Metagenome / Metatranscriptome Family F055847

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055847
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	85 residues
Representative Sequence	MNRRYAYRDYAILVSAQPAGDAPGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREKASYQGLLH
Number of Associated Samples	92
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.87 %
% of genes near scaffold ends (potentially truncated)	23.91 %
% of genes from short scaffolds (< 2000 bps)	67.39 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.290 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (12.319 % of family members)
Environment Ontology (ENVO)	Unclassified (36.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.64% β-sheet: 25.00% Coil/Unstructured: 55.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
d.50.1.1: Double-stranded RNA-binding domain (dsRBD)	d1whna1	1whn	0.64374
d.204.1.0: automated matches	d4fyla1	4fyl	0.62603
e.3.1.0: automated matches	d6huha1	6huh	0.61865
d.204.1.1: Ribosome binding protein Y (YfiA homologue)	d3v2cy_	3v2c	0.61516
e.3.1.0: automated matches	d4ovda2	4ovd	0.60957

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00392	GntR	10.87
PF01904	DUF72	7.25
PF07729	FCD	6.52
PF07007	LprI	3.62
PF00497	SBP_bac_3	2.90
PF00440	TetR_N	2.17
PF13360	PQQ_2	2.17
PF11902	DUF3422	1.45
PF11340	DUF3142	1.45
PF05960	DUF885	1.45
PF13419	HAD_2	1.45
PF13356	Arm-DNA-bind_3	0.72
PF01124	MAPEG	0.72
PF00501	AMP-binding	0.72
PF13458	Peripla_BP_6	0.72
PF00232	Glyco_hydro_1	0.72
PF12833	HTH_18	0.72
PF13302	Acetyltransf_3	0.72
PF08818	DUF1801	0.72
PF02586	SRAP	0.72
PF01355	HIPIP	0.72
PF00005	ABC_tran	0.72
PF00722	Glyco_hydro_16	0.72
PF01120	Alpha_L_fucos	0.72
PF08279	HTH_11	0.72
PF09650	PHA_gran_rgn	0.72
PF01764	Lipase_3	0.72
PF01053	Cys_Met_Meta_PP	0.72
PF05638	T6SS_HCP	0.72
PF00691	OmpA	0.72
PF13533	Biotin_lipoyl_2	0.72
PF02518	HATPase_c	0.72
PF14521	Aspzincin_M35	0.72
PF02146	SIR2	0.72
PF07366	SnoaL	0.72
PF13443	HTH_26	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	7.25
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	6.52
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	6.52
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	3.62
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	1.45
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.72
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.72
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.72
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.72
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.72
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.72
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.72
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.72
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.72
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.72
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.72
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.72
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.72
COG3669	Alpha-L-fucosidase	Carbohydrate transport and metabolism [G]	0.72
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.72
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.72
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.29 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.32 %
Unclassified	root	N/A	29.71 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	40.58 %
Unclassified	root	N/A	29.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.45 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	39.86 %
Unclassified	root	N/A	29.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.72 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10.87 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	2.17 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.72 %
Microbulbiferaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10.87 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
Candidatus Methylospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira	0.72 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.72 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.72 %
Leptothrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix	0.72 %
Microbulbifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10.87 %
unclassified Rhizobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter	0.72 %
unclassified Microbulbifer	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer	0.72 %
Candidatus Methylospira mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis	0.72 %
Leptothrix cholodnii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	0.72 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.71 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10.87 %
Rhizobacter sp. Root16D2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root16D2	0.72 %
Microbulbifer sp. OS29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	0.72 %
Candidatus Methylospira mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis	0.72 %
Leptothrix cholodnii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	0.72 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459004\|F62QY1Z02H0G1Y	Not Available	520	Open in IMG/M
3300002705\|JGI25156J39149_1000470	All Organisms → cellular organisms → Bacteria	24264	Open in IMG/M
3300002705\|JGI25156J39149_1017953	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
3300003316\|rootH1_10010297	All Organisms → cellular organisms → Bacteria	21287	Open in IMG/M
3300003316\|rootH1_10071962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2353	Open in IMG/M
3300003320\|rootH2_10041395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2588	Open in IMG/M
3300003323\|rootH1_10082249	All Organisms → cellular organisms → Bacteria → Proteobacteria	8408	Open in IMG/M
3300003323\|rootH1_10095240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4518	Open in IMG/M
3300003752\|Ga0055539_1000347	All Organisms → cellular organisms → Bacteria → Proteobacteria	20554	Open in IMG/M
3300003752\|Ga0055539_1018782	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300003761\|Ga0055535_1000433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	38884	Open in IMG/M
3300005327\|Ga0070658_10023677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4924	Open in IMG/M
3300005327\|Ga0070658_10184539	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300005327\|Ga0070658_10194387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1711	Open in IMG/M
3300005327\|Ga0070658_10370055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1228	Open in IMG/M
3300005327\|Ga0070658_10573879	Not Available	977	Open in IMG/M
3300005330\|Ga0070690_100046107	Not Available	2771	Open in IMG/M
3300005334\|Ga0068869_100252882	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300005339\|Ga0070660_100322506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1269	Open in IMG/M
3300005339\|Ga0070660_100421271	All Organisms → cellular organisms → Bacteria → Proteobacteria	1106	Open in IMG/M
3300005339\|Ga0070660_100794764	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300005364\|Ga0070673_100019717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4847	Open in IMG/M
3300005365\|Ga0070688_101174306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	616	Open in IMG/M
3300005366\|Ga0070659_100050526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3268	Open in IMG/M
3300005366\|Ga0070659_101660215	Not Available	571	Open in IMG/M
3300005456\|Ga0070678_100648408	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300005513\|Ga0077120_1013308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7247	Open in IMG/M
3300005519\|Ga0077119_10004361	All Organisms → cellular organisms → Bacteria → Proteobacteria	16755	Open in IMG/M
3300005519\|Ga0077119_10007057	All Organisms → cellular organisms → Bacteria → Proteobacteria	12475	Open in IMG/M
3300005519\|Ga0077119_10026236	All Organisms → cellular organisms → Bacteria → Proteobacteria	4860	Open in IMG/M
3300005519\|Ga0077119_10037457	All Organisms → cellular organisms → Bacteria	3649	Open in IMG/M
3300005519\|Ga0077119_10066314	All Organisms → cellular organisms → Bacteria	2261	Open in IMG/M
3300005539\|Ga0068853_100243544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1649	Open in IMG/M
3300005544\|Ga0070686_101089606	Not Available	659	Open in IMG/M
3300005563\|Ga0068855_100007451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13252	Open in IMG/M
3300005563\|Ga0068855_100104072	All Organisms → cellular organisms → Bacteria	3265	Open in IMG/M
3300005563\|Ga0068855_100784512	Not Available	1014	Open in IMG/M
3300005577\|Ga0068857_100004497	All Organisms → cellular organisms → Bacteria	11784	Open in IMG/M
3300005577\|Ga0068857_100447836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1207	Open in IMG/M
3300005577\|Ga0068857_100751793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	929	Open in IMG/M
3300005616\|Ga0068852_101257395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	762	Open in IMG/M
3300005616\|Ga0068852_101772126	Not Available	640	Open in IMG/M
3300006195\|Ga0075366_10096355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1774	Open in IMG/M
3300009093\|Ga0105240_10009347	All Organisms → cellular organisms → Bacteria	13895	Open in IMG/M
3300009148\|Ga0105243_12491917	Not Available	556	Open in IMG/M
3300009176\|Ga0105242_11402111	Not Available	726	Open in IMG/M
3300009660\|Ga0105854_1354577	Not Available	524	Open in IMG/M
3300009709\|Ga0116227_10093654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2463	Open in IMG/M
3300009709\|Ga0116227_10214144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1492	Open in IMG/M
3300009709\|Ga0116227_10536589	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300009787\|Ga0116226_10631335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300010373\|Ga0134128_12051734	Not Available	630	Open in IMG/M
