NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000741

7000000741: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056



Overview

Basic Information
IMG/M Taxon OID7000000741 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053335 | Ga0031247
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size68178890
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077404Metagenome117N
F092229Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3538580Not Available887Open in IMG/M
C3543420All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron971Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3538580C3538580__gene_95928F092229MLECMMNVNSVVRTKIYEDYEFAKDVAERRFGSTIEDLDMVTILQKCATRPYNSILNNIYFRYFNSKLIDDLFKLAESPKILDLAIEYNCDYYAVNTAKTTVRRYFPDIYYNKFAIDSTIITSCRSLNDPQVNAVKSAEFTYELLMASRAEEFTPEIVRNIFIKYGLKPNPSRNVYNRINNNLNLFYYIEDYLEEYREEGKFIYGTKEYKISKDLRRLPLMLILTQLTRKNNSGYILNSNLELVKG
C3543420C3543420__gene_99130F077404MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTD

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