NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026664

3300026664: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026664 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072137 | Ga0207558
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size7295623
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.42Long. (o)-89.33Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F001033Metagenome / Metatranscriptome799Y
F001757Metagenome / Metatranscriptome641N
F004468Metagenome / Metatranscriptome437Y
F006680Metagenome / Metatranscriptome367Y
F008758Metagenome / Metatranscriptome328Y
F009373Metagenome / Metatranscriptome319Y
F012827Metagenome / Metatranscriptome277Y
F023668Metagenome209Y
F024436Metagenome / Metatranscriptome206N
F039084Metagenome / Metatranscriptome164Y
F055839Metagenome / Metatranscriptome138Y
F055931Metagenome / Metatranscriptome138Y
F097907Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207558_100047All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1383Open in IMG/M
Ga0207558_100061All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1277Open in IMG/M
Ga0207558_100120All Organisms → cellular organisms → Bacteria1071Open in IMG/M
Ga0207558_100197All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium936Open in IMG/M
Ga0207558_100541All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae701Open in IMG/M
Ga0207558_100659All Organisms → cellular organisms → Bacteria664Open in IMG/M
Ga0207558_101166Not Available570Open in IMG/M
Ga0207558_101321All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium551Open in IMG/M
Ga0207558_101334All Organisms → cellular organisms → Bacteria549Open in IMG/M
Ga0207558_101577All Organisms → cellular organisms → Bacteria525Open in IMG/M
Ga0207558_101735All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium511Open in IMG/M
Ga0207558_101796All Organisms → cellular organisms → Bacteria506Open in IMG/M
Ga0207558_101860All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207558_100047Ga0207558_1000471F001033MKFVSRTKSMAVPHQILGASANEKRELMMCGHSLIARLTIAVFVFQILGVTSVIHAERPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFGT
Ga0207558_100061Ga0207558_1000613F004468MTTRSRLRVFHFADYESTTISEKALCQLQDREAQERGARDLQKPAAQATPGLIIAVVKY
Ga0207558_100120Ga0207558_1001201F000268MLMRVVAVMLLLSAGIAAEAMSYSFVSNASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMVFPDPFDE
Ga0207558_100197Ga0207558_1001972F024436YSVICAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLAKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTVGFITLIVYRLVTGEAMR
Ga0207558_100541Ga0207558_1005412F006680MKISKFLWSVLVAFAAVALIAPQQVEAIVVDGRIKGQIQFTGSGTVTESTGINSNAINSNGINELEFNGENFPHG
Ga0207558_100659Ga0207558_1006591F012827RATRQFHQSRIDLLAMLDIDANDERFSLSLDPQTIRPARMVVPLRGDHRFDVVDAGEVFAGISNLEELEIGPHAIQLHREIFGLHLDFENLPQIGDCLVAAERQERDFLLRIISRGKERKALDVVPVKVRERDRDLFLLVADGAKVSAQISQSRARVNDGDAVHIGERDLQARRVASELLKTGIADGDGSPRTIKT
Ga0207558_101166Ga0207558_1011661F055839PDLTVEWEHRHHMRVVESMKHLVLASALILAGSTAAKPSDINFGETRTRFQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207558_101321Ga0207558_1013211F008758TNAAKVWVVYQKNMRKTILLAGSALLLGTTVIAGDFAAEPLEFRNPQQDLFDNLSEMLRETKELQSCSRQQQEALQRFLNMGISYNAAALMAHSQYPCDSTDQ
Ga0207558_101334Ga0207558_1013342F055931QRKIGVVILVNRGRQNATIYGRQIIHALAQDQSEPSSEGEANPDNE
Ga0207558_101577Ga0207558_1015771F097907MRKEKLKANFKKDRSIPNRNTTRPENVSRKEIKQMAHHAPVRRAASKAR
Ga0207558_101577Ga0207558_1015772F039084TADGRVIDASKIRKDSKVQVHYVKDGDDMLIDKVIVTKDRD
Ga0207558_101735Ga0207558_1017352F001757AMMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207558_101796Ga0207558_1017961F009373MSRTLKAIERHMTQSSKTEVVERSAAKLVGEWQQRGPETLSGRILRKLRLAFAPSQSTKLATANR
Ga0207558_101860Ga0207558_1018601F023668IAQTDANGKSDEQLLRKLIREDNEGKNVIKRTADSIFVSGAFPRPMIGHAVQEALGSRKDRSNESRKGEVVRLVSSQSGDMAEEFGNFTLSFDQPNKKHISFDGSYLRVWRKINGEWLEDAFFARPNEPEEKKKSDT
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