3300010869\|Ga0126359_1069450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1384	Open in IMG/M
3300013297\|Ga0157378_10016239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6520	Open in IMG/M
3300013297\|Ga0157378_11122908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	824	Open in IMG/M
3300014168\|Ga0181534_10873005	Not Available	536	Open in IMG/M
3300015262\|Ga0182007_10379087	Not Available	536	Open in IMG/M
3300015374\|Ga0132255_101902648	All Organisms → cellular organisms → Bacteria → Proteobacteria	904	Open in IMG/M
3300018037\|Ga0187883_10612979	Not Available	565	Open in IMG/M
3300021405\|Ga0210387_10643517	Not Available	941	Open in IMG/M
3300021432\|Ga0210384_10000416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	65297	Open in IMG/M
3300021475\|Ga0210392_10461929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	932	Open in IMG/M
3300022720\|Ga0242672_1041535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	742	Open in IMG/M
3300022720\|Ga0242672_1120705	Not Available	536	Open in IMG/M
3300022870\|Ga0247782_1026920	Not Available	755	Open in IMG/M
3300025226\|Ga0209674_100003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2196646	Open in IMG/M
3300025228\|Ga0209672_119662	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300025231\|Ga0207427_100530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	19851	Open in IMG/M
3300025246\|Ga0209646_1000150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	99112	Open in IMG/M
3300025253\|Ga0209677_110931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1463	Open in IMG/M
3300025256\|Ga0209759_1001052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	18269	Open in IMG/M
3300025256\|Ga0209759_1016995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis	1810	Open in IMG/M
3300025256\|Ga0209759_1020842	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300025272\|Ga0209455_1019431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1373	Open in IMG/M
3300025909\|Ga0207705_10459599	Not Available	987	Open in IMG/M
3300025909\|Ga0207705_10514379	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300025911\|Ga0207654_10653935	Not Available	753	Open in IMG/M
3300025913\|Ga0207695_10016490	All Organisms → cellular organisms → Bacteria	8637	Open in IMG/M
3300025919\|Ga0207657_10045486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3852	Open in IMG/M
3300025919\|Ga0207657_10644796	Not Available	825	Open in IMG/M
3300025919\|Ga0207657_10686749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	796	Open in IMG/M
3300025924\|Ga0207694_10124868	All Organisms → cellular organisms → Bacteria → Proteobacteria	2058	Open in IMG/M
3300025924\|Ga0207694_10302774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1316	Open in IMG/M
3300025927\|Ga0207687_10362753	Not Available	1183	Open in IMG/M
3300025932\|Ga0207690_10201962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1510	Open in IMG/M
3300025932\|Ga0207690_10849819	Not Available	756	Open in IMG/M
3300025949\|Ga0207667_10046311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4604	Open in IMG/M
3300025949\|Ga0207667_10291911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1666	Open in IMG/M
3300025949\|Ga0207667_10812762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	931	Open in IMG/M
3300025960\|Ga0207651_10006572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6108	Open in IMG/M
3300025960\|Ga0207651_11095813	Not Available	714	Open in IMG/M
3300026023\|Ga0207677_11027814	Not Available	748	Open in IMG/M
3300026041\|Ga0207639_12173820	Not Available	516	Open in IMG/M
3300026116\|Ga0207674_10005706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	14756	Open in IMG/M
3300026116\|Ga0207674_10746266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	945	Open in IMG/M
3300026121\|Ga0207683_10180904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1912	Open in IMG/M
3300026142\|Ga0207698_10455110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1236	Open in IMG/M
3300026142\|Ga0207698_11673956	Not Available	652	Open in IMG/M
3300027817\|Ga0209112_10056016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300028562\|Ga0302151_10000397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	26338	Open in IMG/M
3300028562\|Ga0302151_10030144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root16D2	1985	Open in IMG/M
3300028666\|Ga0265336_10000016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	238832	Open in IMG/M
3300028765\|Ga0302198_10441832	Not Available	589	Open in IMG/M
3300028783\|Ga0302279_10000480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	57996	Open in IMG/M
3300029951\|Ga0311371_10054841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6734	Open in IMG/M
3300029954\|Ga0311331_10296699	Not Available	1726	Open in IMG/M
3300030000\|Ga0311337_10440241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300030010\|Ga0302299_10244567	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300030010\|Ga0302299_10500401	Not Available	612	Open in IMG/M
