Sample 7000000731

Basic Information
IMG/M Taxon OID	7000000731 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053325 \| Ga0031239
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000731 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0053325 | Ga0031239

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	124671135
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	16

Dataset Contents

Total Genome Size

124671135

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

National Institutes of Health, USA

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2885894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	742	Open in IMG/M
C2893355	Not Available	793	Open in IMG/M
C2901718	Not Available	860	Open in IMG/M
C2904828	Not Available	889	Open in IMG/M
C2919020	Not Available	1054	Open in IMG/M
C2921924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1099	Open in IMG/M
C2952528	All Organisms → Viruses → Predicted Viral	2146	Open in IMG/M
SRS014271_WUGC_scaffold_15102	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1040	Open in IMG/M
SRS014271_WUGC_scaffold_17555	All Organisms → Viruses → Predicted Viral	2562	Open in IMG/M
SRS014271_WUGC_scaffold_28266	Not Available	1470	Open in IMG/M
SRS014271_WUGC_scaffold_30217	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	695	Open in IMG/M
SRS014271_WUGC_scaffold_38209	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	723	Open in IMG/M
SRS014271_WUGC_scaffold_42157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	553	Open in IMG/M
SRS014271_WUGC_scaffold_44746	Not Available	1399	Open in IMG/M
SRS014271_WUGC_scaffold_45032	Not Available	4693	Open in IMG/M
SRS014271_WUGC_scaffold_8434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11502	Open in IMG/M
SRS014271_WUGC_scaffold_8782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1099	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2885894	C2885894__gene_153776	F103436	MITTSKDGWCDRSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE
C2893355	C2893355__gene_157637	F089057	MVHPIKFGCTIYIVLEANMTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLGSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAISKDEVLVKKLMNESATTAFQYMSEEDIHNVVDDINSRSVLSRYLSRM
C2901718	C2901718__gene_161896	F072446	LLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER
C2904828	C2904828__gene_163426	F103432	MKLINSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTTAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLLGKIQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
C2919020	C2919020__gene_171050	F081455	MEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK
C2921924	C2921924__gene_172699	F099454	MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
C2952528	C2952528__gene_193163	F095629	MRELIICACLFGCFGVANAAAPVDQPKEVKVVHNDDNVALHKKIYKLEQRIERLEKLLAEKEGK
SRS014271_WUGC_scaffold_15102	SRS014271_WUGC_scaffold_15102__gene_16893	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRK
SRS014271_WUGC_scaffold_17555	SRS014271_WUGC_scaffold_17555__gene_19538	F095631	EAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS014271_WUGC_scaffold_28266	SRS014271_WUGC_scaffold_28266__gene_31867	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIEDTETKVRWSNVKPPQYGDPINITLKAEGETFTTVGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS014271_WUGC_scaffold_30217	SRS014271_WUGC_scaffold_30217__gene_34205	F080166	VNILANFENYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPGNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLIPFVLIDDHSGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMK
SRS014271_WUGC_scaffold_38209	SRS014271_WUGC_scaffold_38209__gene_45186	F099453	MLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRVYINSANLNDLGE
SRS014271_WUGC_scaffold_42157	SRS014271_WUGC_scaffold_42157__gene_52320	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNEGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTIDTFTRHDIPKVDKDTAYYKDIVIYLTRNEREQTTTLKLVAPPNRTQQ
SRS014271_WUGC_scaffold_44746	SRS014271_WUGC_scaffold_44746__gene_59457	F085820	MRSTFYLFAVLFLATTFFSCETDEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPPNPDHLKQRIVLRLADGTEIEKELSEKGTK
SRS014271_WUGC_scaffold_45032	SRS014271_WUGC_scaffold_45032__gene_60837	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNIFNLYKDIINLDDISLLAELRHTEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFNTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
SRS014271_WUGC_scaffold_8434	SRS014271_WUGC_scaffold_8434__gene_9661	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTMKYE
SRS014271_WUGC_scaffold_8782	SRS014271_WUGC_scaffold_8782__gene_10049	F046433	LSQAQDASRDNLMVYVKADNYLGTETSDPPFMESRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000731: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences