051214MPGKIVAHNTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQ
C2806471C2806471__gene_125796F022002RLTKETTMNMMNIYSPSSRSMSRRLALTLGLLLALLLSLPSYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI
SRS022149_LANL_scaffold_15506SRS022149_LANL_scaffold_15506__gene_13259F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNAKGHQSYDWVLKNVEWAADTIRYF
SRS022149_LANL_scaffold_15506SRS022149_LANL_scaffold_15506__gene_13260F027205VASRLIVSADDILKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS022149_LANL_scaffold_16773SRS022149_LANL_scaffold_16773__gene_14890F101359GALALVLGFIVSSCSRDKDDDAVYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGTRVQNWSTNFTSYTGQGITDSYKETVK
SRS022149_LANL_scaffold_6725SRS022149_LANL_scaffold_6725__gene_4139F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIIFGAIGFATWLVWLTPISFMTKLVMTAIGFLLCAITVILYTISAE
SRS022149_LANL_scaffold_7464SRS022149_LANL_scaffold_7464__gene_4771F018385MAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVEHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSRDGLNELVFMPRMNSRLPSTLWNTKEVK
SRS022149_LANL_scaffold_8975SRS022149_LANL_scaffold_8975__gene_6094F022002RLTKETTINMVNIYSPSSHPMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDKELDRARSAEKESEN
SRS022149_LANL_scaffold_9283SRS022149_LANL_scaffold_9283__gene_6398F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELKNL
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