3300030020\|Ga0311344_10183163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	2185	Open in IMG/M
3300030051\|Ga0302195_10230190	All Organisms → cellular organisms → Bacteria → Proteobacteria	842	Open in IMG/M
3300030225\|Ga0302196_10052333	All Organisms → cellular organisms → Bacteria → Proteobacteria	2666	Open in IMG/M
3300030294\|Ga0311349_11194615	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300030294\|Ga0311349_11704390	Not Available	583	Open in IMG/M
3300030294\|Ga0311349_11742671	Not Available	575	Open in IMG/M
3300030520\|Ga0311372_11417912	Not Available	865	Open in IMG/M
3300030520\|Ga0311372_11737061	Not Available	749	Open in IMG/M
3300030521\|Ga0307511_10039656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii	4019	Open in IMG/M
3300030580\|Ga0311355_10612365	All Organisms → cellular organisms → Bacteria → Proteobacteria	1026	Open in IMG/M
3300030687\|Ga0302309_10464874	Not Available	607	Open in IMG/M
3300031231\|Ga0170824_102414280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	762	Open in IMG/M
3300031231\|Ga0170824_103681785	Not Available	639	Open in IMG/M
3300031232\|Ga0302323_100068576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3322	Open in IMG/M
3300031446\|Ga0170820_16758801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	824	Open in IMG/M
3300031474\|Ga0170818_108274889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	840	Open in IMG/M
3300031521\|Ga0311364_11827003	Not Available	597	Open in IMG/M
3300031521\|Ga0311364_11848345	Not Available	594	Open in IMG/M
3300031640\|Ga0318555_10048326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2150	Open in IMG/M
3300031726\|Ga0302321_102954707	Not Available	555	Open in IMG/M
3300031902\|Ga0302322_100598430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1297	Open in IMG/M
3300031902\|Ga0302322_102382084	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300031918\|Ga0311367_12376317	Not Available	506	Open in IMG/M
3300031942\|Ga0310916_11398394	Not Available	573	Open in IMG/M
3300031996\|Ga0308176_10625650	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300032074\|Ga0308173_10435609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1161	Open in IMG/M
3300034170\|Ga0370487_0000113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	26746	Open in IMG/M
3300034170\|Ga0370487_0103399	Not Available	913	Open in IMG/M
3300034170\|Ga0370487_0235528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	612	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.59%
Environmental	Environmental	38.41%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.59%
Terrestrial	Environmental → Terrestrial	36.96%
Aquatic	Environmental → Aquatic	1.45%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.19%
Peat	Environmental → Terrestrial → Peat	18.84%
Soil	Environmental → Terrestrial → Soil	17.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.39%
Roots	Host-Associated → Plants → Roots	14.49%
Rhizome	Host-Associated → Plants → Rhizome	3.62%
Peat Moss	Host-Associated → Plants → Peat Moss	2.90%
Freshwater	Environmental → Aquatic → Freshwater	1.45%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.22%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.59%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	7.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.97%
Endophytes	Host-Associated → Plants → Roots → Endophytes	5.07%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	3.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.90%
Loam	Environmental → Terrestrial → Soil → Loam	2.90%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.45%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.45%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.97%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	7.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.97%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	5.07%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	3.62%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.72%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	12.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	12.32%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.42%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	7.97%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.07%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	5.07%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.62%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	3.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.90%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.90%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.17%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.72%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.72%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.72%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
3300002705	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS	Host-Associated	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003752	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2	Host-Associated	Open in IMG/M
3300003761	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005513	Combined assembly of arab plate scrape CL_Cvi (Combined Assembly)	Host-Associated	Open in IMG/M
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022870	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L019-104C-5	Environmental	Open in IMG/M
3300025226	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025228	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025231	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025246	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)	Host-Associated	Open in IMG/M
3300025253	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025256	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025272	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300034170	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_06507010	2170459004	Grass Soil	MGPNLPLSGFGAAGATKLVDFTSTALDMNRRYAYRDYAILVSARPAGSQPGWRPEICVIAPDDRWQFVPTHHSLVADDLHYCLEIGRRCAESAIQSMDVEREMASYGGRWH
JGI25156J39149_100047017	3300002705	Arabidopsis Root	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH*
JGI25156J39149_10179531	3300002705	Arabidopsis Root	MNRRYAFRDYEILVTAQPATGLAGWRPEICVIAPDDRWEFVPTHHTLVANDPQYCLEIGRRCAESAIRSMDPAREIAAYQGLWH*
rootH1_100102975	3300003316	Sugarcane Root And Bulk Soil	MNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREKAGYQGFWH*
rootH1_100719623	3300003316	Sugarcane Root And Bulk Soil	MNRRYAYRDYAILVSAQPATGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPVREKAAYPGLLH*
rootH2_100413952	3300003320	Sugarcane Root And Bulk Soil	MNRRYAYRDYAILVSAQPADDAAGWRPEICVIAPDDHWEFLPTDRTLVANDPQYCLEIGRLCAESVIQSMDPARERAAYQGLLH*
rootH1_100822494	3300003323	Sugarcane Root And Bulk Soil	MNRRYAYRDYAILVSARPASGAAGWRPEICVIAPDDRWQFVPTHHSLVAVDPQYCLEIGRRCAESVIQSMDPAREKAATPSLLH*
rootH1_100952407	3300003323	Sugarcane Root And Bulk Soil	DMNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREKAGYQGFWH*
Ga0055539_100034721	3300003752	Arabidopsis Root	MNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLELGRRCAESAIQSMDPAREKAGYRGLWH*
Ga0055539_10187822	3300003752	Arabidopsis Root	MNQRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLGYCLEIGRRCAESAIQSMDPAREKATRGVLH*
Ga0055535_100043336	3300003761	Arabidopsis Root	MNRRYAYRDYEILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHHSLVANDPGWCLEIGRLCAESAIQSMDPARERATRAGPLH*
Ga0070658_100236775	3300005327	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADATGWRPEICVIAPDDRWEFVPTHDALLTGDPQYCLEIGRLCAESAIQSMDPAREKAGYKGLLH*
Ga0070658_101845392	3300005327	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVASDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH*
Ga0070658_101943871	3300005327	Corn Rhizosphere	DMNQRYAYRDYEILVSARPAVSQPGWRPEICVIAPDDRWQFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREMASRGALLH*
Ga0070658_103700552	3300005327	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH*
Ga0070658_105738791	3300005327	Corn Rhizosphere	MNQRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHLLVADDLGYCLEIGRRCAESAIQSMDPARETATRGVLH*
Ga0070690_1000461072	3300005330	Switchgrass Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPTHHSLLANDPQYCLEIGRRCAESAIQSMDPAREMASRTGLLH*
Ga0068869_1002528822	3300005334	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDARWEFVPTHHSLLANDPQYCLEIGRRCAESAIQSMDPAREMASRTGLLH*
Ga0070660_1003225062	3300005339	Corn Rhizosphere	DMNQRYAYRDYEILVSARPAVSQPGWRPEICVIAPDDRWQFVPTHKSLVANDPQYCLEIGRRCAESAIQSMDPAREMASRGALLH*
Ga0070660_1004212711	3300005339	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADATGWRPEICVIAPDDRWEFVPTHDALLAGDPQYCLEIGRLCAESAIQSMDPAREKAGYKGLLH*
Ga0070660_1007947642	3300005339	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPAREKTAYKGLLH*
Ga0070673_1000197173	3300005364	Switchgrass Rhizosphere	MNRRYAYRDYEILVSAHPAGAAPGWRPEICVIAPDDHWQFVPTHHSLVANDPHYCLEIGRRCAESAIQSMDVQRELAEYDGLWH*
Ga0070688_1011743062	3300005365	Switchgrass Rhizosphere	MNRRYAYRDYAILVSAQPAADAEGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARE
Ga0070659_1000505265	3300005366	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADYNGPWH*
Ga0070659_1016602152	3300005366	Corn Rhizosphere	AYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPVREKAAYKGLLH*
Ga0070678_1006484082	3300005456	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADAASWRPEICVIAPDDRWEFVPTHAALVANDPKDCLEIGRLCAESAIQSMDPAREKAAYQGLLH*
Ga0077120_10133087	3300005513	Arabidopsis Rhizosphere	MNRRYAYRDYAILVSAQPAAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRMCAESAIQSMDPVREKAAYEGLLH*
Ga0077119_1000436118	3300005519	Arabidopsis Root	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADYGGPWH*
Ga0077119_100070575	3300005519	Arabidopsis Root	MNRRYAYRDYAILVSARPAAPAAGWRPEICVIAPDDRWQMVPTHHSLVVADPQRCLEIGRHCAESAIQSMDPPREKIARRGLPH*
