NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000721

7000000721: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454



Overview

Basic Information
IMG/M Taxon OID7000000721 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053315 | Ga0031012
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size109870043
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F058221Metagenome135N
F061925Metagenome131N
F063778Metagenome129Y
F064818Metagenome128N
F090516Metagenome108N
F095630Metagenome105N
F097525Metagenome104N
F097526Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3427511All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis883Open in IMG/M
C3445463All Organisms → cellular organisms → Bacteria1164Open in IMG/M
C3452587All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1364Open in IMG/M
C3457402All Organisms → cellular organisms → Bacteria1569Open in IMG/M
C3467430All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2616Open in IMG/M
SRS014476_WUGC_scaffold_33911All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.5071Open in IMG/M
SRS014476_WUGC_scaffold_46969All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1718Open in IMG/M
SRS014476_WUGC_scaffold_54611Not Available5707Open in IMG/M
SRS014476_WUGC_scaffold_57683All Organisms → cellular organisms → Bacteria13821Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3427511C3427511__gene_182254F064818YPIPNNINGNTSKLYFTNHKSIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
C3445463C3445463__gene_191642F090516MKSNLSVELFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNYDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIRQYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFS
C3452587C3452587__gene_195410F097525MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK
C3457402C3457402__gene_198177F061925MSWEYSINLDSEEAVSSVVTDLKICELSSSSTTDYIDWKNSKPIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSII
C3467430C3467430__gene_204538F063778MPETISEEAKRQLLRQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISNIEAIPLDPPPDD
SRS014476_WUGC_scaffold_33911SRS014476_WUGC_scaffold_33911__gene_32039F097526MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKACRVGDPTPAEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELPVARDDAYGFAAALRDIPLTAPQINLLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAPLGSGDAEVQEIPQ
SRS014476_WUGC_scaffold_46969SRS014476_WUGC_scaffold_46969__gene_50416F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS014476_WUGC_scaffold_54611SRS014476_WUGC_scaffold_54611__gene_64855F022002MFGLLLTLLLSLPSHAQDVRSKVPINRIISGFTLGVTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFAFDDLDVLEQIESELEDKYGMMIESEGTSKKKEKGIVDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELDRARSAEKESEI
SRS014476_WUGC_scaffold_54611SRS014476_WUGC_scaffold_54611__gene_64856F022002MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKVFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDWAYSAENENEI
SRS014476_WUGC_scaffold_54611SRS014476_WUGC_scaffold_54611__gene_64857F022002MSRRLALTLGLLLALLLSLPSHAQDRRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS014476_WUGC_scaffold_57683SRS014476_WUGC_scaffold_57683__gene_75003F095630MRYSPLYKISKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDAELHNPAAPNVYNEALRAFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDESSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVTVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFAVYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYSI
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