Sample 3300025246

Basic Information
IMG/M Taxon OID	3300025246 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053073 \| Gp0061141 \| Ga0209646
Sample Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025246 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053073 | Gp0061141 | Ga0209646

Sample Name

Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	141835660
Sequencing Scaffolds	18
Novel Protein Genes	34
Associated Families	33

Dataset Contents

Total Genome Size

141835660

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17
Not Available	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

Not Available

Ecosystem Assignment (GOLD)
Name	Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Ecosystem Assignment (GOLD)

Name

Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

University of North Carolina, USA

Coordinates

Lat. (^o)

35.9082

Long. (^o)

-79.0499

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F023378	Metagenome / Metatranscriptome	210	Y
F023612	Metagenome / Metatranscriptome	209	Y
F024826	Metagenome / Metatranscriptome	204	Y
F026918	Metagenome / Metatranscriptome	196	N
F031516	Metagenome / Metatranscriptome	182	Y
F034241	Metagenome / Metatranscriptome	175	Y
F035339	Metagenome / Metatranscriptome	172	Y
F036775	Metagenome / Metatranscriptome	169	Y
F036776	Metagenome / Metatranscriptome	169	Y
F039453	Metagenome / Metatranscriptome	163	Y
F040130	Metagenome / Metatranscriptome	162	Y
F040712	Metagenome	161	Y
F044583	Metagenome / Metatranscriptome	154	Y
F047761	Metagenome / Metatranscriptome	149	Y
F049682	Metagenome / Metatranscriptome	146	Y
F049748	Metagenome / Metatranscriptome	146	Y
F049749	Metagenome	146	Y
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F052031	Metagenome / Metatranscriptome	143	Y
F053329	Metagenome / Metatranscriptome	141	Y
F055847	Metagenome / Metatranscriptome	138	Y
F058198	Metagenome / Metatranscriptome	135	Y
F060114	Metagenome / Metatranscriptome	133	Y
F062899	Metagenome / Metatranscriptome	130	Y
F076251	Metagenome / Metatranscriptome	118	Y
F077376	Metagenome / Metatranscriptome	117	Y
F078153	Metagenome / Metatranscriptome	116	Y
F080227	Metagenome / Metatranscriptome	115	Y
F092337	Metagenome / Metatranscriptome	107	Y
F095729	Metagenome	105	Y
F101290	Metagenome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209646_1000012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	573300	Open in IMG/M
Ga0209646_1000053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	284737	Open in IMG/M
Ga0209646_1000056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	269860	Open in IMG/M
Ga0209646_1000060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	256386	Open in IMG/M
Ga0209646_1000066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	244823	Open in IMG/M
Ga0209646_1000069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	230340	Open in IMG/M
Ga0209646_1000076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	212891	Open in IMG/M
Ga0209646_1000089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	189974	Open in IMG/M
Ga0209646_1000112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	153075	Open in IMG/M
Ga0209646_1000138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	114892	Open in IMG/M
