Metagenome / Metatranscriptome Family F055931

Basic Information
Family ID	F055931
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	48 residues
Representative Sequence	QRKLGVVILVNRGKQHATGIGRQILHALAQDQSEPSNEGEPEPDGD
Number of Associated Samples	117
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.45 %
% of genes near scaffold ends (potentially truncated)	96.38 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (31.884 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.62% β-sheet: 0.00% Coil/Unstructured: 78.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13602	ADH_zinc_N_2	24.64
PF12697	Abhydrolase_6	13.77
PF00583	Acetyltransf_1	7.97
PF00561	Abhydrolase_1	2.17
PF01230	HIT	2.17
PF14329	DUF4386	1.45
PF07585	BBP7	1.45
PF08818	DUF1801	1.45
PF08291	Peptidase_M15_3	0.72
PF01521	Fe-S_biosyn	0.72
PF01321	Creatinase_N	0.72
PF01544	CorA	0.72
PF11954	DUF3471	0.72
PF13875	DUF4202	0.72
PF03641	Lysine_decarbox	0.72
PF00144	Beta-lactamase	0.72
PF00067	p450	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.45
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.45
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.45
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	0.72
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.72
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.72
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.72
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG2124	Cytochrome P450	Defense mechanisms [V]	0.72
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.72
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	36.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	36.23 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	20.29 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	15.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.72 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
Methyloglobulus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus	0.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	19.57 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
unclassified Methyloglobulus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus	0.72 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	15.22 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.22 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
Methyloglobulus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus → Methyloglobulus sp.	0.72 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	15.22 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.22 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.45 %
Methyloglobulus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus → Methyloglobulus sp.	0.72 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02GA484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	517	Open in IMG/M
2170459021\|G14TP7Y01EXQ30	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
2209111022\|2221198655	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	526	Open in IMG/M
2228664021\|ICCgaii200_c0905341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	691	Open in IMG/M
3300000550\|F24TB_10078554	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300000787\|JGI11643J11755_11598173	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300000955\|JGI1027J12803_105053584	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300000955\|JGI1027J12803_106996773	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	983	Open in IMG/M
3300002128\|JGI24036J26619_10073481	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300003911\|JGI25405J52794_10069142	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300004156\|Ga0062589_101469661	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300004479\|Ga0062595_100933734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300005166\|Ga0066674_10452535	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005180\|Ga0066685_10307271	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300005184\|Ga0066671_10687234	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005187\|Ga0066675_11034911	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005294\|Ga0065705_10158423	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300005332\|Ga0066388_106493100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	590	Open in IMG/M
3300005347\|Ga0070668_101090935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005367\|Ga0070667_100050132	All Organisms → cellular organisms → Bacteria → Proteobacteria	3518	Open in IMG/M
3300005435\|Ga0070714_100293601	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300005436\|Ga0070713_100269934	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300005440\|Ga0070705_100019166	All Organisms → cellular organisms → Bacteria → Proteobacteria	3598	Open in IMG/M
3300005544\|Ga0070686_100611225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	860	Open in IMG/M
3300005556\|Ga0066707_10689501	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005558\|Ga0066698_11070537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300005587\|Ga0066654_10200590	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300005587\|Ga0066654_10497386	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005764\|Ga0066903_107642754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300006031\|Ga0066651_10242038	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300006031\|Ga0066651_10503860	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006038\|Ga0075365_10801377	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300006175\|Ga0070712_100434414	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300006575\|Ga0074053_10064210	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300006796\|Ga0066665_11402408	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300006844\|Ga0075428_101339069	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300006854\|Ga0075425_101505173	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300006854\|Ga0075425_102725511	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300009012\|Ga0066710_101909409	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	888	Open in IMG/M
3300009012\|Ga0066710_103819153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300009098\|Ga0105245_11703791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus → Methyloglobulus sp.	683	Open in IMG/M
3300009100\|Ga0075418_11484859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300009137\|Ga0066709_100251205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2368	Open in IMG/M
3300009137\|Ga0066709_100368420	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300009137\|Ga0066709_101424714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1006	Open in IMG/M
3300009137\|Ga0066709_103515059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300009156\|Ga0111538_12426472	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300009177\|Ga0105248_13316772	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	512	Open in IMG/M
3300010301\|Ga0134070_10303505	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300010303\|Ga0134082_10225339	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300010321\|Ga0134067_10071372	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300010325\|Ga0134064_10148371	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300010329\|Ga0134111_10026643	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300010333\|Ga0134080_10202907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	860	Open in IMG/M
3300010333\|Ga0134080_10220669	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300010333\|Ga0134080_10571551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	546	Open in IMG/M
3300010366\|Ga0126379_10109233	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300010371\|Ga0134125_12068768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300010376\|Ga0126381_101525807	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300010399\|Ga0134127_10130953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2249	Open in IMG/M
3300012198\|Ga0137364_10105100	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300012198\|Ga0137364_10196305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1477	Open in IMG/M
3300012198\|Ga0137364_10407863	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300012198\|Ga0137364_10436677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	981	Open in IMG/M
3300012201\|Ga0137365_10457147	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300012201\|Ga0137365_11047878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300012203\|Ga0137399_10213140	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300012205\|Ga0137362_10600758	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300012205\|Ga0137362_11357477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300012207\|Ga0137381_10366993	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300012208\|Ga0137376_10245682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1552	Open in IMG/M
3300012208\|Ga0137376_10607772	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300012285\|Ga0137370_10345060	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012350\|Ga0137372_10690457	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	740	Open in IMG/M
3300012354\|Ga0137366_10504209	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300012354\|Ga0137366_11114962	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012357\|Ga0137384_11075211	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300012360\|Ga0137375_11075219	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300012683\|Ga0137398_10480300	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300012897\|Ga0157285_10306221	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300012924\|Ga0137413_10412834	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300012924\|Ga0137413_10948556	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300012925\|Ga0137419_10092757	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300012972\|Ga0134077_10001254	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	7002	Open in IMG/M
3300012975\|Ga0134110_10420761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	596	Open in IMG/M
3300012976\|Ga0134076_10571770	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300014154\|Ga0134075_10004981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4940	Open in IMG/M
3300015356\|Ga0134073_10071258	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300015356\|Ga0134073_10367574	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300015374\|Ga0132255_101700618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300015374\|Ga0132255_105432793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	539	Open in IMG/M
3300016319\|Ga0182033_11538322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	601	Open in IMG/M
3300016422\|Ga0182039_10994119	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300018028\|Ga0184608_10522334	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300018075\|Ga0184632_10111062	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300018433\|Ga0066667_10571362	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300018433\|Ga0066667_12193527	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300019865\|Ga0193748_1029001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	518	Open in IMG/M
3300019878\|Ga0193715_1079305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300019887\|Ga0193729_1190081	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300019999\|Ga0193718_1071363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	742	Open in IMG/M
3300020002\|Ga0193730_1001675	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6012	Open in IMG/M
3300020018\|Ga0193721_1098081	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300021073\|Ga0210378_10148589	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300021080\|Ga0210382_10059992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1517	Open in IMG/M
3300021411\|Ga0193709_1097342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	636	Open in IMG/M
3300021418\|Ga0193695_1035106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300022694\|Ga0222623_10191230	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300022756\|Ga0222622_10987227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	618	Open in IMG/M
3300025885\|Ga0207653_10156410	All Organisms → cellular organisms → Bacteria → Proteobacteria	841	Open in IMG/M
3300025918\|Ga0207662_11364261	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300025921\|Ga0207652_11899373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	501	Open in IMG/M
3300026308\|Ga0209265_1150023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	599	Open in IMG/M
3300026312\|Ga0209153_1048156	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300026323\|Ga0209472_1002766	All Organisms → cellular organisms → Bacteria	9774	Open in IMG/M
3300026328\|Ga0209802_1181232	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300026333\|Ga0209158_1334856	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026475\|Ga0257147_1050503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300026523\|Ga0209808_1064731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1616	Open in IMG/M
3300026664\|Ga0207558_101334	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300026920\|Ga0208575_1014821	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300027717\|Ga0209998_10132403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300027876\|Ga0209974_10034521	All Organisms → cellular organisms → Bacteria	1680	Open in IMG/M
3300027903\|Ga0209488_10243640	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300028799\|Ga0307284_10309284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300028819\|Ga0307296_10030745	All Organisms → cellular organisms → Bacteria	2832	Open in IMG/M
3300028881\|Ga0307277_10207064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	861	Open in IMG/M
3300028884\|Ga0307308_10380931	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300031226\|Ga0307497_10206019	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300031474\|Ga0170818_108628668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	723	Open in IMG/M
3300031716\|Ga0310813_10900467	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300031846\|Ga0318512_10335327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	755	Open in IMG/M
3300031908\|Ga0310900_11130717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300031910\|Ga0306923_12571076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	500	Open in IMG/M
3300031943\|Ga0310885_10447427	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300031954\|Ga0306926_10459175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1569	Open in IMG/M
3300032261\|Ga0306920_101831959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	855	Open in IMG/M
3300033412\|Ga0310810_10191758	All Organisms → cellular organisms → Bacteria	2321	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.41%
Host-Associated	Host-Associated	10.87%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.06%
Plants	Host-Associated → Plants	10.87%
Aquatic	Environmental → Aquatic	4.35%
Solid Waste	Engineered → Solid Waste	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.62%
Sediment	Environmental → Aquatic → Sediment	2.90%
Freshwater	Environmental → Aquatic → Freshwater	1.45%
Roots	Host-Associated → Plants → Roots	0.72%
Grass	Engineered → Solid Waste → Grass	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.36%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.45%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Composting	Engineered → Solid Waste → Grass → Composting	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.45%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.45%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019865	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026664	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055931

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_03895080	2170459005	Grass Soil	VILVNRGKQHATGIGRQILHALAQEKSEPSNEGEPDPDAD
4NP_03035260	2170459021	Switchgrass, Maize And Mischanthus Litter	GGLPNTSTWIGFTPEQHIGVVLLCNRGKQPATKIGRQILHALAQDQSQPSTQGEPDPNAN
2222022332	2209111022	Grass Soil	ILVNRGKQQATGIGRQILHALAQEKSEPSNEGEPDPDAD
ICCgaii200_09053412	2228664021	Soil	VILVNRGKQHATGIGRQILHALAQEKSEPSTEGEPEQDTD
F24TB_100785544	3300000550	Soil	KLGVVILVNRGKQHATGIGRQMLHALAQDQSQPSTEGELEPDGD*
JGI11643J11755_115981732	3300000787	Soil	LVNRGKQHATGIGRQILHALAQDQSTPSSEGEPNPDTD*
JGI1027J12803_1050535843	3300000955	Soil	GVIILINRGKQHATGIGRQILHALAQDQSEPSPEGESEPDNN*
JGI1027J12803_1069967733	3300000955	Soil	GFAPQQKIGAVILCKRGKQHATQIGQQILHALANNQSEPSTEGESEPDRD*
JGI24036J26619_100734812	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	NTSTYIGFAPQRKIGVVILVNRGRQNATIYGRQIIHALAQDQSEPSSEGEANPDNE*
JGI25405J52794_100691422	3300003911	Tabebuia Heterophylla Rhizosphere	STYIGFVPRKKLGVVILVNRGKQRATIYGRQIIHALAQDQAQPSSEGEPNPDNE*
Ga0062589_1014696611	3300004156	Soil	MDNTQSTYIGFAPQRKLGVVILVNRGKQHATGIGRQIIHELAQDQSEPSTEGEPNPDSD*
Ga0062595_1009337342	3300004479	Soil	NTSTWIGFAPQRHIGAVILCNRGKQPATRIGRQLLHALAQDQSQPSTEGKPDTDAN*
Ga0066674_104525351	3300005166	Soil	GVVILVNRGKQHATGIGRRILHALAQDQSVPSTEGEPEPDGD*
Ga0066685_103072711	3300005180	Soil	PQKKLGVIVLVNRGKQHATGIGRQIIHALAQDQSQPSNEGEANPDND*
Ga0066671_106872342	3300005184	Soil	YIGFAPQKKLGVVILVNRGRQKATIYGRQIIHALAQDRSAPSNEGEANPDE*
Ga0066675_110349112	3300005187	Soil	VVVLVNRGKQHAVEFGRQIIHALAQDQSQPSSEGEADPDSD*
Ga0065705_101584231	3300005294	Switchgrass Rhizosphere	QRKLGVVILVNRGKQHATGIGRQILHALAQDQSEPSNEGEPEPDGD*
Ga0066388_1064931002	3300005332	Tropical Forest Soil	GVVILCNRGKQPATRIGRQLLHALARDQSQPSTEGKPDPDAN*
Ga0070668_1010909351	3300005347	Switchgrass Rhizosphere	VVILVNRGKQNATVYGRKLLHALAQDQSQPSNEGETEPDQE*
Ga0070667_1000501321	3300005367	Switchgrass Rhizosphere	GLPNTSTWIGFTPQRHIGVVILCNRGKQPATRIGRQLLHALAQDQSQASTEGQPDPNAN*
Ga0070714_1002936011	3300005435	Agricultural Soil	VILVNRGKQHATGIGRQILHALAQDQSQPLTEGEPEPDTD*
Ga0070713_1002699343	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VILVNRGKQHATGIGRQILHVLAQDQSQPSTEGEPEPDTD*
Ga0070705_1000191661	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	KNGGLPNTSTWIGFTPQRHIGVVILCNRGKQPATRIGRQLLHALAQDQSQASTEGQPDPNAN*
Ga0070686_1006112251	3300005544	Switchgrass Rhizosphere	TSTWIGFTPQRHIGVVILCNRGKQPATRIGRQLLHALAQDQSQASTEGQPDPNAN*
Ga0066707_106895011	3300005556	Soil	GFAPQKKLGVVILVNRGKQHATVIGRHIIHALAQDQSAPSSEGEPNPDNN*
Ga0066698_110705371	3300005558	Soil	GKQHATGIGRQILHALAQDQSEPSTEGESDPDND*
Ga0066654_102005901	3300005587	Soil	VNRGKQHATGIGRQIIHALAQDQSQPSNEGEANPDND*
Ga0066654_104973862	3300005587	Soil	NNTSTYIGFAPQRKLGVVILVNRGKQHDTGIARQILHALAQGKSEPSAEGEPEQDTD*
Ga0066903_1076427542	3300005764	Tropical Forest Soil	PNTSTWIGFAPEQKIGAVILCNRGKQPATKIGRQLLHALAQDRSEPSAEGEPEPDRE*
Ga0066651_102420382	3300006031	Soil	QKKLGVVILVNRGRQNATIYGRQIIHALAQNQSQPSSEGEANPDDE*
Ga0066651_105038601	3300006031	Soil	APQQKLGVVILVNRGKQRATGIGRQILHALAQDQSKPSTEGEADPDSD*
Ga0075365_108013771	3300006038	Populus Endosphere	STYIGFARQQKLGVVILSNRGEQNATKVGRQILHALAQEKAEPLDEGAEPD*
Ga0070712_1004344141	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QKKLGVVILVNRGKQHATGIGRQIIHALAQEQSEPSREGEPNPDNE*
Ga0074053_100642102	3300006575	Soil	IGFAPQSKLGVVILVNRGKQHATGIGRQILHALAQEKSEPSNEGEPDPDAD*
Ga0066665_114024082	3300006796	Soil	IILVNRGKQHATGIGRQILHALAQDQSEPSTEGESDPDND*
Ga0075428_1013390691	3300006844	Populus Rhizosphere	APQPKLAIVILVNRGKQQPTTNGRQILHALAQEKSEPSNEGEPEPDAD*
Ga0075425_1015051731	3300006854	Populus Rhizosphere	GFAPRRKLGVVILVNRGKQHATGIGRQILHALAQDQSQPSSEGESNPDAE*
Ga0075425_1027255113	3300006854	Populus Rhizosphere	NTSTYIGFARQQKLGVVILSNRGEQDATKVGRQILHALAQEMAEPLVEGAEPD*
Ga0066710_1019094091	3300009012	Grasslands Soil	VIILVNRGKQHATGIGRQILHALAQDQSEPSTEGESDPDND
Ga0066710_1038191532	3300009012	Grasslands Soil	RQKLGVIILVNRGKQHATGIGRQILHALAQDQSEPSTEGELDPDND
Ga0105245_117037911	3300009098	Miscanthus Rhizosphere	NTSTWIGFTPQRHIGVVILCNRGKQPATRIGRQLLHALAQDQSQASTEGQPDPNAN*
Ga0075418_114848592	3300009100	Populus Rhizosphere	FAPQRKLGVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDAD*
Ga0066709_1002512054	3300009137	Grasslands Soil	MEAPQRKLGVVILVNRGKQHATGIGRQILHALAQDQSEPSTDGAEPDPDID*
Ga0066709_1003684201	3300009137	Grasslands Soil	STYIGFAPQQKLGVVILVNRGKQRATGIGRQILHALAQDQSEPSSEGEAEPDKD*
Ga0066709_1014247143	3300009137	Grasslands Soil	VILVNRGKQHATGIGRQIVHALAQEQSEPSSEGEADPDSD*
Ga0066709_1035150591	3300009137	Grasslands Soil	RQKLGVIILVNRGKQHATGIGRQILHALAQDQSEPSTEGELDPDND*
Ga0111538_124264722	3300009156	Populus Rhizosphere	STYIGFARQQKLGVVILSNRGRQNATKVGRQILHALAQEKAEPLDEGPEPD*
Ga0105248_133167721	3300009177	Switchgrass Rhizosphere	KLGVVILVNRGKQHATGIGRQILHALAQDQSQPSTEGEPEPDTD*
Ga0134070_103035052	3300010301	Grasslands Soil	VNRGKQHATGIGRLIIHALAQNQSQPSSEGEANPDDE*
Ga0134082_102253393	3300010303	Grasslands Soil	PQQKLGIVILVNRGKQHATGIGRQILHALAQDQSEPSSEGEAEPDKD*
Ga0134067_100713721	3300010321	Grasslands Soil	NTSTYIGFAPQKQLGVVILVNRGKQHATGIGRLIIHALAQNQSQPSSEGEANPDDE*
Ga0134064_101483712	3300010325	Grasslands Soil	VVILVNRGKQHATGFGRQILHALAQEKSEPSNEGESDPDAD*
Ga0134111_100266433	3300010329	Grasslands Soil	GFAPQQKLGIVILVNRGKQHATGIGRQILHALAQDQSEPSSEGEAEPDKD*
Ga0134080_102029072	3300010333	Grasslands Soil	STYIGFAPQQKLGVVILVNRGKQRATGIGRQILHALAQDQSKPSTEGEADPDSD*
Ga0134080_102206691	3300010333	Grasslands Soil	TYIGFAPQPKLGVVILVNRGKQHATGIGRQILHALAQDQSEPSSEGEADPDSD*
Ga0134080_105715512	3300010333	Grasslands Soil	PQRKLGVVILVNRGKQHATGIGRQILHALAQEKSEPSTEGEPEQDTD*
Ga0126379_101092334	3300010366	Tropical Forest Soil	GFAPQRKLGVVILVNRGKQHATGIGRQILHAIAQDQSQLSTEGEPNPDVN*
Ga0134125_120687682	3300010371	Terrestrial Soil	APQRKLAVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDAD*
Ga0126381_1015258073	3300010376	Tropical Forest Soil	VNRGRQGATRIGRQILHALAQEHSEPLGEGAEPD*
Ga0134127_101309533	3300010399	Terrestrial Soil	YIGFARQQKLGVVILSNRGEQDATKVGRQILHALAQEMAEPLVEGAEPD*
Ga0137364_101051004	3300012198	Vadose Zone Soil	STYIGFAPQQKLGVVILVNRGKQRATGIGRQILHALAQDQSEPSSEGEAEPG*
Ga0137364_101963053	3300012198	Vadose Zone Soil	STYIGFAPQQKLGVVILVNRGKQRATGIGRQILHALAQDQSKPSTEGEADPNSD*
Ga0137364_104078633	3300012198	Vadose Zone Soil	YIGFAPERKLGVAILVNRGKQLATGIGRQILHALAQDQSLPSMEGEPEPDRD*
Ga0137364_104366773	3300012198	Vadose Zone Soil	ARQQKLGVVILSNRGRQNATKVGRQILHALAQEKAEPLDEGPEPD*
Ga0137365_104571471	3300012201	Vadose Zone Soil	TSTYIGFAPRQKLGVIILVNRGKQHATGIGRQILHALAQDQSQPSTEGESDPDNG*
Ga0137365_110478782	3300012201	Vadose Zone Soil	QKLGVVILVNRGKQHATKIGRQILHALAQETSEPSSEGAEPDPDID*
Ga0137399_102131401	3300012203	Vadose Zone Soil	YIGFTPQRKLAVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDAD*
Ga0137362_106007582	3300012205	Vadose Zone Soil	NTSTYIGFAPQPKIGVVILVNRGKQHATGIGRQILHALAQDQSEPSSEGEADPDSD*
Ga0137362_113574772	3300012205	Vadose Zone Soil	PNTSTYIGFAPQRKLGVVILVNRGKQRATGIGRQIIHALAQDQSAPSSEGAEPAPDID*
Ga0137381_103669933	3300012207	Vadose Zone Soil	VNRGKQHATVFGRQILHAPAQDQSQPSTEGESNPDNG*
Ga0137376_102456823	3300012208	Vadose Zone Soil	VVLVNRGKQHAVEFGRQIIHALAQDQSQPSSEGEADPDSD*
Ga0137376_106077722	3300012208	Vadose Zone Soil	PQRKLAVVILVNRGKQHATGFGRQILHALAQEKSEPSNAGEPDPDAD*
Ga0137370_103450601	3300012285	Vadose Zone Soil	QQKLGVVILVNRGKQRATGIGRQILHALAQDQSEPSSEGEAEPG*
Ga0137372_106904572	3300012350	Vadose Zone Soil	PQRKLGVVILVNRGKQHATGFGRQILHALAQEKSEPSNAGEPDPDAD*
Ga0137366_105042092	3300012354	Vadose Zone Soil	GFAPRQKLGIIILVNRGKQHATGIGRQILHALAQDQSQPSTEGESDPDND*
Ga0137366_111149621	3300012354	Vadose Zone Soil	LVNRGKQHATGIGRQIIHTLAQDQSEPSSEGEPNPDND*
Ga0137384_110752111	3300012357	Vadose Zone Soil	TYIGFAPQQKLGVVILVNRGKQHATGIGRQILHALAQDQSAPSSEGEGDPDSD*
Ga0137375_110752192	3300012360	Vadose Zone Soil	RGRQNATIYGRQIIHALAQDQSQPSSEGEANPDDE*
Ga0137398_104803001	3300012683	Vadose Zone Soil	VVILVNRGKQHATGIGRRILHALAQDQSVPSTEGEPEPDGD*
Ga0157285_103062211	3300012897	Soil	TSTYIGFARQQKLGVVILSNRGEQDATKVGRQILHALAQEMAEPLVEGAEPD*
Ga0137413_104128341	3300012924	Vadose Zone Soil	TSTYVGFAPQRKLAVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDAD*
Ga0137413_109485561	3300012924	Vadose Zone Soil	TSTYIGFAPQRKLGVVILVNRGKQHATGIGRQILHALAQEKSEPSTEGEPEQDTD*
Ga0137419_100927573	3300012925	Vadose Zone Soil	QNTSTYIGFASQQKLGVVILVNRGKQHATGIGRQIIHALAQDQSAPSSEGEPNPDND*
Ga0134077_100012549	3300012972	Grasslands Soil	GKQRATGIGRQILHALAQDQSKPSIEGEADPDSD*
Ga0134110_104207612	3300012975	Grasslands Soil	NRGKQQPTGIGRQILHALAQAQSQPSNEGEPEPDTD*
Ga0134076_105717702	3300012976	Grasslands Soil	VVILVNRGRQNATIYGRQIINALAQNQSQPSSEGEANPDDE*
Ga0134075_100049817	3300014154	Grasslands Soil	IVILVNRGKQHATGIGRQILHALAQDQSKPSTEGEADPDSD*
Ga0134073_100712581	3300015356	Grasslands Soil	IGFAPQKKLGVVILVNRGKQHATGIGRQIIHALAQDQSQPSNEGEANPDND*
Ga0134073_103675741	3300015356	Grasslands Soil	KKLGVVILVNRGRQNATIYGRQIIHALAQNQSQPSSEGEANPDDE*
Ga0132255_1017006183	3300015374	Arabidopsis Rhizosphere	NNTSTYVGFAPQRKLAVVILVNRGKQRATVIGRQLLHALAQDQSQPSNEGEPEPDQE*
Ga0132255_1054327931	3300015374	Arabidopsis Rhizosphere	IGLAPQRKLGVVILVNRGKQHPTGIGRQILHALAQEKSEPSTEGEPEQDTD*
Ga0182033_115383222	3300016319	Soil	VILVNRGKQHATGIGRQMLHALAQEKSEPSNEGEPDPNAG
Ga0182039_109941192	3300016422	Soil	NTSTYIGFARQQKLGVVLLSNRGPGQQNALKVGRQILHALAHEKAEPLDEGPNPTSSG
Ga0184608_105223341	3300018028	Groundwater Sediment	MSSTSTYIGFARQQKLGVVILSNRGRQNATKVGRQILHALAQEKAEPLDEGPEPD
Ga0184632_101110622	3300018075	Groundwater Sediment	VLVNRGKQHATGIGRQILHALAQEKSEPSTEGESDPDGD
Ga0066667_105713621	3300018433	Grasslands Soil	STYIGFAPQRKLGVVILVNRGKQHATGIGRQIIHALAQDQSQPSSEGEPNPDID
Ga0066667_121935272	3300018433	Grasslands Soil	GFATQKKLGVVILVNRGRQKATIYGRQTIHALAQDPSAPSNEGEVNPDE
Ga0193748_10290012	3300019865	Soil	LNNTSTYVGFAPQRKLAVVILVNRGKQQATGIGRQILHALAQEKSEPSNEGESDPDAD
Ga0193715_10793051	3300019878	Soil	GFAPQQKLGVVILVNRGKQHATGIGRQILHALARDQSEPSNEGEGDLDND
Ga0193729_11900811	3300019887	Soil	RKLGVVILVNRGKQHATGIGRQIIHALAQDQSEPSSEGELNPDDD
Ga0193718_10713632	3300019999	Soil	NRGKQHATGIGRQILHALAQEKSEPSTEGEPEQDTD
Ga0193730_10016758	3300020002	Soil	LGIVILVNRGKQHATGIGRQIIHALAQDQSEPTSEGESNPDND
Ga0193721_10980812	3300020018	Soil	GVVILVNRGKQHATGIGRQIIHALAQDQSAPSSEGEANPDND
Ga0210378_101485892	3300021073	Groundwater Sediment	VVILVNRGKQHATGIGRQILHALAQEKSEPSNEGELEPDTD
Ga0210382_100599921	3300021080	Groundwater Sediment	RGKQHATGIGRQIIHALAQDQSQPSNEGEPNPDND
Ga0193709_10973422	3300021411	Soil	STYIGFAPQPKLGIVILVNRGKQQPTGIGRQILHALAQEKSEPANEGEPEPDTD
Ga0193695_10351061	3300021418	Soil	IGFAPRQKLGVVILVNRGKQHATGIGRQIIHVLAQDQSAPSTEGESDPDND
Ga0222623_101912302	3300022694	Groundwater Sediment	PQQKLGVVILVNRGKQHATKIGRQILHALAQDQSAPSSEGAEPNPDAD
Ga0222622_109872272	3300022756	Groundwater Sediment	LGVVILVNRGKQHATGIGRQMLHALAQEKSEPSTEGEPEQDTD
Ga0207653_101564102	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	QKLGVVILSNRGEQDATKVGRQILHALAQEMAEPLVEGAEPD
Ga0207662_113642612	3300025918	Switchgrass Rhizosphere	GRKLGVVILVNRGKQDATGIGRQIIHALAQDQSQPSSEGEPNPDNE
Ga0207652_118993732	3300025921	Corn Rhizosphere	PQPKIGIVILLNRGKQQPTRNGRQILHVLAQDQSQPSTEGEPEPDTD
Ga0209265_11500232	3300026308	Soil	NNTSTYIGFAPQRKLGVVILVNRGKQHDTGIARQILHALAQGKSEPSAEGEPEQDTD
Ga0209153_10481562	3300026312	Soil	QKKLGVVVLVNRGKQHAVEFGRQIIHALAQDQSQPSNEGEANPDND
Ga0209472_100276612	3300026323	Soil	STYIGFALQKKIGAVILVNRGRQNATIYGRQIIHALAQNQSQPSSEGEANPDDE
Ga0209802_11812322	3300026328	Soil	VVVLVNRGKQHAVEFGRQIIHALAQDQSQPSNEGEANPDND
Ga0209158_13348562	3300026333	Soil	TNTSTYIGFAPQKKLGVIILVNRGKQHAVEFGRQIIHALAQDQSQPSNEGEANPDNE
Ga0257147_10505032	3300026475	Soil	ILVNRGKQHATGIGRQILHALAQEKSEPSTEGEPEPDGE
Ga0209808_10647311	3300026523	Soil	ILVNRGKQHATGIGRQIIHALAQDQSAPSNEGEPNPDE
Ga0207558_1013342	3300026664	Soil	QRKIGVVILVNRGRQNATIYGRQIIHALAQDQSEPSSEGEANPDNE
Ga0208575_10148212	3300026920	Soil	VVILVNRGKQHATGIGWQIIHALAQDQSEPSREGEPNPDNE
Ga0209998_101324032	3300027717	Arabidopsis Thaliana Rhizosphere	NGGLNNTSTYVGFAPQRKLAVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDA
Ga0209974_100345213	3300027876	Arabidopsis Thaliana Rhizosphere	IVILINRGKQHATGIGRQILHALAQDQSEPSNEGEPNPDTD
Ga0209488_102436402	3300027903	Vadose Zone Soil	TSTYVGFAPQRKLAVVILVNRGKQHATGIGRQILHALAQENSEPSNEGESDPDAD
Ga0307284_103092842	3300028799	Soil	VNRGKQHATGIGRQILHALAQEKSEPSNAGEPEQDAD
Ga0307296_100307454	3300028819	Soil	NRGKQHATGIGRQIIHALAQDQSQPSNEGEPNPDND
Ga0307277_102070642	3300028881	Soil	PQRKLGVVILVNRGKQHATGIGRQILHALAQEKSEPSTEGEPEQDTD
Ga0307308_103809312	3300028884	Soil	YIGFAPRQKLGVVILVNRGKQHATGIGRQILHALAQDQSEPSTQGESDPDND
Ga0307497_102060192	3300031226	Soil	TSTYIGFAPQSKLGVVILVNRGKQQATGIGRQILHALAQENSEPSNEGESDPDAD
Ga0170818_1086286681	3300031474	Forest Soil	GLNNTSTCIGFAPQRKLGVVILVNRGKQHATGIGRQILQALAQEKSEPSNEGEPEPDTD
Ga0310813_109004672	3300031716	Soil	GVVILVNRGKQHATGSGRQILHALAQDQSEPSSEGEPNPDNE
Ga0318512_103353272	3300031846	Soil	PNTSTWIGFTPQRHIGVILLCDRGKQPATKIGRQLLHALAQDQSQPSTEGEPNPDAN
Ga0310900_111307171	3300031908	Soil	IILVNRGKQHATGFGRQILHALAQEQSEPSNEGEPDPEGN
Ga0306923_125710761	3300031910	Soil	FTPQRHIGVILLCDRGKQPATKIGRQLLHALAQDQSQPSTEGEPNPDAN
Ga0310885_104474271	3300031943	Soil	YIGFARQQKLGVVILSNRGEQDATKVGRQILHALAQEMAEPLVEGAEPD
Ga0306926_104591751	3300031954	Soil	VILVNRGKQHATGIGRQILHALAQDQSQPSTEGEPEQDED
Ga0306920_1018319592	3300032261	Soil	NTSTWIGFTPQRHIGVILLCDRGKQPATKIGRQLLHALAQDQSQPSTEGEPNPDAN
Ga0310810_101917581	3300033412	Soil	GFAPQRELGIVILINRGKQHATGIGRQILHALAQDQSEPSNEGEPNPDTD

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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