NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000738

7000000738: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2



Overview

Basic Information
IMG/M Taxon OID7000000738 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053332 | Ga0031023
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size90833887
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F036281Metagenome170N
F055792Metagenome138N
F074985Metagenome119N
F094006Metagenome106Y
F101360Metagenome102N
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SRS015470_WUGC_scaffold_17731All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis3472Open in IMG/M
SRS015470_WUGC_scaffold_25144All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae747Open in IMG/M
SRS015470_WUGC_scaffold_29988All Organisms → Viruses → Predicted Viral1938Open in IMG/M
SRS015470_WUGC_scaffold_46294All Organisms → cellular organisms → Bacteria2039Open in IMG/M
SRS015470_WUGC_scaffold_58257All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes660Open in IMG/M
SRS015470_WUGC_scaffold_70399All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2159Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SRS015470_WUGC_scaffold_17731SRS015470_WUGC_scaffold_17731__gene_19366F103434AAVGGVAYHMVTFRPRRGRYLENGPHAVEVTVAVVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKGTENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTVAK
SRS015470_WUGC_scaffold_25144SRS015470_WUGC_scaffold_25144__gene_28164F094006GTLEPAGPTGALYEPAVSMEAYIGELQTGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMHDISLCKPLSELFAEELEYAFNFGA
SRS015470_WUGC_scaffold_29988SRS015470_WUGC_scaffold_29988__gene_34214F074985MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYARRTTKLRIVTDPTTGEQKYLLD
SRS015470_WUGC_scaffold_29988SRS015470_WUGC_scaffold_29988__gene_34215F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKIYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015470_WUGC_scaffold_46294SRS015470_WUGC_scaffold_46294__gene_54378F055792MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS015470_WUGC_scaffold_58257SRS015470_WUGC_scaffold_58257__gene_69475F101360GSVRKEDALRRAVIAAHVAKVASQEKKKALKELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKIPAPWFVAATSLDGFIKQTGEIPDGVELVTPDPRISARVSPAQEEAIRELITMGDISLIEIENTE
SRS015470_WUGC_scaffold_70399SRS015470_WUGC_scaffold_70399__gene_89029F018385LRGLHPWSLNRISGTETMMADLINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQLGYCRVACPREKKILCFNWVNWTAYMFSHDGMNELVLMPDARRRTVSQLSFDNVPVKEVK
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