NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000670

7000000670: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126



Overview

Basic Information
IMG/M Taxon OID7000000670 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053246 | Ga0031047
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size147533160
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F045567Metagenome152N
F049707Metagenome146N
F051212Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F059076Metagenome134N
F092231Metagenome107Y
F094006Metagenome106Y
F097525Metagenome104N
F098763Metagenome103N
F099454Metagenome103N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4860878All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1702Open in IMG/M
C4868247All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2115Open in IMG/M
C4871869All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2458Open in IMG/M
C4873083All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2602Open in IMG/M
C4880171All Organisms → cellular organisms → Bacteria5133Open in IMG/M
C4880940All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip26262Open in IMG/M
C4881744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9503Open in IMG/M
SRS018157_Baylor_scaffold_35550All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales663Open in IMG/M
SRS018157_Baylor_scaffold_36626All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales949Open in IMG/M
SRS018157_Baylor_scaffold_45970All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus1119Open in IMG/M
SRS018157_Baylor_scaffold_73300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia971Open in IMG/M
SRS018157_Baylor_scaffold_85156All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2960Open in IMG/M
SRS018157_Baylor_scaffold_85872All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes9223Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4860878C4860878__gene_248587F094006MRGTLEPAGPTGALHEPAVCMEAHIGELQAGRIARRSLFAFGGSNVLAVAELGAKAPYAIDMYDIALCKPLSELFGEELEYAFNFGA
C4868247C4868247__gene_252784F045567MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C4871869C4871869__gene_254933F055792MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMVIIARKYQLFHTFVIISSASLRA
C4873083C4873083__gene_255707F053092MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPIAKDTLSEARLLDVFVSIVSYKLRFFRHK
C4880171C4880171__gene_261432F098763MDRRASLRILSPALHLAMKLFEAVVRTTISYDPSDEVEGKGGMNAIPTTVDE
C4880940C4880940__gene_262328F105380MSILELDSSQYVKQGRIFKKFDSSLLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
C4881744C4881744__gene_263606F049707VSEYRSPHNDGHDPYILIWEYGNDIRRAEFAERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIHFQPKINSEGN
SRS018157_Baylor_scaffold_35550SRS018157_Baylor_scaffold_35550__gene_41848F097525MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKK
SRS018157_Baylor_scaffold_36626SRS018157_Baylor_scaffold_36626__gene_43016F059076LGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE
SRS018157_Baylor_scaffold_45970SRS018157_Baylor_scaffold_45970__gene_53756F051212FMKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTSISEKQNTEKIEKITYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNTTWDYITKQIIDIKYSQLNNHLNLEK
SRS018157_Baylor_scaffold_73300SRS018157_Baylor_scaffold_73300__gene_88854F092231MIIFAPQEFIMWTNTLIQFPWPIQVDDFSPYAERLGWKPGPRPTRFSVHDDEHVTLGDDEAGSICELFLHMAINDADDVEGAAELNDHLVSCVAAGRKVWGESFLLEAGDDPTATWRFPGDMFAQVTGGFAAVLFRFFTPEGRWYFL
SRS018157_Baylor_scaffold_85156SRS018157_Baylor_scaffold_85156__gene_111400F099454MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS018157_Baylor_scaffold_85872SRS018157_Baylor_scaffold_85872__gene_113721F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH
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