Ga0077119_100262366	3300005519	Arabidopsis Root	MNRRYAYRDYEILVSAQPAGVQPGWRPEICIIAPDDRWEFVPTHHSLVANDPDWCLEIGRHCAESAIQSRDPARELAAYTGPRH*
Ga0077119_100374574	3300005519	Arabidopsis Root	MNRRYAYRDYAILVSAHPAAGARGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRLCAESAIQSMDPAREKAAYAGLLH*
Ga0077119_100663144	3300005519	Arabidopsis Root	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDRWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADY
Ga0068853_1002435442	3300005539	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKTAYQGLLH*
Ga0070686_1010896061	3300005544	Switchgrass Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPTHHSLLANDPQYCLEIGRRCAESAIQSMDPAREIASRTGLLH*
Ga0068855_1000074519	3300005563	Corn Rhizosphere	MNRRYAYRDYAILVSARAAAAGWRPEICVIAPDDRWEFVSTHDALLASDPKDCLEIGRLCAESAIQSMDPAREKAAYKGLLH*
Ga0068855_1001040725	3300005563	Corn Rhizosphere	RRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH*
Ga0068855_1007845122	3300005563	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGASPGWRPEICVIAPDDRWQFVPTHHSLVANDPHYCLEIGRRCAESAIQSMDVERELADYDGPWH*
Ga0068857_1000044974	3300005577	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWQFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH*
Ga0068857_1004478362	3300005577	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAAGWRPEICVIAPDDRWEFVPTHDTLVANDPQYCLEIGRLCAESAIQSMDPAREKTAYKGLLH*
Ga0068857_1007517931	3300005577	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAGDAPGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREKASYQGLLH*
Ga0068852_1012573951	3300005616	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAEGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH*
Ga0068852_1017721261	3300005616	Corn Rhizosphere	AIGNPAFRQTGQLLLSTALDMNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVASDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH*
Ga0075366_100963551	3300006195	Populus Endosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMD
Ga0105240_100093474	3300009093	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH*
Ga0105243_124919171	3300009148	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADAPGWRPEICVIAPDDRWEFVPTHIALVANDPKDCLEIGRLCAESAIQSMDPAREKAAYQGLLH*
Ga0105242_114021111	3300009176	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPTHHSLLANDPQYCLEIGRLCAESAIQSMDPAREKAAYKGLLH*
Ga0105854_13545771	3300009660	Permafrost Soil	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHASLVANDPNYCLEIGRRCAESAIQSMDPQREMAGYDGLWH*
Ga0116227_100936541	3300009709	Host-Associated	MNRRYAYRDYAILVSAHPARGQPGWRPEICVIAPDDRWEFVPTHQSLVVNDPRGCLEIGRRCAESAIQSMDPAREKASYGALLH*
Ga0116227_102141442	3300009709	Host-Associated	MNRRYAYRHYEIIVSAQPAGAQPGWRPEICVIAPDDRWQFVPTHHSLVAGDPRYCLEIGRRCAESAIQSMDGAREIAGYAGLWH*
Ga0116227_105365892	3300009709	Host-Associated	MNRRYAYRDYEILVSAHPAGDRPGWRPEICVIAPDDRWQFVATHQSLVAHDPGYCLEIGRRCAENAIQDLTPEREIAQYTGLWH*
Ga0116226_106313352	3300009787	Host-Associated	MNRRYAYRDYEILVSAQPADSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLQYCLEIGRRCAESAIQSMDVGREMASYDGPWH*
Ga0134128_120517342	3300010373	Terrestrial Soil	MDMIRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREMAGMGLLH*
Ga0126359_10694502	3300010869	Boreal Forest Soil	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDRWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVAREMAAYGGPWH*
Ga0157378_100162397	3300013297	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADSAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRRCAESAIQSMDPAREMASRTGLLH*
Ga0157378_111229081	3300013297	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPIHHSLLANDPQYCLEIGRRCAESAIQSMDPARDRASRTGLRH*
Ga0181534_108730051	3300014168	Bog	MNRRYAYRDYAILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHQSLVAHDLGRCLEIGRLCAESAIQSMDPARERAAHAGPWH*
Ga0182007_103790872	3300015262	Rhizosphere	MNRRYAFRDYAILVTARPVGGQPGWRPEICVVAPDDRWEFVPTHHSLVAADPQRCLEIGRHCAESAIRSMDPAREKAARRGFLH*
Ga0132255_1019026482	3300015374	Arabidopsis Rhizosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPVREKAAYKGLLH*
Ga0187883_106129791	3300018037	Peatland	MFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIAPDDRWQFVPTHHSLVANEPGYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0210387_106435171	3300021405	Soil	MAIHETRETWRLDPETALDMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPSYCLEIGRRCAESAIQSMDMTREMASYSGPWH
Ga0210384_1000041619	3300021432	Soil	MNRRYAYRDYEILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHHSLVANDPGWCLEIGRLCAESAIQSMDPARELAACTGLRH
Ga0210392_104619291	3300021475	Soil	PLDMNRRYAYRDYEILVSAQPAGSLPGWRPEICVIAPDDHWQLVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREIAAYEGLWH
Ga0242672_10415352	3300022720	Soil	MDMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHASLVANDLHYCLEIGRRCAESAIQSMDPRREMAAYDGPWH
Ga0242672_11207052	3300022720	Soil	VMPMNRRYAYRDFEILVTAQPAGSQPGWRPEICLIAPDDHWHFVPTPDSLVMSDLGHCIEIGRRCAESAIQDLHLEDELARYDGHWH
