NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F044475

Metagenome / Metatranscriptome Family F044475

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F044475
Family Type Metagenome / Metatranscriptome
Number of Sequences 154
Average Sequence Length 63 residues
Representative Sequence MRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Number of Associated Samples 137
Number of Associated Scaffolds 154

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.23 %
% of genes near scaffold ends (potentially truncated) 30.52 %
% of genes from short scaffolds (< 2000 bps) 78.57 %
Associated GOLD sequencing projects 123
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (55.195 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil
(11.039 % of family members)
Environment Ontology (ENVO) Unclassified
(28.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.649 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 26.37%    β-sheet: 0.00%    Coil/Unstructured: 73.63%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 154 Family Scaffolds
PF01476LysM 27.27
PF01546Peptidase_M20 5.84
PF00975Thioesterase 5.84
PF12697Abhydrolase_6 4.55
PF07452CHRD 3.90
PF04392ABC_sub_bind 3.90
PF09209CecR_C 3.25
PF07819PGAP1 1.30
PF07786HGSNAT_cat 0.65
PF01494FAD_binding_3 0.65
PF07750GcrA 0.65
PF00160Pro_isomerase 0.65
PF00248Aldo_ket_red 0.65
PF13641Glyco_tranf_2_3 0.65
PF05638T6SS_HCP 0.65
PF16901DAO_C 0.65
PF02518HATPase_c 0.65
PF08240ADH_N 0.65
PF13185GAF_2 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 154 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 3.90
COG05962-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase foldCoenzyme transport and metabolism [H] 1.30
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.30
COG1075Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase foldLipid transport and metabolism [I] 1.30
COG2267Lysophospholipase, alpha-beta hydrolase superfamilyLipid transport and metabolism [I] 1.30
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.65
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.65
COG0652Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin familyPosttranslational modification, protein turnover, chaperones [O] 0.65
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.65
COG3157Type VI protein secretion system component Hcp (secreted cytotoxin)Intracellular trafficking, secretion, and vesicular transport [U] 0.65
COG3503Uncharacterized membrane protein, DUF1624 familyFunction unknown [S] 0.65
COG5352Uncharacterized conserved proteinFunction unknown [S] 0.65

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.19 %
All OrganismsrootAll Organisms44.81 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090015|GPICI_9283541All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens1043Open in IMG/M
2162886007|SwRhRL2b_contig_1420652All Organisms → cellular organisms → Bacteria → Proteobacteria1298Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0880698Not Available2806Open in IMG/M
3300000156|NODE_c0456791Not Available886Open in IMG/M
3300000890|JGI11643J12802_10786938Not Available1160Open in IMG/M
3300000891|JGI10214J12806_12075673Not Available1298Open in IMG/M
3300001990|JGI24737J22298_10009209All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3291Open in IMG/M
3300003324|soilH2_10213268All Organisms → cellular organisms → Bacteria4656Open in IMG/M
3300003324|soilH2_10350391All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1894Open in IMG/M
3300003371|JGI26145J50221_1033753Not Available529Open in IMG/M
3300003659|JGI25404J52841_10092040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei634Open in IMG/M
3300003911|JGI25405J52794_10033225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_781076Open in IMG/M
3300003994|Ga0055435_10010257Not Available1765Open in IMG/M
3300004058|Ga0055498_10002554All Organisms → cellular organisms → Bacteria1835Open in IMG/M
3300004114|Ga0062593_100518180Not Available1111Open in IMG/M
3300004114|Ga0062593_102587449Not Available576Open in IMG/M
3300004156|Ga0062589_100413706Not Available1101Open in IMG/M
3300004156|Ga0062589_101855355Not Available607Open in IMG/M
3300004479|Ga0062595_100003298All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4220Open in IMG/M
3300004643|Ga0062591_100540048Not Available1013Open in IMG/M
3300004643|Ga0062591_102619632Not Available532Open in IMG/M
3300005093|Ga0062594_100040492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2267Open in IMG/M
