NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F062853

Metagenome Family F062853

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F062853
Family Type Metagenome
Number of Sequences 130
Average Sequence Length 67 residues
Representative Sequence MTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA
Number of Associated Samples 105
Number of Associated Scaffolds 130

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 73.85 %
% of genes near scaffold ends (potentially truncated) 26.15 %
% of genes from short scaffolds (< 2000 bps) 87.69 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.846 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(17.692 % of family members)
Environment Ontology (ENVO) Unclassified
(24.615 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(35.385 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 33.68%    Coil/Unstructured: 66.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.70
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 130 Family Scaffolds
PF07920DUF1684 9.23
PF11941DUF3459 6.92
PF07690MFS_1 6.92
PF04075F420H2_quin_red 5.38
PF06445GyrI-like 5.38
PF00704Glyco_hydro_18 3.85
PF04294VanW 3.85
PF00226DnaJ 3.85
PF13191AAA_16 3.08
PF08327AHSA1 3.08
PF02518HATPase_c 3.08
PF00144Beta-lactamase 2.31
PF02146SIR2 2.31
PF00903Glyoxalase 1.54
PF00892EamA 1.54
PF12681Glyoxalase_2 1.54
PF07730HisKA_3 1.54
PF02254TrkA_N 1.54
PF13796Sensor 1.54
PF00072Response_reg 0.77
PF07631PSD4 0.77
PF069833-dmu-9_3-mt 0.77
PF00083Sugar_tr 0.77
PF10604Polyketide_cyc2 0.77

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 130 Family Scaffolds
COG3358Uncharacterized conserved protein, DUF1684 familyFunction unknown [S] 9.23
COG2720Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domainsDefense mechanisms [V] 3.85
COG0846NAD-dependent protein deacetylase, SIR2 familyPosttranslational modification, protein turnover, chaperones [O] 2.31
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 2.31
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 2.31
COG2367Beta-lactamase class ADefense mechanisms [V] 2.31
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 1.54
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 1.54
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 1.54
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 1.54
COG2764Zn-dependent glyoxalase, PhnB familyEnergy production and conversion [C] 0.77
COG3865Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferaseGeneral function prediction only [R] 0.77

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.85 %
UnclassifiedrootN/A26.15 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459018|G1P06HT01AZU09Not Available528Open in IMG/M
3300000854|WSSedB2T2DRAFT_1009528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi917Open in IMG/M
3300001213|JGIcombinedJ13530_101116398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria922Open in IMG/M
3300001213|JGIcombinedJ13530_101590935All Organisms → cellular organisms → Bacteria2195Open in IMG/M
3300002568|C688J35102_119496612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium706Open in IMG/M
3300002568|C688J35102_120353722All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300004048|Ga0055494_10144439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter546Open in IMG/M
3300004070|Ga0055488_10241378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi500Open in IMG/M
3300004072|Ga0055512_10097197All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300004114|Ga0062593_101090288All Organisms → cellular organisms → Bacteria → Terrabacteria group828Open in IMG/M
3300004155|Ga0066600_10461822All Organisms → cellular organisms → Bacteria → Terrabacteria group612Open in IMG/M
3300004282|Ga0066599_100839134All Organisms → cellular organisms → Bacteria → Terrabacteria group650Open in IMG/M
3300004463|Ga0063356_105620926Not Available538Open in IMG/M
3300004643|Ga0062591_100407888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_141126Open in IMG/M
3300004643|Ga0062591_101206411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14737Open in IMG/M
3300004778|Ga0062383_10095409All Organisms → cellular organisms → Bacteria1263Open in IMG/M
3300005329|Ga0070683_100687130All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300005329|Ga0070683_101819906Not Available585Open in IMG/M
3300005329|Ga0070683_102322322Not Available514Open in IMG/M
3300005330|Ga0070690_101573678Not Available532Open in IMG/M
3300005337|Ga0070682_101320574All Organisms → cellular organisms → Bacteria → Terrabacteria group613Open in IMG/M
3300005338|Ga0068868_100423488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1153Open in IMG/M
3300005339|Ga0070660_100805377Not Available790Open in IMG/M
3300005347|Ga0070668_101609800All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300005353|Ga0070669_100703625All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300005356|Ga0070674_101390081All Organisms → cellular organisms → Bacteria → Terrabacteria group628Open in IMG/M
3300005455|Ga0070663_100962556All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14740Open in IMG/M
3300005543|Ga0070672_100879150All Organisms → cellular organisms → Bacteria → Terrabacteria group791Open in IMG/M
3300005547|Ga0070693_100559140Not Available820Open in IMG/M
3300005548|Ga0070665_102565769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14511Open in IMG/M
3300005578|Ga0068854_100723164Not Available861Open in IMG/M
3300005764|Ga0066903_101095100All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300005764|Ga0066903_102232787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1056Open in IMG/M
3300006237|Ga0097621_101535170Not Available632Open in IMG/M
3300006755|Ga0079222_11452594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria639Open in IMG/M
3300009083|Ga0105047_10140771All Organisms → cellular organisms → Bacteria2897Open in IMG/M
3300009094|Ga0111539_10587337All Organisms → cellular organisms → Bacteria1297Open in IMG/M
3300009098|Ga0105245_10389021All Organisms → cellular organisms → Bacteria1391Open in IMG/M
3300009789|Ga0126307_10003546All Organisms → cellular organisms → Bacteria10696Open in IMG/M
3300009789|Ga0126307_10060550All Organisms → cellular organisms → Bacteria2969Open in IMG/M
3300009789|Ga0126307_10081973All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. DJM-142547Open in IMG/M
3300009789|Ga0126307_11657013All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300009840|Ga0126313_11284612Not Available605Open in IMG/M
3300010036|Ga0126305_11113196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium544Open in IMG/M
3300010042|Ga0126314_10075647All Organisms → cellular organisms → Bacteria2246Open in IMG/M
3300010045|Ga0126311_10116219All Organisms → cellular organisms → Bacteria1860Open in IMG/M
3300012212|Ga0150985_109573924All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300012897|Ga0157285_10267606Not Available568Open in IMG/M
3300012902|Ga0157291_10300223Not Available556Open in IMG/M
3300012905|Ga0157296_10138249Not Available714Open in IMG/M
3300012910|Ga0157308_10398028Not Available534Open in IMG/M
3300012943|Ga0164241_10326663All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300012951|Ga0164300_10251400All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300012957|Ga0164303_10590132All Organisms → cellular organisms → Bacteria → Terrabacteria group729Open in IMG/M
3300012958|Ga0164299_11106939Not Available592Open in IMG/M
3300012960|Ga0164301_10450055Not Available915Open in IMG/M
3300012986|Ga0164304_10361319Not Available1018Open in IMG/M
3300012988|Ga0164306_11757864All Organisms → cellular organisms → Bacteria → Terrabacteria group538Open in IMG/M
3300013297|Ga0157378_10454084All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300013315|Ga0173609_10583853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1912Open in IMG/M
3300014316|Ga0075339_1132429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria677Open in IMG/M
3300014316|Ga0075339_1233550All Organisms → cellular organisms → Bacteria → Terrabacteria group527Open in IMG/M
3300014317|Ga0075343_1137200All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300014325|Ga0163163_10309219All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300014325|Ga0163163_11197018Not Available822Open in IMG/M
3300014326|Ga0157380_11513179All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300014326|Ga0157380_12782410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium556Open in IMG/M
3300014969|Ga0157376_10353006All Organisms → cellular organisms → Bacteria1408Open in IMG/M
3300015200|Ga0173480_11108021Not Available529Open in IMG/M
3300015371|Ga0132258_11556492All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1669Open in IMG/M
3300015371|Ga0132258_12228547All Organisms → cellular organisms → Bacteria1375Open in IMG/M
3300015372|Ga0132256_101934994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14697Open in IMG/M
3300015374|Ga0132255_104302548Not Available604Open in IMG/M
3300017792|Ga0163161_10957860Not Available728Open in IMG/M
3300017965|Ga0190266_11137826Not Available535Open in IMG/M
3300018432|Ga0190275_10349489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1470Open in IMG/M
3300018465|Ga0190269_10015331All Organisms → cellular organisms → Bacteria3445Open in IMG/M
3300018465|Ga0190269_10264843All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300018465|Ga0190269_10953587All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi641Open in IMG/M
3300018481|Ga0190271_10608194Not Available1212Open in IMG/M
3300018481|Ga0190271_11114626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium912Open in IMG/M
3300019356|Ga0173481_10224146All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300019356|Ga0173481_10434319Not Available652Open in IMG/M
3300019361|Ga0173482_10133574Not Available946Open in IMG/M
3300021602|Ga0194060_10043546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2656Open in IMG/M
3300022309|Ga0224510_10656679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium612Open in IMG/M
3300023070|Ga0247755_1062503Not Available772Open in IMG/M
3300024055|Ga0247794_10287542All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium aurantiacum551Open in IMG/M
3300025920|Ga0207649_11184752All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300025927|Ga0207687_10459405All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300025932|Ga0207690_11679344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14531Open in IMG/M
3300025933|Ga0207706_11428671All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300025937|Ga0207669_10301591All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300025944|Ga0207661_10886727All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300026023|Ga0207677_10296713All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1334Open in IMG/M
3300026095|Ga0207676_11387041All Organisms → cellular organisms → Bacteria → Terrabacteria group699Open in IMG/M
3300027735|Ga0209261_10124778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia677Open in IMG/M
3300027841|Ga0209262_10078964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1522Open in IMG/M
3300027843|Ga0209798_10045197All Organisms → cellular organisms → Bacteria2306Open in IMG/M
3300028587|Ga0247828_10195141All Organisms → cellular organisms → Bacteria1051Open in IMG/M
3300028587|Ga0247828_10562502All Organisms → cellular organisms → Bacteria689Open in IMG/M
3300028596|Ga0247821_10358230All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300028596|Ga0247821_11033205Not Available552Open in IMG/M
3300028596|Ga0247821_11237774All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300028597|Ga0247820_11441429Not Available503Open in IMG/M
3300028732|Ga0302264_1026775All Organisms → cellular organisms → Bacteria1327Open in IMG/M
3300028733|Ga0302261_1037152All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300028802|Ga0307503_10015433All Organisms → cellular organisms → Bacteria2387Open in IMG/M
3300028812|Ga0247825_10766443All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300028889|Ga0247827_10118789All Organisms → cellular organisms → Bacteria1357Open in IMG/M
3300030294|Ga0311349_10048666All Organisms → cellular organisms → Bacteria3881Open in IMG/M
3300030336|Ga0247826_10085666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_141909Open in IMG/M
3300031256|Ga0315556_1302920Not Available537Open in IMG/M
3300031834|Ga0315290_10398004All Organisms → cellular organisms → Bacteria1207Open in IMG/M
3300032002|Ga0307416_102427299All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300032074|Ga0308173_11099490All Organisms → cellular organisms → Bacteria → Terrabacteria group741Open in IMG/M
3300032074|Ga0308173_12237797Not Available516Open in IMG/M
3300032256|Ga0315271_10016949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4914Open in IMG/M
3300032256|Ga0315271_10026501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi4023Open in IMG/M
3300032256|Ga0315271_10044158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3195Open in IMG/M
3300032256|Ga0315271_11897336Not Available510Open in IMG/M
3300033418|Ga0316625_101030359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi736Open in IMG/M
3300033521|Ga0316616_100552788All Organisms → cellular organisms → Bacteria1337Open in IMG/M
3300033550|Ga0247829_10536223Not Available971Open in IMG/M
3300033551|Ga0247830_10630831Not Available849Open in IMG/M
3300033551|Ga0247830_11592372Not Available523Open in IMG/M
3300034077|Ga0373899_012278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi863Open in IMG/M
3300034128|Ga0370490_0004249All Organisms → cellular organisms → Bacteria5350Open in IMG/M
3300034194|Ga0370499_0049491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1001Open in IMG/M
3300034257|Ga0370495_0005630All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3780Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil17.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil10.77%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil6.15%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment3.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.85%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.85%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment2.31%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater2.31%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.31%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland2.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.31%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil2.31%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.31%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.31%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.31%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.31%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.54%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.54%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.54%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.54%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.77%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment0.77%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.77%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.77%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.77%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.77%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.77%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.77%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.77%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.77%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.77%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.77%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.77%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.77%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.77%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.77%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.77%
SedimentEngineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment0.77%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.77%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459018Litter degradation MG2EngineeredOpen in IMG/M
3300000854Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B2 TuleEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004048Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2EnvironmentalOpen in IMG/M
3300004070Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004072Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004155Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11EnvironmentalOpen in IMG/M
3300004282Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sedimentEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004778Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3FreshEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300009083Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (megahit assembly)EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013315Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1BEngineeredOpen in IMG/M
3300014316Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1EnvironmentalOpen in IMG/M
3300014317Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300021602Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5mEnvironmentalOpen in IMG/M
3300022309Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300023070Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L096-311B-4EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027735Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027841Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028732Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4EnvironmentalOpen in IMG/M
3300028733Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300030294II_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031256Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10EnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033521Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_BEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034077Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3EngineeredOpen in IMG/M
3300034128Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16EnvironmentalOpen in IMG/M
3300034194Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17EnvironmentalOpen in IMG/M
3300034257Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2MG_015616302170459018Switchgrass, Maize And Mischanthus LitterVTDWIVDMSTDPLRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRLERWTYQCACGDVFVWERRAAA
WSSedB2T2DRAFT_100952823300000854WetlandTDPRRYPVVHHRHVNGTLRAERDRTPTVESGHDGRRLEHWTYACACGEVYTWDRRSTEGA
JGIcombinedJ13530_10111639823300001213WetlandMADWVVDISTDPRRYPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWTYACACGEIYAWDRRPAA*
JGIcombinedJ13530_10159093523300001213WetlandMADWIVNISTDPRRFPVVQHRHVNGTLPADRDRTPSVTLDHDGRRVERWTYACACGELYTWDRRPTTIHRT*
C688J35102_11949661213300002568SoilMTDWLVDASTDQRRFPVVQHRHANGTLRADRDRTPEVVAHLGQPRVERWTYQCACGDVFVWER
C688J35102_12035372213300002568SoilMADWLVDVSTDPRRFPVVHHRHANGTLRAERERTPSVTLDHEGRRVERWTYACACGELYSWDRRSAA*
Ga0055494_1014443913300004048Natural And Restored WetlandsMTDWLVDIATDPRRFPVVHHRHVNGTLRAERERTPSVTLDHDGRRVERWTYACACGEIYTWDRRPVA*
Ga0055488_1024137813300004070Natural And Restored WetlandsMTDWIVDISTDPRQYPVVHHRHVNGTLRAERDRTPSSTLDHDGRRVERWTYACACGEVYAWDRRTAA*
Ga0055512_1009719713300004072Natural And Restored WetlandsMADWLVDVSTDPRRYPVVHHRHVNGTLRAERDRTPTVESGHDGRRLEHWTYACACGEVYTWDRRSTEGA*
Ga0062593_10109028823300004114SoilVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA*
Ga0066600_1046182213300004155FreshwaterMADWLVDISTDPRRFPVVNHRHVNGTLRAERDRTPSVTLDHEGRRVERWTYACACGDLYTWDRRPAA*
Ga0066599_10083913413300004282FreshwaterMADWLVEISTDPRRYPVVHHRHLNGTLRAERDRTPSVTLDHEGRRVERWTYACACGEIYAWDRRPAA*
Ga0063356_10562092623300004463Arabidopsis Thaliana RhizosphereMTDWLVDVARDPRRFPVVRHRHANGTLQADRGRTPEVVAHLGQARVERWSYQCACGEVYVWERRPAA*
Ga0062591_10040788813300004643SoilMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYT
Ga0062591_10120641113300004643SoilMADWLVDVTTDPRRFPVVRHRHANGTLRAERERTPSVTLDHEGRRVERWTYACACGELYDWDRRPAA*
Ga0062383_1009540923300004778Wetland SedimentMADWLVDISTDPQRFPVVHHRHANGTLRAERDRTPSVTLDHEGRRVERWMYACACGELYSWDRRPSAA*
Ga0070683_10068713023300005329Corn RhizosphereMAQWIVDAPTDPRRFPTVQHRHPNGTLTVERDRTPTVSAPLGGPRVERWTHVCACGEVYVWERKVT*
Ga0070683_10181990613300005329Corn RhizosphereMAEWVVEVRSGPKQFPTVWHRHPNGTLRAERDRTPTVVQPLGGERVERWTYLCACGEVYLWERPW*
Ga0070683_10232232213300005329Corn RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVIAHLGAPRVERWTYQCACGDVFVWERRAVA*
Ga0070690_10157367813300005330Switchgrass RhizosphereRAMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0070682_10132057423300005337Corn RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFV
Ga0068868_10042348813300005338Miscanthus RhizosphereQAFDLQEAAMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAAA*
Ga0070660_10080537713300005339Corn RhizosphereGGRLDLLAPVYHVEHVFDMEVAMADWLVDVSVDPRRFPVIHHRHANGTLRAERERTPSVTLDHEGRRVERWTYACACGELYDWDRRPAA*
Ga0070668_10160980023300005347Switchgrass RhizosphereMTQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0070669_10070362523300005353Switchgrass RhizosphereMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0070674_10139008113300005356Miscanthus RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRAAA*
Ga0070663_10096255623300005455Corn RhizosphereMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAAA*
Ga0070672_10087915023300005543Miscanthus RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRMPEVVAHLGAPRVERWTYQCACGDVFVWERRAAA*
Ga0070693_10055914023300005547Corn, Switchgrass And Miscanthus RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRLERWSYQCACGDVFVWERRGAA*
Ga0070665_10256576913300005548Switchgrass RhizosphereMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAA
Ga0068854_10072316413300005578Corn RhizosphereLDSNTRSKSHEDRAMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0066903_10109510023300005764Tropical Forest SoilMADWLVDVSTDPRRFPVVHHRHANGTLRAERERMPSVTLDHEGRRVERWTYACACGELYTWDRRAAA*
Ga0066903_10223278723300005764Tropical Forest SoilMADWLVDVSTDPRRFPVVHHRHANGTLRAERERMPSVTLDHEGRRVERWTYACACGELYSWDRRSAA*
Ga0097621_10153517023300006237Miscanthus RhizosphereVTDWLVDMSTDPRRFPVVRHRHANGPLQADRDRTPEVVAHLGQPRVERWTYQCACGEVYVWERRPAA*
Ga0079222_1145259423300006755Agricultural SoilMTDWLVDISTDPRRFPVVRHRHVNGTLRAERDRSPSITMDHEGHRVERWTYACACGELYSWDRRSAA*
Ga0105047_1014077123300009083FreshwaterMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWSYACACGEIYSWDRRPAA*
Ga0111539_1058733733300009094Populus RhizosphereVLDSNTRSKSHEDRAMAQWIVDAPTDPRRFPTVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0105245_1038902123300009098Miscanthus RhizosphereVLDSNTRSKSHEDRAMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0126307_10003546133300009789Serpentine SoilMTDWLVDMATDPRRFPVIEHRHANGTLRAERDRTPEVVAHLGQPRVERWTYQCACGDVFVWERRPTS*
Ga0126307_1006055023300009789Serpentine SoilMTSWLVDMTIDQGRFPVVHHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGEVYVWERRRVA*
Ga0126307_1008197333300009789Serpentine SoilMTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPDVIARLGEPRLERWTYQCACGEVFVWERRGAA*
Ga0126307_1165701323300009789Serpentine SoilVTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTPEVVAHLGQPRVERWTYQCACGEVYVWERRPAA*
Ga0126313_1128461213300009840Serpentine SoilMTDWLVDVSTDHRRFPVVHHRHANGTLRAERSRTPEVAAHLGAARVERWTYQCPCGEVYAWERRGVA*
Ga0126305_1111319623300010036Serpentine SoilMTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTPDVVAHLGQPRVERWTYQCACGEVYVWERRPAA*
Ga0126314_1007564713300010042Serpentine SoilMTSWLVDMTIDQGRFPVVHHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGEV
Ga0126311_1011621923300010045Serpentine SoilMTSWLVDMTIDQGRFPVVHHRHANGTLRAERERTPEVVAHLGAPRVERWTYQCACGEVYVWERRRVA*
Ga0150985_10957392423300012212Avena Fatua RhizosphereMAQWIVDAPTDPRRFPNVQHRHPNGTLIVERDRTPTVSAPLGGPRVERWTHVCACGEVYVWERKVT*
Ga0157285_1026760623300012897SoilAVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA*
Ga0157291_1030022323300012902SoilVDMSTDPRRFPVVQHRHANGTLRADRDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRGAA*
Ga0157296_1013824923300012905SoilVTDWIVDMSTDPLRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRLERWTYQCACGDVFVWERRAAA*
Ga0157308_1039802813300012910SoilLLEGGAVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA*
Ga0164241_1032666323300012943SoilVTDWLVDISTDPRRFPVVRHRHANGTLQADRDRTPEVAAHLGQPRVERWTYLCACGEVYVWERRPAA*
Ga0164300_1025140023300012951SoilMTQWIVDAPTDPRRFPTVQHRHPNGTLTVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0164303_1059013223300012957SoilMADWLVDVSTDPRRFPVVRHRHANGTLHADRGRTPSVTLDHEGRRVERWTYACACGELYTWDRRAAA*
Ga0164299_1110693923300012958SoilLLEGGAVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRAAA*
Ga0164301_1045005523300012960SoilMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRDAA
Ga0164304_1036131913300012986SoilMIERPFYSARGLAVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRAAA*
Ga0164306_1175786413300012988SoilVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRLERWSYQCACGDVFV
Ga0157378_1045408433300013297Miscanthus RhizosphereMTQWIVDAPTDPRRFPSVQHRHPNGTLTVERDRTPTVSAPLGGPRVERWTHVCACGEVYVWERKVT*
Ga0173609_1058385323300013315SedimentMADWIVAISTDPRRFPVVDHRHPNGTLRAVRDRTPRVTADAVGRRLETWAYACACGDIYVWERRAA*
Ga0075339_113242923300014316Natural And Restored WetlandsMTDWLVEISTDPRRYPVVHHRHLNGTLRAERDRTPSVTLDHEGRRIERWTYACACGEIYAWDRRPAA*
Ga0075339_123355023300014316Natural And Restored WetlandsSTDPRQYPVVHHRHINGTLRAERDRTASITLDHEGRRVERWTYACACGEVYGWDRRPAA*
Ga0075343_113720013300014317Natural And Restored WetlandsMTDWLVDVSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGEPRVERWTYQCACGEVFVWDRRGAA
Ga0163163_1030921923300014325Switchgrass RhizosphereVYDIEQAFDLQEAAMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAAA*
Ga0163163_1119701813300014325Switchgrass RhizosphereDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA*
Ga0157380_1151317913300014326Switchgrass RhizosphereVLDSNTRSKSHEDRAMTQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT*
Ga0157380_1278241023300014326Switchgrass RhizosphereVTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTPDVVAHLGQPRVERWAYQCPCGEVYVWERRPAA*
Ga0157376_1035300633300014969Miscanthus RhizosphereMAEWVVEVRSGPKQFPTVWHRHPNGTLRAERDRTPTVIQPLGGERVERWTYLCACGEVYLWERPW*
Ga0173480_1110802123300015200SoilMAQWIVDAPTDPRRFPNVRHRHPNGTLTVERDRTPTVSAPLGGPRVERWTHVCACGEIYVWERKVT*
Ga0132258_1155649233300015371Arabidopsis RhizosphereVYDIEHPFELRRRAMADWLVDVSTDPRRFPVVHHRHANGTLRAERERTPAVTLDHEGRRVERWTYACACGELYSWDRRSAA*
Ga0132258_1222854723300015371Arabidopsis RhizosphereMAEWVVEVRSGPNQFPTVWHRHPNGTLRAERDRTPTVVQPLGGERVERWTYLCACGEVYVWERPS*
Ga0132256_10193499413300015372Arabidopsis RhizosphereVYDIEHPFEIRRRAMADWLVDVSTDPRRFPVVHHRHANGTLRAERERTPAVTLDHEGRRVERWTYACACGELYSWDRRSAA*
Ga0132255_10430254813300015374Arabidopsis RhizosphereVLDSNARSKSQEDGAMAQWIVDAPTDPRRFPTVQHRHPNGTLVVERDRTPTVSAPLGGPRVERWTHVCACGEIYVWERKVT*
Ga0163161_1095786023300017792Switchgrass RhizosphereVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRAAA
Ga0190266_1113782623300017965SoilMTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTPEVVAHLGQPRVEHWTYQCACGEVYVWERRPAA
Ga0190275_1034948933300018432SoilMTDWLVDITTDPRRFPVVRHRHVNGTLRAERDRTPAVTRDHDGHRVERWTYACACGELYTWDRRPAA
Ga0190269_1001533153300018465SoilMADWLVDISTDPRRFPVVNHRHVNGTLRAERDRTPSVTLDHDGRRVERWSYACACGEIYSWDRRPAA
Ga0190269_1026484323300018465SoilMTDWLVDISTDPRRFPVVSHRHVNGTLRAERDRTPSVTRDHDGRRVERWTYACACGELYAWDRRPTT
Ga0190269_1095358723300018465SoilMADWLVDISTDPRRYPVVHHRHVNGTLRAERDRTPTVTLDHDGRRVERWTYACACGELYAWDRR
Ga0190271_1060819423300018481SoilMTDWLVDMSTDPRRCPVVRHRHANGTLQADRDRTPEVVAHLGQPRVERWTYQCACGEVYVWERSPAA
Ga0190271_1111462633300018481SoilMTDWLVDVSTDPRRFPVVRHRHANGTLQADRDRTPEVVAHLGQPRVERWNYQCACGEVYVWERRPAA
Ga0173481_1022414623300019356SoilVTDWLVDMSTDPRRLPVVRHRHANGTLQADRDRTPEVVAHLGQPRVERWTYLCACGEVYVWERRPAA
Ga0173481_1043431913300019356SoilGGAVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA
Ga0173482_1013357423300019361SoilVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA
Ga0194060_1004354623300021602Anoxic Zone FreshwaterMTDWLVDISTDPRRFPVVHHRHPNGTLRAERDRTPTVTLDHQGRRVERWTYACACGDLYCWDRQPSAA
Ga0224510_1065667923300022309SedimentMADWLVDISTDPRRFPVVRHRHPNGTLRAERDRTPTVTLDHEGRRVERWTYACACGELYDWDRQPAA
Ga0247755_106250323300023070Plant LitterPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA
Ga0247794_1028754213300024055SoilDIEQAFDLQEAAMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAAA
Ga0207649_1118475223300025920Corn RhizosphereVTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTPEVVAHLGQPRVERWTYQCACGEVY
Ga0207687_1045940523300025927Miscanthus RhizosphereMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT
Ga0207690_1167934413300025932Corn RhizosphereMADWLVDVSVDPRRFPVIHHRHANGTLRAERERTPSVTLDHEGRRVERWTYACACGELYD
Ga0207706_1142867113300025933Corn RhizosphereMTQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGE
Ga0207669_1030159113300025937Miscanthus RhizosphereWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT
Ga0207661_1088672723300025944Corn RhizosphereMAQWIVDAPTDPRRFPTVQHRHPNGTLTVERDRTPTVSAPLGGPRVERWTHVFACGEVYIWERKVT
Ga0207677_1029671333300026023Miscanthus RhizosphereMADWLVDMATDPRRFPVVRHRHANGTLQADRERTPSVTLDHDGHRVERWTYACACGELYTWDRKAAA
Ga0207676_1138704123300026095Switchgrass RhizosphereMAQWIVDAPTDPRRFPTVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT
Ga0209261_1012477823300027735Wetland SedimentMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWSYACACGEIFAWDRRPA
Ga0209262_1007896423300027841FreshwaterMADWLVEISTDPRRYPVVHHRHLNGTLRAERDRTPSVTLDHEGRRVERWTYACACGEIYAWDRRPAA
Ga0209798_1004519723300027843Wetland SedimentMADWLVDISTDPQRFPVVHHRHANGTLRAERDRTPSVTLDHEGRRVERWMYACACGELYSWDRRPSAA
Ga0247828_1019514123300028587SoilMTDWLVDVTTDPRRFPVIRHRHANGTLQADRDRTPEVVAHLGQARVERWSYQCACGEVYVWERRPAA
Ga0247828_1056250213300028587SoilMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVM
Ga0247821_1035823023300028596SoilMTDWLVDVSTDPRRFPVIRHRHANGTLQADRDRTPEVVAHLGQARVERWSYQCACGEVYVWER
Ga0247821_1103320513300028596SoilVTDWIVDMSTDPRRFPVVQHRHANGTLRADRDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRGAA
Ga0247821_1123777423300028596SoilMTDWLVDVSTDPRRFPVIRHRHGNGTLQADRDRTPEVVAHLGQARVERWSYQCACGEVYVWE
Ga0247820_1144142923300028597SoilNTRSKSHEDCAMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPAVSAPLGGPRVERWTHVCACGEVYIWERKVT
Ga0302264_102677523300028732FenMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWTYACACGEIFCWDRRAAG
Ga0302261_103715223300028733FenMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWTYACACGEIFCCDRRAAG
Ga0307503_1001543333300028802SoilMAEWVVEVRSGPKQFPTVWHRHPNGTLRAERDRTPTVVQPLGGERVERWTYLCACGEVYLWERPW
Ga0247825_1076644323300028812SoilMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERK
Ga0247827_1011878933300028889SoilMTDWLVDVSTDPRRFPVIRHRHANGTLQADRDRTPEVVAHLGQARVERWSYQCACGEVYVWERRPAA
Ga0311349_1004866623300030294FenMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWTYACACGEIFSWDRRAAG
Ga0247826_1008566623300030336SoilMADWLVDVSTDPLRFPVVHHRHANGTLRAERERTPSVTLDHQGHRVERWTYACACGELYTWDRRPAA
Ga0315556_130292023300031256Salt Marsh SedimentMADWLVDVSTDPRRFPVVHHRHANGTLRAERDRTPSVTLDHAGRRVERWTYACACGELYLWDRQPTP
Ga0315290_1039800423300031834SedimentMADWLMDISTGPGRYPVVHHRHVNGTLRAERNRTPSVTLDRDGHRVERWTYACACGEIYAWDRRPTA
Ga0307416_10242729923300032002RhizosphereVTDWLVDMSTDPRRFPVVRHRHANGTLQADRDRTAEVVAHLGQPQLERWRYQCACGEV
Ga0308173_1109949023300032074SoilMADWLVDVSTEPRRFPVVHHRHANGTLRAERERTPSVTLDHEGRRVERWTYACACGELYTWDRRAAA
Ga0308173_1223779713300032074SoilPVLLFRRLEGGVTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGEPRVERWMYQCACGEVFVWERKPAA
Ga0315271_1001694963300032256SedimentVTDWLVDMTTDPRRFPVVQHRHANGTLHAERDRTPEVVAHLGEARLERWTYHCACGDIFTWERRSAA
Ga0315271_1002650143300032256SedimentVADWLVEVSTDPRRFPVIHHRHVNGTLRAERGRTPLVTSDADGRRVECWTFACACGELTTWERRHGVAG
Ga0315271_1004415823300032256SedimentVADWLVGMASDPRRFPVVDHRHPNGTLRAERDRTPVVALDPDGRRVETWTFACACGEVYAWERRPIGV
Ga0315271_1189733613300032256SedimentMADWIVDISTDPRRYPVVHHRHVNGTLRTERDRTPSVTLDHDGRRVERWTYACACGEIYAWDRRPSA
Ga0316625_10103035923300033418SoilMADWVVDVSTDPRRFPVIHHRHVNGTLRAERDRTPVVTSDADGRRVERWTFACACGETTAWERRSSHSG
Ga0316616_10055278823300033521SoilMADWLVEISTDPRRYPVVHHRHLNGTLRAERDRTPSVTMDHEGRRVERWTYACACGEIYAWDRRPAA
Ga0247829_1053622323300033550SoilMTDWLVDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRPAA
Ga0247830_1063083123300033551SoilDMSTDPRRFPVVQHRHANGTLRAERDRTPEVVAHLGAPRVERWTYQCACGDVFVWERRAA
Ga0247830_1159237223300033551SoilHEDRAMAQWIVDAPTDPRRFPSVQHRHPNGTLSVERDRTPTVSAPLGGPRVERWTHVCACGEVYIWERKVT
Ga0373899_012278_149_3493300034077Sediment SlurryMADWIVAIATDPRRFPVVDHRHPNGTLRAVRERTPQVETDSAGHRLETWAYVCACGEVYAWERRSG
Ga0370490_0004249_2533_27363300034128Untreated Peat SoilMTDWIVDLSTDARRFPVVEHRHANGTLRAERDRTPEVVAHLGEPRMERWTYQCACGDVFVWERRGAA
Ga0370499_0049491_2_1963300034194Untreated Peat SoilMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWSYACACGEIYSWDRRT
Ga0370495_0005630_511_7143300034257Untreated Peat SoilMADWLVDISTDPRRFPVVHHRHVNGTLRAERDRTPSVTLDHDGRRVERWTYACACGEITTWDRRPAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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