Ga0209646_1000150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	99112	Open in IMG/M
Ga0209646_1000157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	94054	Open in IMG/M
Ga0209646_1000160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	91529	Open in IMG/M
Ga0209646_1000244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	55661	Open in IMG/M
Ga0209646_1000271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	47713	Open in IMG/M
Ga0209646_1000341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	34654	Open in IMG/M
Ga0209646_1000352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	33418	Open in IMG/M
Ga0209646_1028929	Not Available	754	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209646_1000012	Ga0209646_1000012103	F031516	MLHFDTAQMSAITQAHFFSRVAEFIRDQTTVAAYRQAAQDTSLRTALWAPHWPTLRDASEHDAALFMCFVLACATLGVDATRAAEAVRQTSQPETSMKLFLSERGLLRFSAFDVPDLTRPGAPA
Ga0209646_1000012	Ga0209646_1000012146	F023377	MTHRPVCPPRAIRMAMAALLLLAAAGVQAMTVSYQCTGRRLLTAELSPRKGQLHFEGHDWTVLRVPDKNMARYVSKKDDIEVITKERAMTFTHGGETLQCLLFSDALPGDAPRTLPKN
Ga0209646_1000012	Ga0209646_1000012255	F095729	MTSTHSKETTVKTTLRQFALVSTLLATAAFPLLSHAQDVRREDRVLHFLDSGHIDANKDGMVSKKEFMDAMSKTWDMHMDDAKKADPMMHKDKMTLQQYLEFSKMFGLNVGS
Ga0209646_1000012	Ga0209646_100001234	F076251	MTTPPRSPFWRVLQLIAGIALFLYALRLLSPMPGDRAGFILLVAILAAGSMALTDSIIGLVVAGLDKMHKKGNE
Ga0209646_1000012	Ga0209646_1000012400	F051255	MHAATAIAPVTQQAANEWAHRQAARTMVRAAMNSDAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPINDCDGLQEFALLRAHR
Ga0209646_1000012	Ga0209646_1000012443	F050419	MTNASRPTFLRNFGRGAASSSRRPPDLADMGTAFALDEALESGSIDSIVPGDPSPPPVRATVRVAPWRLWLGRKLGA
Ga0209646_1000012	Ga0209646_100001264	F044583	MDQLLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQVDAADEEEAERTVVIRRPEAGATPR
Ga0209646_1000053	Ga0209646_1000053103	F040130	MPGSVKRAVAIVAGVVLGMVIAAGASPWRELFRKTEPVQPAPIQREPAPDTRV
Ga0209646_1000053	Ga0209646_1000053180	F062899	MNPLAANRTAARPLPLPRPRAKHCSFVEDLNWPAHMPTPDRKPARPTEVWVPGPNGQWEGVTPTLQ
Ga0209646_1000053	Ga0209646_100005333	F053329	MPLVPQEIGSTPERENPSAHDPALVRDHAAGPDRETLSPSERALAPEGDAPLQSHNAVAADGTYVGQAGGYMGGASPAVESGRAQVNEANRRGDGAYGFPVGPGVGVPGGEHQPAAQKPDDLPCQYPQR
Ga0209646_1000056	Ga0209646_1000056228	F049682	MEQREFEAVVDEFGADVQDLVELVETARYEQATAVEISRLLDAREDLLVLVNKLPALRAAEAPASMNVPLASLRERIAHAREALRSSHDSKEILQMVAETGETFASIVAPLQAAGRWPKGRSR
Ga0209646_1000060	Ga0209646_1000060236	F036776	MNAIVRLLAVYTGLSLLLCAFTRLEWSPLQPNGFGQWFALFLLIFPAAAAAEFLGERLLGKPSTIEAAESRTHSDCSWGRIVTGVGVLLVTFGVVLGVAWWLAHPAASI
Ga0209646_1000066	Ga0209646_100006635	F049748	MDIKQDPNAIPNFNSGGRVGELQRNEPEQTQSSVELDPTAGGDGATSEAAEHESLLGDGSGKSARADGSAKGGQDPSRTGPGAVDGLVGAP
Ga0209646_1000066	Ga0209646_100006668	F080227	MQTRHLLTSATLALAFCAPGAFAAGDGCRTNANGVQTCDVATGNERTREAVAAEIHARADTSTGCRTNANGVQICDVPTGRERSREAVVAELRGPGSYTIEGCRTVANGVQKCDVPSPYALRRDTAVAAVH
Ga0209646_1000069	Ga0209646_1000069170	F052031	MTIDLPATHPAATEHHEEIVQFVFRSAASPGLLAHARALLGAAPKELAESFEQAVRSAGLAS
Ga0209646_1000069	Ga0209646_100006970	F024826	MADATPYFGIAPFVLGMTRELARAAAGKPDSVETTSDDEGAAVETWFYDGGEIELEFDPAPEAKLESITAWSDKTTVNGVAIIGCELGDLQRLAKQADIHDLELTDDFADSGQCWQSEQHGLMFWAAKGKVVNMTIFPRFDDSGEEPQWPE
Ga0209646_1000069	Ga0209646_100006979	F040712	MAGRPAAGENGALLIRLPASMSLRCFIVRRCLHASLEAVGLRAVNLPLVVDARRHVHPPVPLDAGYLVVDRRAFARITFPRADGREAATMQTVGFASLSGVLRAICAERIGLAGRAAIPGPRRALELRREGRWSEVLEASERVEAPMRARLDAWLRSWRFATWRFALQAFKRL
Ga0209646_1000076	Ga0209646_1000076128	F035339	LASAPLTLRQLRADRVVLWCWLPLGGFAMFAVVTGWRHVAGEPPPWLYTTLDVLWIAITFALIARRSTARCPRCNHRWLRAFPWMSLAKVECGVCGHEMPEG
Ga0209646_1000076	Ga0209646_1000076147	F060114	MTSPLSDLFEQQRIENARLSGQIVALEMAVKLLFMQHPNPNALAGFYSKAIDGLLDITLATRMPEEMRDALDQARNGLLEALRQQPTLGGGG
Ga0209646_1000089	Ga0209646_1000089102	F023378	MKFDAALWPVPANVEIHFYFQCMREPQLYKTRTILDKLMLEVGMFPDRVAMPGDMIPSHFVWAHPGEQPASGVFRRQSGQLAMDLAETDASRPVALSHIVKTLSADRARSNTAIHWIVRESEDLAELSGLDCQYPPRLRSGGTDDGDESREMPLSGQMPLRASQRMPLSPMGMGPTEAWPGVRRR
Ga0209646_1000089	Ga0209646_100008923	F039453	MPATLTSLRADAIRLTHDDVAYEPIVDDASLGALLFALDLLERDAFDLAAMRYADRVTLGPALEAARQYGLVLKRHVDRPNRAAPLLPPGVKIDHAHAWVHAAAVTVPEAERDRFCWRLARRLGDDPWCDGRPAIALANQQFGMFEEGFAEMEARALAEAAVVVEAPESEVSSVPEASSELHGAADPER
Ga0209646_1000089	Ga0209646_100008938	F034241	MSQAKPRQYIGALRAAVSAAKAVNKARAAAYHVLPDGISCKTDWAGWSDPWYDPTPRQQALLDVLQDLLDGGETEVPMIALKTALRLEIRESEIVRSRDNVGTDGESGYFFDDVLHGLYVLDAQETEQVFYSLIDRLMQPRSVRAGPGSR
Ga0209646_1000112	Ga0209646_100011219	F077376	MTTYVLSLTGDEEKAANATHWAKFRRAKLISVSRRADERMPDAGRDSIVIAEHGAGDRRATSCNPSTHDPAALAALLVRTLDIQDGTGVVLADFDNEEFAADVVARIADLGRRVTCTGQLRDFSFGARVRPLFARAA
Ga0209646_1000112	Ga0209646_10001124	F092337	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0209646_1000138	Ga0209646_10001389	F036775	MYDQLDQMPAIDEIEDRPGQRRPRGMPDPLFYACCCALALLPASLVAVLLHNLIGDPFVFLAAVVVSVWVITTVALVKIAGPLLRCRAIVAAGGLVSVAMCSLFLID
Ga0209646_1000150	Ga0209646_100015077	F055847	MNRRYAYRDYAILVSAQPAADAKGWRPEICVIAPDDRWEFVPTHQSLVANDPQYCLEIGRRCAESAIQSMDPAREKAAYQGLLH
Ga0209646_1000157	Ga0209646_100015773	F023612	MEPSLSTARRARVGRQAAALAILAATTLGARAEGLVLRTYENPAATHASAEYALTNSHVSTGSIRLLGDYYFVEPGQTGPGSATSSLVGGFRASTGVVSLSQPLSLYDTRPDPLQSLPYIGLGYSHLWLKSQLSLNADFGLASQVHGHGLLTSASSLDDVASQLRWAPVMAVNVRYSF
Ga0209646_1000157	Ga0209646_100015784	F049749	MFLFGRNRASVRLVRAWCSPFGEDGPAGELLALVDEVLASTSLQPLEGQINFGYTQPMSSLRRALAKMKPVALDALTIQDEAGDVLCSFGAESASVGDRVRAFEIFALLPPASEAMQDKLLRLLMRHGMHYGYARALGAALDPVTEMRRKRGFFDQTIEVAGGRADWLVPEMDVRAGAVRGLYPLNVFSAVGLARLAGSGLRLPPSAPTLGDQLWRPTIIEQSELLRVNPTYRGFLHFGD
Ga0209646_1000160	Ga0209646_100016070	F101290	MTLRTHFLALAVSATLGGAVLAAEPPAASSDSPEADASLYGQSVTLPRQAVACSERIADYMPRFQKAFDAWRRENAARIESGGRFIHEQAAKGGVNADEGMAKLAGADVERLRKTSLELLTRHCDLMLESLAAPAATN
Ga0209646_1000244	Ga0209646_100024421	F078153	MGWMLFEAMLALGVMLAVVWWTFRGRAENDDDADADEPDRPQ
Ga0209646_1000271	Ga0209646_100027147	F047761	MDVLTRLAALIIAILLAIDAFSGERCETVRVERHSHSARWHRDDDYRLHLAAGRVESCAVGWPAWSALRDGDEVVVDTSRVFKTCDGIRRADEAAPRSNLRGWLMLLPIALLLAAAFGWIQFERDLRAERRWWFG
Ga0209646_1000341	Ga0209646_100034124	F026918	MDSKQLFIEHLAGELQAMEVGRVPMNALRYRVHAKMLRKALAEATTPSLLERQGGAHPQVVHALSNRFFEETGHLLQPNATAHKARSVLERTMAACRQARQK
Ga0209646_1000352	Ga0209646_100035228	F058198	MNELLLVSLVLVALALRTVVVRHRISGWECLWRFRSGPCTVELRRHAGMARLGGDSCEYPQPREFRVMSLRVGGIPLWSQRAIVSLPTDADSRVGEIPASEFDHLFERHFRMSWPRQAKAMRRLAARAH
Ga0209646_1028929	Ga0209646_10289291	F051255	MNAAAAYIAHANRAANDFARSQAARTMVRAAMHSNAVVYCRTWPTLEAIETLGEAEYDPSLRFNGFLDSTLDLRDGLSVVEVFAPID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025246: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences