NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000716

7000000716: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937



Overview

Basic Information
IMG/M Taxon OID7000000716 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053301 | Ga0031344
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size73971811
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042387Metagenome158N
F046433Metagenome151N
F072446Metagenome121N
F080164Metagenome115N
F085820Metagenome111N
F103432Metagenome101N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1664849All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1000Open in IMG/M
C1680596Not Available2912Open in IMG/M
SRS044662_LANL_scaffold_11586All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales27057Open in IMG/M
SRS044662_LANL_scaffold_3734All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales15246Open in IMG/M
SRS044662_LANL_scaffold_49165All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1478Open in IMG/M
SRS044662_LANL_scaffold_49669Not Available146948Open in IMG/M
SRS044662_LANL_scaffold_49903All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae12738Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1664849C1664849__gene_129864F046433MSELSTSPDALSELSPVAPPKLLSQAQDASRGNPMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMENCAKELIDELAFLGMSELHFAATALAKRLRHHLEVDNKPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYKGRLKVYGGRGEIGKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDGSISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIACCAIEGRILKGERID
C1680596C1680596__gene_131382F072446MHEFNAQAKNKFNSPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFNGDTLAQIAWNFPYIVEEHYHSISGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYKSRRKYDSGRIVTLECEDTESLTARYVVQLGQIRKAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIGR
SRS044662_LANL_scaffold_11586SRS044662_LANL_scaffold_11586__gene_25683F103432MKLINSLFSFSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVTMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFCVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVAEVPLY
SRS044662_LANL_scaffold_11586SRS044662_LANL_scaffold_11586__gene_25684F080164MVGLTLSAAPQVTLRERASAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
SRS044662_LANL_scaffold_3734SRS044662_LANL_scaffold_3734__gene_8154F085820MKSSFLTLFAMLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVYADDDDSRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS044662_LANL_scaffold_49165SRS044662_LANL_scaffold_49165__gene_109267F046433MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS044662_LANL_scaffold_49669SRS044662_LANL_scaffold_49669__gene_111327F105378MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKNAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPAFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR
SRS044662_LANL_scaffold_49903SRS044662_LANL_scaffold_49903__gene_112693F042387TIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
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