3300005103|Ga0066813_1000866Not Available1025Open in IMG/M
3300005158|Ga0066816_1009852Not Available693Open in IMG/M
3300005164|Ga0066815_10031759Not Available798Open in IMG/M
3300005168|Ga0066809_10007443Not Available1976Open in IMG/M
3300005327|Ga0070658_10654690Not Available911Open in IMG/M
3300005331|Ga0070670_100154221All Organisms → cellular organisms → Bacteria1989Open in IMG/M
3300005332|Ga0066388_100406880All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2005Open in IMG/M
3300005332|Ga0066388_102573148Not Available926Open in IMG/M
3300005337|Ga0070682_100222997Not Available1343Open in IMG/M
3300005340|Ga0070689_100321367Not Available1292Open in IMG/M
3300005344|Ga0070661_101107998Not Available660Open in IMG/M
3300005355|Ga0070671_100335500Not Available1289Open in IMG/M
3300005367|Ga0070667_101011330All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria776Open in IMG/M
3300005438|Ga0070701_10000795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales11288Open in IMG/M
3300005440|Ga0070705_101485046Not Available567Open in IMG/M
3300005458|Ga0070681_11366173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33632Open in IMG/M
3300005529|Ga0070741_10004486All Organisms → cellular organisms → Bacteria32540Open in IMG/M
3300005535|Ga0070684_102012671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_78545Open in IMG/M
3300005544|Ga0070686_100429573Not Available1011Open in IMG/M
3300005548|Ga0070665_100147013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2360Open in IMG/M
3300005564|Ga0070664_100594787All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300005615|Ga0070702_100000071All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales28864Open in IMG/M
3300005616|Ga0068852_100924933All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_78890Open in IMG/M
3300005713|Ga0066905_100103728All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1938Open in IMG/M
3300005764|Ga0066903_101671819Not Available1211Open in IMG/M
3300005937|Ga0081455_10000036All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales136303Open in IMG/M
3300006579|Ga0074054_11764948Not Available644Open in IMG/M
3300006581|Ga0074048_13224507Not Available765Open in IMG/M
3300006755|Ga0079222_11334502Not Available657Open in IMG/M
3300006806|Ga0079220_10084510Not Available1603Open in IMG/M
3300006871|Ga0075434_101898819Not Available601Open in IMG/M
3300006954|Ga0079219_10207566All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1118Open in IMG/M
3300006954|Ga0079219_11056551Not Available682Open in IMG/M
3300009094|Ga0111539_10026368All Organisms → cellular organisms → Bacteria7106Open in IMG/M
3300009094|Ga0111539_11216099Not Available875Open in IMG/M
3300009098|Ga0105245_11025254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria870Open in IMG/M
3300010043|Ga0126380_11949723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria536Open in IMG/M
3300010046|Ga0126384_10711646Not Available891Open in IMG/M
3300010047|Ga0126382_10715647Not Available842Open in IMG/M
3300010048|Ga0126373_10023894All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5205Open in IMG/M
3300010358|Ga0126370_10012742All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4573Open in IMG/M
3300010359|Ga0126376_12309496Not Available584Open in IMG/M
3300010362|Ga0126377_10095125All Organisms → cellular organisms → Bacteria2706Open in IMG/M
3300010362|Ga0126377_11683302Not Available709Open in IMG/M
3300010373|Ga0134128_10723343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1105Open in IMG/M
3300010403|Ga0134123_10536850Not Available1110Open in IMG/M
3300012499|Ga0157350_1028660Not Available606Open in IMG/M
3300012501|Ga0157351_1063312Not Available514Open in IMG/M
3300012513|Ga0157326_1003406All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1675Open in IMG/M
3300012902|Ga0157291_10000944All Organisms → cellular organisms → Bacteria3227Open in IMG/M
3300012903|Ga0157289_10122489Not Available771Open in IMG/M
3300012904|Ga0157282_10000570All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4679Open in IMG/M
3300012906|Ga0157295_10006032All Organisms → cellular organisms → Bacteria1958Open in IMG/M
3300012909|Ga0157290_10033660All Organisms → cellular organisms → Bacteria1224Open in IMG/M
3300012914|Ga0157297_10002060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3952Open in IMG/M
3300012948|Ga0126375_10005500All Organisms → cellular organisms → Bacteria4861Open in IMG/M
3300012948|Ga0126375_11997916Not Available512Open in IMG/M
3300012958|Ga0164299_10434427Not Available854Open in IMG/M
3300012984|Ga0164309_11923487Not Available507Open in IMG/M
3300013297|Ga0157378_10960644All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria887Open in IMG/M
3300013308|Ga0157375_10061534All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3728Open in IMG/M
3300015371|Ga0132258_10101807All Organisms → cellular organisms → Bacteria6770Open in IMG/M
3300015371|Ga0132258_12130499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1409Open in IMG/M
3300015374|Ga0132255_100398190Not Available2004Open in IMG/M
3300017939|Ga0187775_10005422All Organisms → cellular organisms → Bacteria3084Open in IMG/M
3300017959|Ga0187779_10000192All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales45160Open in IMG/M
3300017966|Ga0187776_10001617All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria11371Open in IMG/M
3300019356|Ga0173481_10123614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens1030Open in IMG/M
3300019356|Ga0173481_10190341Not Available881Open in IMG/M
3300021560|Ga0126371_10022122All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5877Open in IMG/M
3300022737|Ga0247747_1001041All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens2833Open in IMG/M
3300022893|Ga0247787_1005315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_781471Open in IMG/M
3300022899|Ga0247795_1007803All Organisms → cellular organisms → Bacteria1710Open in IMG/M
3300023057|Ga0247797_1036394Not Available680Open in IMG/M
3300023077|Ga0247802_1015445Not Available1039Open in IMG/M
3300023168|Ga0247748_1030012Not Available784Open in IMG/M
3300024187|Ga0247672_1087894Not Available539Open in IMG/M
3300025315|Ga0207697_10341241All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33665Open in IMG/M
3300025912|Ga0207707_10809021Not Available780Open in IMG/M
3300025917|Ga0207660_11569261Not Available531Open in IMG/M
3300025919|Ga0207657_11099975Not Available607Open in IMG/M
3300025927|Ga0207687_10261356All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1380Open in IMG/M
3300025931|Ga0207644_10431829Not Available1080Open in IMG/M
3300025932|Ga0207690_10030985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3418Open in IMG/M
3300025932|Ga0207690_11771770Not Available516Open in IMG/M
3300025941|Ga0207711_10094640Not Available2633Open in IMG/M
3300025945|Ga0207679_10094548Not Available2321Open in IMG/M
3300025960|Ga0207651_10862563All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens805Open in IMG/M
3300025972|Ga0207668_10244862All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1453Open in IMG/M
3300025972|Ga0207668_11027753Not Available737Open in IMG/M
3300026035|Ga0207703_10303219Not Available1457Open in IMG/M
3300026067|Ga0207678_11467575Not Available602Open in IMG/M
3300026095|Ga0207676_11228106Not Available743Open in IMG/M
3300026452|Ga0256821_1002998Not Available1504Open in IMG/M
3300026873|Ga0207620_1005189All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300026903|Ga0207462_1006207Not Available532Open in IMG/M
3300026952|Ga0207434_1001686All Organisms → cellular organisms → Bacteria1531Open in IMG/M
3300027400|Ga0207560_100137All Organisms → cellular organisms → Bacteria1498Open in IMG/M
3300027401|Ga0208637_1010133All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300027402|Ga0207465_100338All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens838Open in IMG/M
3300027411|Ga0207519_104677Not Available577Open in IMG/M
3300027424|Ga0209984_1004923Not Available1588Open in IMG/M
3300027447|Ga0207622_101449Not Available642Open in IMG/M
3300027476|Ga0207514_101434Not Available740Open in IMG/M
3300027481|Ga0207459_101553Not Available836Open in IMG/M
3300027523|Ga0208890_1032924Not Available786Open in IMG/M
3300027526|Ga0209968_1109086Not Available507Open in IMG/M
3300027560|Ga0207981_1001745All Organisms → cellular organisms → Bacteria3882Open in IMG/M
3300027560|Ga0207981_1002450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3324Open in IMG/M
3300027617|Ga0210002_1009024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1522Open in IMG/M
3300027717|Ga0209998_10107604All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33695Open in IMG/M
3300027765|Ga0209073_10027272All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1741Open in IMG/M
3300027775|Ga0209177_10264412Not Available641Open in IMG/M
3300027876|Ga0209974_10444079Not Available514Open in IMG/M
3300027907|Ga0207428_11281878Not Available508Open in IMG/M
3300028809|Ga0247824_10382610Not Available809Open in IMG/M
(restricted) 3300031150|Ga0255311_1010193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens1887Open in IMG/M
(restricted) 3300031197|Ga0255310_10064864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens961Open in IMG/M
3300031547|Ga0310887_10049007Not Available1885Open in IMG/M
3300031740|Ga0307468_100757649Not Available821Open in IMG/M
3300031858|Ga0310892_10390052Not Available904Open in IMG/M
3300031892|Ga0310893_10315782Not Available665Open in IMG/M
3300031908|Ga0310900_10827521Not Available751Open in IMG/M
3300031944|Ga0310884_10065323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1683Open in IMG/M
3300032013|Ga0310906_10386558Not Available921Open in IMG/M
3300032174|Ga0307470_10623529Not Available810Open in IMG/M
3300032174|Ga0307470_10663217Not Available789Open in IMG/M
3300032179|Ga0310889_10248591Not Available842Open in IMG/M
3300032205|Ga0307472_100127567Not Available1813Open in IMG/M
3300032205|Ga0307472_100279609Not Available1328Open in IMG/M
3300034817|Ga0373948_0000690All Organisms → cellular organisms → Bacteria4391Open in IMG/M
3300034817|Ga0373948_0009354Not Available1688Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil11.04%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.19%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.19%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere5.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.90%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.90%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere3.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.25%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.60%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.60%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.60%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.95%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.95%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.95%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.30%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.30%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil1.30%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.30%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.30%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.30%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.30%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.30%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.30%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.30%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.30%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.65%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.65%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.65%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.65%
Sugar Cane Bagasse Incubating BioreactorEngineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor0.65%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090015Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
2162886007Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000156Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobicEngineeredOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003371Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PMHost-AssociatedOpen in IMG/M
3300003659Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005103Soil and rhizosphere microbial communities from Laval, Canada - mgLAAEnvironmentalOpen in IMG/M
3300005158Soil and rhizosphere microbial communities from Laval, Canada - mgHAAEnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012499Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610EnvironmentalOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012513Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510Host-AssociatedOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022737Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5EnvironmentalOpen in IMG/M
3300022893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4EnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6EnvironmentalOpen in IMG/M
3300023168Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5EnvironmentalOpen in IMG/M
3300024187Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13EnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026873Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026952Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027400Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027401Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)EnvironmentalOpen in IMG/M
3300027402Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027411Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027424Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027447Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027476Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08.2A5-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027481Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027523Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)EnvironmentalOpen in IMG/M
3300027526Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027560Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)EnvironmentalOpen in IMG/M
3300027617Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPICI_028185302088090015SoilMPLLAYFVVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVA
SwRhRL2b_0126.000032702162886007Switchgrass RhizosphereMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAV
ICChiseqgaiiDRAFT_088069813300000033SoilMRMPLLAYFVVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVAE*
NODE_045679133300000156Sugar Cane Bagasse Incubating BioreactorMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAVE*
JGI11643J12802_1078693813300000890SoilMPLLAYFVVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVAE*
JGI10214J12806_1207567323300000891SoilRMPLLAYFLVMGIILFSGLILVSSQLESKSLAVSQRIGVPPPFKAQPDANGSPAGTVNPVAE*
JGI24737J22298_1000920963300001990Corn RhizosphereMRMPLLAYFLVMGIILFTGLVXVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
soilH2_1021326823300003324Sugarcane Root And Bulk SoilMRMPILPYVLVVGALLFGVLVLVSGHLESKPLAVSQRIGVPPPFKAAPDANGSPASTVSAATE*
soilH2_1035039143300003324Sugarcane Root And Bulk SoilMRMPILGYFLIVGALLFGGLVLISSQLQSRPLPVSQKLGVPAPFKAAPDANGSPAMGLSRAVED*
JGI26145J50221_103375323300003371Arabidopsis Thaliana RhizosphereMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE*
JGI25404J52841_1009204023300003659Tabebuia Heterophylla RhizosphereMRMPILAYFLVMGTILFGGLVLVSSQLESKPLAVSQRIGVPAPFKAPPDANESATGVVDPVAE*
JGI25405J52794_1003322523300003911Tabebuia Heterophylla RhizosphereMRMPLLAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAPPDANGSPVGAINSAVEQ*
Ga0055435_1001025723300003994Natural And Restored WetlandsMRMPLLAYFLVMGILLFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0055498_1000255433300004058Natural And Restored WetlandsMPLLVYFLVMGILLFTGLALVSSRLESRSLPVSQRIGVPPPFKAPPDANGSLAGTVNSAVE*
Ga0062593_10051818023300004114SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAVE*
Ga0062593_10258744923300004114SoilMPLLAYFLVMGIILFSGLILVSSQLESKSLAVSQRIGVPPPFKAQPDANGSPAGTVNPVAE*
Ga0062589_10041370613300004156SoilMPLLAYFLVMGIVLFTGLILVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNPAVE*
Ga0062589_10185535523300004156SoilMPLLAYFLVMGILLFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0062595_10000329813300004479SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAVE*
Ga0062591_10054004823300004643SoilLEKSMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAVE*
Ga0062591_10261963223300004643SoilMRMPLLAYFLVMGIILFSGLILVSSQLESKSLAVSQRIGVPPPFKAQPDANGSPAGTVNPVAE*
Ga0062594_10004049243300005093SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE*
Ga0066813_100086623300005103SoilMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0066816_100985213300005158SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0066815_1003175923300005164SoilMRMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVTPAIE*
Ga0066809_1000744333300005168SoilMRMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE*
Ga0070658_1065469023300005327Corn RhizosphereAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE*
Ga0070670_10015422143300005331Switchgrass RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAT
Ga0066388_10040688033300005332Tropical Forest SoilMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPAANGSLADVVDPATTTR*
Ga0066388_10257314813300005332Tropical Forest SoilMRMPVLAYFLVMGMILFGGLALASGQLESKPLAVTQRIGVPAPFKAPQDANRSPVNAVDPAATAK*
Ga0070682_10022299723300005337Corn RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAVE*
Ga0070689_10032136723300005340Switchgrass RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0070661_10110799813300005344Corn RhizosphereMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSP
Ga0070671_10033550023300005355Switchgrass RhizosphereRVCLEKSMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE*
Ga0070667_10101133023300005367Switchgrass RhizosphereFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTR*
Ga0070701_10000795143300005438Corn, Switchgrass And Miscanthus RhizosphereMRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE*
Ga0070705_10148504623300005440Corn, Switchgrass And Miscanthus RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE*
Ga0070681_1136617323300005458Corn RhizosphereEKSMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAVE*
Ga0070741_10004486283300005529Surface SoilMRMPILPYVLVVGTLLFGVLVFVSGQLESKPLPVSQRVGVPPPFKAVPDANGSLAGAVSSAAE*
Ga0070684_10201267113300005535Corn RhizosphereNLASAGLFGEIDANALLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAVE*
Ga0070686_10042957323300005544Switchgrass RhizosphereVCLEKSMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE*
Ga0070665_10014701323300005548Switchgrass RhizosphereLVEGFSLEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTR*
Ga0070664_10059478733300005564Corn RhizosphereMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0070702_100000071233300005615Corn, Switchgrass And Miscanthus RhizosphereMRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNS
Ga0068852_10092493333300005616Corn RhizospherePLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0066905_10010372853300005713Tropical Forest SoilMRMPLLAYFLVMGIILFSGLILVSGQLESKSLPVSQRIGVPPPFKAPPDANGSPAGTMNSAVEQ*
Ga0066903_10167181913300005764Tropical Forest SoilMPLLAYFLVMGIILFSGLVLVSGQLESKSLPVSQRIGVPPPFKAPPDANGSPAGSMNPGVE*
Ga0081455_10000036933300005937Tabebuia Heterophylla RhizosphereMPLLAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAPPDANGSPVGAINSAVEQ*
Ga0074054_1176494823300006579SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE*
Ga0074048_1322450713300006581SoilLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE*
Ga0079222_1133450213300006755Agricultural SoilMPLLAYFLVMGIILFAGLVLVSGQLESKSLPVSQRIGVPPPFKAPPDANGSPAATTNSAVE*
Ga0079220_1008451043300006806Agricultural SoilMRMPIFAYFLVMGITLFGGLILLSTQLESKPLAVSQRIGVPPPFKAAPDANGSPAVVIEPAAE*
Ga0075434_10189881913300006871Populus RhizosphereLVEGRILEQIVMRMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATTK*
Ga0079219_1020756613300006954Agricultural SoilMPILGYFLIVGALLFGGLVLISSQLQSRPLPVSQKLGVPAPFKAAPDANGSPAMGLSRAVED*
Ga0079219_1105655113300006954Agricultural SoilAYFLVMGITLFGGLILLSTQLESKPLAVSQRIGVPPPFKAAPDANGSPAVVIEPAAE*
Ga0111539_1002636863300009094Populus RhizosphereMPLLAYFLVMGILLFTGLVLVSGQLESKSLPVSQRVGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0111539_1121609923300009094Populus RhizosphereLVEGFSLEQIVMPMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPNTNRSTVDAVDPSKK*
Ga0105245_1102525423300009098Miscanthus RhizosphereFSLEQIVMPMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTR*
Ga0126380_1194972323300010043Tropical Forest SoilAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPQDANRSPVNAVDPAATTK*
Ga0126384_1071164613300010046Tropical Forest SoilLVEGLILKQIVMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVTQRIGVPAPFKAPQDANRSPVNAVDPAATTK*
Ga0126382_1071564723300010047Tropical Forest SoilLVEGFSLEQIVMRMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPQDANRSPVNAVDPAATTK*
Ga0126373_1002389453300010048Tropical Forest SoilMRMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPAANGSLADAVDPATTTR*
Ga0126370_1001274253300010358Tropical Forest SoilMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPAANGSLADAVDPATTTG*
Ga0126376_1230949613300010359Tropical Forest SoilLVEGLILEQIVMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPAANGSLADVVDPATTTR*
Ga0126377_1009512553300010362Tropical Forest SoilMRMPLFAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAPPDANGSSASTMSSAVE*
Ga0126377_1168330213300010362Tropical Forest SoilMRMPVLGYFLVVGALLFGGLVLVSGQLQSRPLSVSQRIGVPAPFKAAPDANGSPATATTPAE*
Ga0134128_1072334333300010373Terrestrial SoilLVEGFSLEQIVMPMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATTK*
Ga0134123_1053685023300010403Terrestrial SoilLVEGFSLEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATTK*
Ga0157350_102866013300012499Unplanted SoilMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0157351_106331213300012501Unplanted SoilMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPTPFKAQPDANGSPAGTVNSAVE*
Ga0157326_100340623300012513Arabidopsis RhizosphereMPLLDYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0157291_1000094463300012902SoilMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE*
Ga0157289_1012248923300012903SoilGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0157282_1000057023300012904SoilMRMPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE*
Ga0157295_1000603213300012906SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSP
Ga0157290_1003366033300012909SoilMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDAN
Ga0157297_1000206013300012914SoilMRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVLPPFKAQPDANGSPVGTVDSVVE*
Ga0126375_1000550053300012948Tropical Forest SoilMPLLAYFLVMGIILFSGLILVSGQLESKSLPVSQRIGVPPPFKAPPDANGSPAGTMNSAVEQ*
Ga0126375_1199791613300012948Tropical Forest SoilMPLLAYFLVMGIILFSGLVLVSSQLESKSLAVSQRIGVPPPFKAAPDANGSSAGTTDSGVEQ*
Ga0164299_1043442723300012958SoilENSMRMPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0164309_1192348713300012984SoilLVEGLILEQIVMRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATTK*
Ga0157378_1096064423300013297Miscanthus RhizosphereEGFSLEQIVMRMPVLGYLFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTR*
Ga0157375_1006153453300013308Miscanthus RhizosphereMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTK*
Ga0132258_1010180783300015371Arabidopsis RhizosphereMPLVAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAPPDANGSPAGAMNSVAE*
Ga0132258_1213049923300015371Arabidopsis RhizosphereMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE*
Ga0132255_10039819043300015374Arabidopsis RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAATVNPAVE*
Ga0187775_1000542223300017939Tropical PeatlandMRMPILSYFLVMGAILFGGLVLVSSQLESKPLLVSQRIGVPPPFKAAPDANGSPAPVVDPVNE
Ga0187779_10000192343300017959Tropical PeatlandMRMPILTYFLVMGALLFGGLLFLSSHLESKPLPVSQRIGVPAPFKALPDANGSPTSDNVQ
Ga0187776_10001617163300017966Tropical PeatlandMPILSYFLVMGAILFGGLVLVSSQLESKPLLVSQRIGVPPPFKAAPDANGSPAPVVDPVN
Ga0173481_1012361423300019356SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAV
Ga0173481_1019034113300019356SoilMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0126371_1002212253300021560Tropical Forest SoilMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPAANGSLADVVDPATTTR
Ga0247747_100104133300022737SoilMRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0247787_100531533300022893SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0247795_100780313300022899SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVN
Ga0247797_103639413300023057SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGT
Ga0247802_101544523300023077SoilLVENSMRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0247748_103001213300023168SoilMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0247672_108789413300024187SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE
Ga0207697_1034124123300025315Corn, Switchgrass And Miscanthus RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAV
Ga0207707_1080902113300025912Corn RhizosphereLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0207660_1156926123300025917Corn RhizosphereMRMPLLAYFLVMGIILFSGLILVSSQLESKSLAVSQRIGVPPPSKAQPDANGSPAGTVNPVAE
Ga0207657_1109997523300025919Corn RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAV
Ga0207687_1026135613300025927Miscanthus RhizosphereVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATT
Ga0207644_1043182913300025931Switchgrass RhizosphereRVCLEKSMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVATVNPAVE
Ga0207690_1003098513300025932Corn RhizosphereGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0207690_1177177013300025932Corn RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAV
Ga0207711_1009464023300025941Switchgrass RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVAPVNPAVE
Ga0207679_1009454823300025945Corn RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAVE
Ga0207651_1086256313300025960Switchgrass RhizosphereMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANG
Ga0207668_1024486233300025972Switchgrass RhizosphereLVEGFSLEQIVMPMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDANRSPVNAVDPAATTK
Ga0207668_1102775323300025972Switchgrass RhizosphereMPLLAYFLVMGILLFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAV
Ga0207703_1030321923300026035Switchgrass RhizosphereVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0207678_1146757523300026067Corn RhizosphereMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGAVNSAV
Ga0207676_1122810623300026095Switchgrass RhizosphereLVEGFSLEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPDANRSPVNAVDPAATTR
Ga0256821_100299853300026452SedimentMPLLAYFLVIGILLFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAV
Ga0207620_100518913300026873SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGS
Ga0207462_100620713300026903SoilFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0207434_100168623300026952SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVV
Ga0207560_10013723300027400SoilMPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVV
Ga0208637_101013333300027401SoilMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTV
Ga0207465_10033833300027402SoilMRMPLLAYFLVMGIILFTGLVLVSSQLESKSLPVSQRIGVLPPFKAQPDANGSPVGTVDSVVE
Ga0207519_10467723300027411SoilMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAV
Ga0209984_100492323300027424Arabidopsis Thaliana RhizosphereMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVA
Ga0207622_10144913300027447SoilMRMPLLAYFLVMGILLFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0207514_10143423300027476SoilAYFLVMGIILFTGLVFVSGQLETKWLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0207459_10155313300027481SoilMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSP
Ga0208890_103292413300027523SoilGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE
Ga0209968_110908613300027526Arabidopsis Thaliana RhizosphereMRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPTGAVNSAVE
Ga0207981_100174513300027560SoilMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSA
Ga0207981_100245073300027560SoilMRMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE
Ga0210002_100902413300027617Arabidopsis Thaliana RhizosphereMPLLAYFLVMGIILITGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPTGAVNSAV
Ga0209998_1010760413300027717Arabidopsis Thaliana RhizosphereISSEKSMRMPLLAYFVVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVAE
Ga0209073_1002727223300027765Agricultural SoilMRMPILGYFLIVGALLFGGLVLISSQLQSRPLPVSQKLGVPAPFKAAPDANGSPAMGLSRAVED
Ga0209177_1026441213300027775Agricultural SoilLVMGITLFGGLILLSTQLESKPLAVSQRIGVPPPFKAAPDANGSPAVVIEPAAE
Ga0209974_1044407913300027876Arabidopsis Thaliana RhizosphereMRMPLLAYFVVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPVAE
Ga0207428_1128187823300027907Populus RhizosphereMPLLAYFLVMGILLFTGLVLVSGQLESKSLPVSQRVGVPPPFKAQPDANGSPAGTVNSAV
Ga0247824_1038261023300028809SoilMRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSVVE
(restricted) Ga0255311_101019323300031150Sandy SoilMRMPILAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNPAAE
(restricted) Ga0255310_1006486413300031197Sandy SoilMRMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0310887_1004900743300031547SoilYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE
Ga0307468_10075764913300031740Hardwood Forest SoilMRMPLLAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAFPDANGSPAGTMNSAVEQ
Ga0310892_1039005213300031858SoilLVEGRILEQIVMRMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPDTNK
Ga0310893_1031578213300031892SoilMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTV
Ga0310900_1082752113300031908SoilLVEGFSLEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPNTNRSTVDAVDPSKK
Ga0310884_1006532333300031944SoilLVEGLILEQIVMRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPDANSSPVDAVDSSKK
Ga0310906_1038655813300032013SoilLVEGFSLEQIVMRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKAPPDANSSPVDAVDSSKK
Ga0307470_1062352923300032174Hardwood Forest SoilMPLLAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAFPDANGSPAGTMNSAVEQ
Ga0307470_1066321713300032174Hardwood Forest SoilMPLLAYFLVMGIILFSGLVLVSSQLESKSLPVSQRIGVPPPFKAPPDANGSPAGTMNSAVEQ
Ga0310889_1024859123300032179SoilLVEGLILEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKVPPDANSSPVDAVDSSKK
Ga0307472_10012756713300032205Hardwood Forest SoilMRMPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVFE
Ga0307472_10027960923300032205Hardwood Forest SoilRLEKSMRMPLLAYFLVMGIILFSGFVLVSSQLESKSLPVSQRIGVPPPFKAPPDANGSPAGTMNSAVEQ
Ga0373948_0000690_4229_43873300034817Rhizosphere SoilMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSAVE
Ga0373948_0009354_258_4433300034817Rhizosphere SoilMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVV

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.