Ga0247782_10269202	3300022870	Plant Litter	MNRRYAYRDYEILVSAQPAGGQPGWRPEICVIAPDDHWQFVPTHHSLVANDPGYCLEIGRRCAESAIQSMDPAREVAGYDGLWH
Ga0209674_100003939	3300025226	Arabidopsis Root	MNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLELGRRCAESAIQSMDPAREKAGYRGLWH
Ga0209672_1196622	3300025228	Arabidopsis Root	MNRRYAYRDYEILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHHSLVANDPGWCLEIGRLCAESAIQSMDPARERATRAGPLH
Ga0207427_10053019	3300025231	Arabidopsis Rhizosphere	MNRRYAYRDYAILVSAQPAAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRMCAESAIQSMDPVREKAAYEGLLH
Ga0209646_100015077	3300025246	Arabidopsis Root	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH
Ga0209677_1109313	3300025253	Arabidopsis Root	MNQRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLGYCLEIGRRCAESAIQSMDPAREKATRGVLH
Ga0209759_10010523	3300025256	Arabidopsis Root	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADYGGPWH
Ga0209759_10169952	3300025256	Arabidopsis Root	MNRRYAFRDYEILVTAQPATGLAGWRPEICVIAPDDRWEFVPTHHTLVANDPQYCLEIGRRCAESAIRSMDPAREIAAYQGLWH
Ga0209759_10208422	3300025256	Arabidopsis Root	MNRRYAYRDYAILVSARPAAPAAGWRPEICVIAPDDRWQMVPTHHSLVVADPQRCLEIGRHCAESAIQSMDPPREKIARRGLPH
Ga0209455_10194312	3300025272	Arabidopsis Root	MNRRYAYRDYAILVSAHPAAGARGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRLCAESAIQSMDPAREKAAYAGLLH
Ga0207705_104595992	3300025909	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGAAPGWRPEICVIAPDDRWQFVPTHHSLVANDPHYCLEIGRRCAESAIQSMDVERELADYDGPWH
Ga0207705_105143792	3300025909	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADATGWRPEICVIAPDDRWEFVPTHDALLTGDPQYCLEIGRLCAESAIQSMDPAREKAGYKGLLH
Ga0207654_106539352	3300025911	Corn Rhizosphere	TPPPTLGVPAPDRPSDMNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH
Ga0207695_100164904	3300025913	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHHSLLADEPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH
Ga0207657_100454862	3300025919	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDLHYCLEIGRRCAESAIQSMDVERELADYNGPWH
Ga0207657_106447962	3300025919	Corn Rhizosphere	RIARRRPHWALPPQPPSDMNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPAREKAAYKGLLH
Ga0207657_106867492	3300025919	Corn Rhizosphere	YEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVASDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH
Ga0207694_101248681	3300025924	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKTAYQGLLH
Ga0207694_103027742	3300025924	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH
Ga0207687_103627532	3300025927	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPAREKTAYKGLLH
Ga0207690_102019623	3300025932	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVASDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH
Ga0207690_108498192	3300025932	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPVREKAAYKGLLH
Ga0207667_100463116	3300025949	Corn Rhizosphere	MNRRYAYRDYAILVSARAAAAGWRPEICVIAPDDRWEFVSTHDALLASDPKDCLEIGRLCAESAIQSMDPAREKAAYKGLLH
Ga0207667_102919113	3300025949	Corn Rhizosphere	MNRRYAYRDYAILVTAQPAADATGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH
Ga0207667_108127622	3300025949	Corn Rhizosphere	MNRRYAYRDYEILVSAQPAGASPGWRPEICVIAPDDRWQFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREMASRGALLH
Ga0207651_100065725	3300025960	Switchgrass Rhizosphere	MNRRYAYRDYEILVSAHPAGAAPGWRPEICVIAPDDHWQFVPTHHSLVANDPHYCLEIGRRCAESAIQSMDVQRELAEYDGLWH
Ga0207651_110958132	3300025960	Switchgrass Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPTHHSLLANDPQYCLEIGRRCAESAIQSMDP
Ga0207677_110278142	3300026023	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADTAGWRPEICLIAPDDRWEFVPTHHSLLANDPQYCLEIGRRCAESAIQSMDPAREKTAYKGLLH
Ga0207639_121738201	3300026041	Corn Rhizosphere	MNRRYAYRDYAILVSARPAADAAGWRPEICVIAPDDRWEFVPTHAALLANDPQYCLEIGRLCAESAIQSMDPAREKAAYKGLLH
Ga0207674_100057062	3300026116	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWQFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH
Ga0207674_107462662	3300026116	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAGDAPGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREKASYQGLLH
Ga0207683_101809042	3300026121	Miscanthus Rhizosphere	MNRRYAYRDYAILVSARPAADAASWRPEICVIAPDDRWEFVPTHAALVANDPKDCLEIGRLCAESAIQSMDPAREKAAYQGLLH
Ga0207698_104551102	3300026142	Corn Rhizosphere	MNRRYAYRDYAILVSAQPAADAEGWRPEICVIAPDDRWEFVPTHHSLLADDPQYCLEIGRRCAESAIQSMDPARERAAYAGLLH
Ga0207698_116739562	3300026142	Corn Rhizosphere	ALDMNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVASDLHYCLEIGRRCAESAIQSMDVERELADYDGPWH
Ga0209112_100560161	3300027817	Forest Soil	MNRRYAYRDYEILVSAQPAGSAPGWRPEICVIAPDDHWQFVPTHHSLVANDPHYCLEIGRRCAESAIQSMDVERELAGYEGLWH
Ga0302151_100003972	3300028562	Bog	MNRRYAYRDYEILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHQGLVANDPGWCLEIGRQCAESAIQSMDPAREKAAYDGLLH
Ga0302151_100301441	3300028562	Bog	MFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIAPDDRWQFVPTHHSLLANDPGYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0265336_1000001621	3300028666	Rhizosphere	MNRRYVYRDHEILVSAHPAGSRPGWRPEICVIAPDDHWQFVPTLDSLVIGDPQACLEIGRRCAESAIQSMDVEREMAGYAGPWH
Ga0302198_104418321	3300028765	Bog	MGWEFMFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIAPDDRWQFVPTHHSLLANDPGYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0302279_100004807	3300028783	Bog	MNRRYAYRDYEILVSAQPNDGQPGWRPEICVIAPDDHWQFVPTHRWLVANDPHYCLEIGRRCAESAIQCMDVAREMASYDGLWH
Ga0311371_100548417	3300029951	Palsa	MDMNRRYAYRDYEILVSAQPACGQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDPAREIAAYEGLWH
Ga0311331_102966992	3300029954	Bog	ARPAGAQPGWRPEICVIAPDDRWQFVPTHHSLVAEDPQYCLEIGRRCAESAIQSMDGAREIAGYAGLWH
Ga0311337_104402411	3300030000	Fen	MDMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDEARELASYDGLWH
Ga0302299_102445672	3300030010	Fen	MNRRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLQYCLEIGRRCAESAIQSMDPQRELAAYDGPWH
Ga0302299_105004012	3300030010	Fen	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDVGRELAAYAGFWH
Ga0311344_101831634	3300030020	Bog	FMFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIAPDDHWQFVPTHHSLVANDPSYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0302195_102301901	3300030051	Bog	CARREWRSYPPPQALYMNRRYAYRDYEILVSARPAGGQPGWRPEICVIAPDDRWEFVPTHQGLVANDPGWCLEIGRQCAESAIQSMDPAREKAAYDGLLH
Ga0302196_100523334	3300030225	Bog	MFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIAPDDHWQFVPTHHSLVANDPSYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0311349_111946152	3300030294	Fen	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMDVGRELAAYAGLWH
Ga0311349_117043901	3300030294	Fen	MNRRYAYRDYEILVSARPVGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDAQYCLEIGRRCAESAIQSMDPQRELAAYDGPWH
Ga0311349_117426711	3300030294	Fen	MDMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDPQYCLEIGRRCAESAIQSMD
Ga0311372_114179122	3300030520	Palsa	IGFHDFRETGRLLPPTALDMNRRYAYRDYEILVSAQPAGGLPGWRPEICVIAPDDRWQFVPTHHSLVANDPQYCLEIGRRCAESAIQNMDPAREIAAYEGLWH
Ga0311372_117370611	3300030520	Palsa	NDFASITLNMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDRTYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0307511_100396561	3300030521	Ectomycorrhiza	MNRRYAFRDYEILVTAQPAGGQPGWRPEICVIAPDDRWEFVPTHHTLVANDPKYCLEIGRRCAESAIQSMDPAREIA
Ga0311355_106123651	3300030580	Palsa	MNRRYAYRDYEILVSAQPAGSQAGWRPEICVIASDDRWQFVPTHHSLVANDPGYCLEIGRRCAESAIQS
Ga0302309_104648741	3300030687	Palsa	TGSEFMFSVRLVDFTSTAKNMNRRYAYRDYEILVSAQPAGSQAGWRPEICVIASDDRWQFVPTHHSLVANDPGYCLEIGRRCAESAIQSMDARREMASYAGHWH
Ga0170824_1024142802	3300031231	Forest Soil	TDLDMNRRYAYRDYEILVSAQPAVSQPGWRPEICVIAPDDRWQFVPTHASLVANDLHYCLEIGRRCAESAIQSMDPQREIAGYDGPWH
Ga0170824_1036817851	3300031231	Forest Soil	PDMNRRYAYRDYAILVSARPAGSQLGWRPEICVIAPDDRWQFVPTHHSLVADDLHYCLEIGRRCAESAIQSMDAKREMASYDGHWH
Ga0302323_1000685764	3300031232	Fen	MNRRYAYRDYEILVSARPVGSQPGWRPEICVIAPDDHWQFVPTHHSLVANDAQYCLEIGRRCAESAIQSMDADRELADYVGLWH
Ga0170820_167588012	3300031446	Forest Soil	DMNRRYAYRDYEILVSAQPAVSQPGWRPEICVIAPDDRWQFVPTHASLVANDLHYCLEIGRRCAESAIQSMDPQREIAGYDGPWH
Ga0170818_1082748892	3300031474	Forest Soil	MDMNRRYAYRDYEILVSAQPAVSQPGWRPEICVIAPDDRWQFVPTHASLVANDLHYCLEIGRRCAESAIQSMDPQREIAGYDGPWH
Ga0311364_118270031	3300031521	Fen	MNRRYAYRDYEILVSVQPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVATDPQYCLEIGRRCAESAIQSMDVGRELAAYAGFWH
Ga0311364_118483451	3300031521	Fen	MNRRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLQYCLEIGRRCAESAIQSMDVDREMATCAGPWH
Ga0318555_100483263	3300031640	Soil	MNRRYAYRDYAILVSARPTADAAGWRPEICVIAPDDRWEMVPTHHALVAGDPQRCLEIGRHCAESAIQSMDPAREKAARRGPLH
Ga0302321_1029547071	3300031726	Fen	ADQPPTSLDMNRRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWQFVPTHHSLVADDLQYCLEIGRRCAESAIQSMDPQREMAGYDGLWH
Ga0302322_1005984303	3300031902	Fen	MNRRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDHWEFVPTHHALVANDPGYCLEIGRRCAESAIQSMDVEREMAGYAGHWH
Ga0302322_1023820841	3300031902	Fen	MDMNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHDCLVANDAQYCLEIGRRCAESAIQSMD
Ga0311367_123763172	3300031918	Fen	YEILVSAQPAGSLPGWRPEICVIAPDDHWQFVPTHHSLVAYDPSYCLEIGRRCAESAIQSMDVAREMASYGGLWH
Ga0310916_113983942	3300031942	Soil	AILVSARPTADAAGWRPEICVIAPDDRWEMVPTHHALVAGDPQRCLEIGRHCAESAIQSMDPAREKAARRGPLH
Ga0308176_106256501	3300031996	Soil	MNRRYAYRDYAILVSAQQAADAAGWRPEICVIAPDDRWEFVPTHSALVANDPQYCLEIGRLCAESAIQSMDPAREKAAYKGLLH
Ga0308173_104356092	3300032074	Soil	MNRRYAYRDYAILVSALPSGDAAGWRPEICVIAPDDRWEFVPTHQSLRAHDPRHCLEIGRRCAESVIQSRDPASHAAACAGLLH
Ga0370487_0000113_19384_19638	3300034170	Untreated Peat Soil	MNRRYAYRDYEILVSARPAGSQPGWRPEICVIAPDDRWQFVPTHHSLVADDRHYCLEIGRRCAESAIQSMDGARELAQYDGPWH
Ga0370487_0103399_655_909	3300034170	Untreated Peat Soil	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHASLVANDPNYCLEIGRRCAESAIQSMDPQRELAAYDGLWH
Ga0370487_0235528_332_586	3300034170	Untreated Peat Soil	MNRRYAYRDYEILVSAQPAGSQPGWRPEICVIAPDDHWQFVPTHPTLVANDLHYCLEIGRRCAESAIQSMDGARELAQYDGSWH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055847

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences