 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027476 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091568 | Ga0207514 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08.2A5-11 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 24965235 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001436 | Metagenome / Metatranscriptome | 695 | Y |
| F017759 | Metagenome | 239 | N |
| F020927 | Metagenome / Metatranscriptome | 221 | N |
| F020986 | Metagenome / Metatranscriptome | 221 | Y |
| F021213 | Metagenome / Metatranscriptome | 220 | Y |
| F025530 | Metagenome | 201 | Y |
| F032780 | Metagenome / Metatranscriptome | 179 | Y |
| F033457 | Metagenome / Metatranscriptome | 177 | Y |
| F034564 | Metagenome / Metatranscriptome | 174 | Y |
| F044140 | Metagenome / Metatranscriptome | 155 | Y |
| F044475 | Metagenome / Metatranscriptome | 154 | Y |
| F049092 | Metagenome | 147 | N |
| F051273 | Metagenome / Metatranscriptome | 144 | N |
| F056406 | Metagenome | 137 | N |
| F066122 | Metagenome / Metatranscriptome | 127 | Y |
| F066518 | Metagenome | 126 | N |
| F083408 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207514_100275 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1185 | Open in IMG/M |
| Ga0207514_100389 | Not Available | 1080 | Open in IMG/M |
| Ga0207514_100608 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | 961 | Open in IMG/M |
| Ga0207514_101238 | Not Available | 780 | Open in IMG/M |
| Ga0207514_101320 | Not Available | 765 | Open in IMG/M |
| Ga0207514_101410 | Not Available | 745 | Open in IMG/M |
| Ga0207514_101434 | Not Available | 740 | Open in IMG/M |
| Ga0207514_101473 | Not Available | 733 | Open in IMG/M |
| Ga0207514_101963 | Not Available | 665 | Open in IMG/M |
| Ga0207514_102436 | All Organisms → cellular organisms → Bacteria | 620 | Open in IMG/M |
| Ga0207514_102620 | Not Available | 603 | Open in IMG/M |
| Ga0207514_102661 | Not Available | 600 | Open in IMG/M |
| Ga0207514_102688 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 598 | Open in IMG/M |
| Ga0207514_103425 | Not Available | 555 | Open in IMG/M |
| Ga0207514_103603 | All Organisms → cellular organisms → Bacteria | 546 | Open in IMG/M |
| Ga0207514_103877 | Not Available | 533 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207514_100275 | Ga0207514_1002751 | F034564 | GFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR |
| Ga0207514_100389 | Ga0207514_1003891 | F021213 | MTNDKKCTCEKPLLHERSDRKGASQSWCGRCKRPLALRPA |
| Ga0207514_100608 | Ga0207514_1006083 | F020986 | AIATELDRAFAAARVKGRMGGVVLCDTIAPLYAIHKALKATHASGELTDQQYTEKGRELLEILGNAVVSLLIQQAMSKHNH |
| Ga0207514_101238 | Ga0207514_1012381 | F025530 | MSDMQISTGTMMRISEAARDNIAAGIWFAVLAGSLFLYAQSILMTTGLMLELTAAYSTFVLCGKSARSPFVHAIPYAFALAGAVFLCLAPDFHNAIEASLVFLGVTALMHGSVVYSALKNSPESEDPAYASAT |
| Ga0207514_101320 | Ga0207514_1013202 | F033457 | MRNFMSYVLASAFVVLLLAVVTPPGFGVAARPSIEGQRLAPQIVDRTRKSDQLPVPKATGRRLTPPAAPVLVGCDPVFSALSKDKQ |
| Ga0207514_101410 | Ga0207514_1014102 | F020927 | MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLAGFAAVTYVVQHVKLKRAEHQRLLRKAEAAHQRALAAQARLERIDTAK |
| Ga0207514_101434 | Ga0207514_1014342 | F044475 | AYFLVMGIILFTGLVFVSGQLETKWLPVSQRIGVPPPFKAQPDANGSPVGTVNSVVE |
| Ga0207514_101473 | Ga0207514_1014732 | F049092 | MKFIEPVFETGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAK |
| Ga0207514_101963 | Ga0207514_1019631 | F051273 | MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVRRFYTEQLTAEGFEVSDLGLMGLNPPTAALLGIDVAKLLDCAARRAEACAAPGPAA |
| Ga0207514_102436 | Ga0207514_1024361 | F066518 | MLPRDVPLALLLIGLSWMTIARAVLVFAQKLPPTCRSCGLKLERRYLGEQVCHC |
| Ga0207514_102620 | Ga0207514_1026201 | F056406 | NDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE |
| Ga0207514_102661 | Ga0207514_1026611 | F083408 | DDANRALGPVAPARPTVSSGKDKQAQVPDKGEALAASLEGRAFGSHD |
| Ga0207514_102688 | Ga0207514_1026882 | F044140 | SNSGKCTSLSWTGEGPWAHGPGRPGGRRLCYFDGTNAVIVWTHERLGQPNHRDILAIAREGGTDHVRLIGWWTYAHHLIGKAS |
| Ga0207514_102983 | Ga0207514_1029832 | F032780 | MARRSAQSVLKRAREQALREKRELKQAKKDARTAQRRGAADWPTE |
| Ga0207514_103425 | Ga0207514_1034251 | F017759 | LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDALRLARNDPAPKAPVTRPAFPAGGIAYRTCAIDNRLIERLKKSEGPKILIVQNSCDTEFFMANLRQIPSILRGNDSAPSPRKKIYPSIKRMMTSVARRICRTAKNAR |
| Ga0207514_103603 | Ga0207514_1036032 | F001436 | RTDSPTVRWGMKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGAGRVN |
| Ga0207514_103877 | Ga0207514_1038771 | F066122 | VVNGHLEDSLRREIESYLESRLSAVRQEITTLQSLLNESLTTFLDRQGDVQMEGSLVAAITEHLHAAHERGIEL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |