NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034077

3300034077: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3



Overview

Basic Information
IMG/M Taxon OID3300034077 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0142001 | Gp0401913 | Ga0373899
Sample NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size188848471
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
Not Available16
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Spirochaetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA0941
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
TypeEngineered
TaxonomyEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003800Metagenome / Metatranscriptome468Y
F009579Metagenome / Metatranscriptome316Y
F012756Metagenome / Metatranscriptome277Y
F013320Metagenome / Metatranscriptome272Y
F015115Metagenome / Metatranscriptome257Y
F019675Metagenome228Y
F020556Metagenome223Y
F021332Metagenome219Y
F023288Metagenome210Y
F026662Metagenome197Y
F029138Metagenome / Metatranscriptome189Y
F030485Metagenome / Metatranscriptome185Y
F034983Metagenome173Y
F038748Metagenome / Metatranscriptome165Y
F041285Metagenome / Metatranscriptome160Y
F044574Metagenome154N
F046458Metagenome / Metatranscriptome151Y
F051241Metagenome / Metatranscriptome144Y
F054639Metagenome139Y
F057478Metagenome136Y
F059117Metagenome134Y
F062853Metagenome130Y
F069797Metagenome123Y
F071206Metagenome / Metatranscriptome122Y
F077749Metagenome117Y
F080210Metagenome / Metatranscriptome115Y
F080211Metagenome / Metatranscriptome115Y
F083633Metagenome112Y
F094440Metagenome / Metatranscriptome106Y
F096021Metagenome105Y
F100549Metagenome / Metatranscriptome102Y
F101098Metagenome / Metatranscriptome102Y
F101455Metagenome / Metatranscriptome102Y
F105124Metagenome / Metatranscriptome100Y
F105444Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373899_001719All Organisms → cellular organisms → Bacteria1629Open in IMG/M
Ga0373899_002547All Organisms → cellular organisms → Bacteria1440Open in IMG/M
Ga0373899_004856Not Available1169Open in IMG/M
Ga0373899_005604All Organisms → cellular organisms → Bacteria → Acidobacteria1114Open in IMG/M
Ga0373899_006193All Organisms → cellular organisms → Bacteria → Terrabacteria group1081Open in IMG/M
Ga0373899_007945All Organisms → cellular organisms → Bacteria → Spirochaetes998Open in IMG/M
Ga0373899_008525All Organisms → cellular organisms → Bacteria974Open in IMG/M
Ga0373899_009020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094955Open in IMG/M
Ga0373899_009296Not Available946Open in IMG/M
Ga0373899_012278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi863Open in IMG/M
Ga0373899_012594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales856Open in IMG/M
Ga0373899_012685Not Available854Open in IMG/M
Ga0373899_012891Not Available850Open in IMG/M
Ga0373899_013648Not Available833Open in IMG/M
Ga0373899_014171Not Available822Open in IMG/M
Ga0373899_016021All Organisms → cellular organisms → Bacteria789Open in IMG/M
Ga0373899_018129Not Available756Open in IMG/M
Ga0373899_018345All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria753Open in IMG/M
Ga0373899_020683Not Available723Open in IMG/M
Ga0373899_023680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium690Open in IMG/M
Ga0373899_025264All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium675Open in IMG/M
Ga0373899_026536Not Available664Open in IMG/M
Ga0373899_027999Not Available652Open in IMG/M
Ga0373899_030672All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium632Open in IMG/M
Ga0373899_030921All Organisms → cellular organisms → Bacteria → PVC group630Open in IMG/M
Ga0373899_036410Not Available594Open in IMG/M
Ga0373899_040069Not Available574Open in IMG/M
Ga0373899_040254Not Available573Open in IMG/M
Ga0373899_043163All Organisms → cellular organisms → Bacteria560Open in IMG/M
Ga0373899_044255Not Available555Open in IMG/M
Ga0373899_045124Not Available551Open in IMG/M
Ga0373899_047253All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium542Open in IMG/M
Ga0373899_052842All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
Ga0373899_057298All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum506Open in IMG/M
Ga0373899_058188Not Available503Open in IMG/M
Ga0373899_058294All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium503Open in IMG/M
Ga0373899_059212All Organisms → cellular organisms → Bacteria500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373899_001719Ga0373899_001719_1404_1628F013320MDTSEAVEVVVKVMTPYIGGTMARSATEAHCQKLGIAGGATVSPEQLDALLGKLGGGLNIFLGRDKSALVVAEAR
Ga0373899_002547Ga0373899_002547_1016_1417F023288MSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRTGGLEPPLSFSVRRGERVLFFFCEEDPERGGWSDVYTVLDQPRGTDGFEPCSALPPAATPSGWSLRGRVPVNDLQFESHERSTYVTRGSLERSLSAAGV
Ga0373899_004856Ga0373899_004856_5_304F101098MVILPQTRGVFLGWLKTYVSVALWPMFFAFAERLALAIPWSAWLGAADGTTDIWGLTVNVLQGETMLAIFNISFFFVFLSIPIASYMIVSGASRPFRTL
Ga0373899_005604Ga0373899_005604_414_851F029138MIRRTLLVALIPAAALAAARHFDIAASFQAPKKPGGQGSVAVTFHPLDPDVRVNESPAPRLKLDLAQTVLVDRQAPPLGQVPDYDPLTARYLDTAKPVLFPVAIAPTAPAGAHSVKASVVYFYCSTREAWCRRGSTEVLVPVAVR
Ga0373899_006193Ga0373899_006193_975_1079F009579MSGVELVLAFLAGVVMGGALDRFVLPLLVDAWIDR
Ga0373899_007945Ga0373899_007945_539_790F080211VFEYRRTPFLGVLFGAAIGFVVTWLLESPERPLTIGQTLLFYVLSCLPGLGLAMLGDPAPRRAKAEYLEIDFYAPKEPGGPAD
Ga0373899_008525Ga0373899_008525_54_179F009579MSGLDLIVAFLAGVVMGGALDRFVLPILVDAWIDRLRRHGR
Ga0373899_009020Ga0373899_009020_211_588F054639MRTAKQTILIAVVLALPYLVTGIFSDGPYAGRLIQGGIFLLVIAGAAAAFMAWRGRRMDEAQDERQDFIVGKATKFSFCVMAVSVQAYWAWQFAAQGNDGDSSFWLLVALWASFGLGYVYNEVRH
Ga0373899_009296Ga0373899_009296_2_238F101455LGQASEAEWRPRLEAALAEADLYLFRGGHYPAGATAARGMLLRALGRGPEGEEALRQAFVLPDKGLAHHIARLALQEP
Ga0373899_012278Ga0373899_012278_149_349F062853MADWIVAIATDPRRFPVVDHRHPNGTLRAVRERTPQVETDSAGHRLETWAYVCACGEVYAWERRSG
Ga0373899_012594Ga0373899_012594_467_595F094440MRPAHDTESSKGLSLAWLAVLIMSAAILTYGTFVVLNLVGLR
Ga0373899_012685Ga0373899_012685_51_527F021332MAKTPAAKTSRTRAKSRTPTLRVQVQHDIDKALERAGIPSAIDSDGWRWMQDPSGKGLIGVVAVTGQREDLSLRVVAPITPLPKAQATLHRSLRRIAEMNYEIPGHARLAIDSRTIWAVVAHNVGDIGPDDVPNCIFDCVWLSQAAAEWLKGPKPKKK
Ga0373899_012891Ga0373899_012891_74_370F044574MRPAVRIIFAPIMSRTKGDRDRGLFVHGTTQNRTITIDPRSSEIGKTLLHEMIHLRHPDWSEEAVVSETRLRWGKMSWKEKARFLRLLGSAHLEGEEP
Ga0373899_013648Ga0373899_013648_1_564F034983VERQAWLARVVERGSLDAGGAREELRRALQGKTGATSAVAEAATRRPEVPRAAVLLPAERWLLALVAQGAAGVEIALDELQESDLEGLRSAPLLRVAQAVARKNERVTLPAVLDALDEDARRVMSQIAVEGVPTEGLSAEECVRELRRQPLKARMAEIQKRLAGASEDAQEALLAEKTRLVRQMAGL
Ga0373899_014171Ga0373899_014171_504_800F038748MGKRLAITCGFLLGVLLFTSVPALAQDPFAGLTRTLNSSARTWAAALMLIGALIAGGAIMMGSRESGHHTRNFLFGAVFLVLAGAGLAIYDRISGMLN
Ga0373899_016021Ga0373899_016021_16_174F105124VDGAVNLTAFLLDNLSYAFRAVQGGLVQGYALSMLIGLFLLIAAGRFLLGLY
Ga0373899_018129Ga0373899_018129_3_704F020556DRGVRRVEIGPPDPGFGFGRFTRVELRGRSFVVLTEAVTEPRFTVTTVVTERGVPLRKVESAFPHPLAREDDRDTIRRQLDLQHDDTLQRLDELLLDPSPRRVVWSDQSRSVEAGVLAWAISVVAQLAETQAGTDETARQLRLTHEKALVEDDALRAFQITPFGRVVVDPQHAGRVARRAVRAVAGWCRAFAVAALQADADAIGEPVRQATRRYALELERMGFYDRLLRRAKA
Ga0373899_018345Ga0373899_018345_615_752F071206RKFRALGFAKVRVSGSGATRKVEGVWPGKDASAPLPRQIVAVARM
Ga0373899_020683Ga0373899_020683_432_722F012756KIEELTPKPKERAMSPRQLAALQREEEIRKALARLKTDEDILAIELDPAEKLPTMRSAVKRAVAAHRPGTNMAVRGRTIYLSTGRLPGGRGRPPKA
Ga0373899_023680Ga0373899_023680_232_393F019675MLRTRQIITVVMGILGALLIVRGVWGGVWPVSIQLIAGVLLLGYAILRWRYKL
Ga0373899_025264Ga0373899_025264_414_674F015115MRAKLAGVCLFAAALALATWAPAQEATPTTITDIRQESTDRSTRLIVECTGPLAYTYYSPDPLTLVVDIPEVDASQVPARVNVGTRE
Ga0373899_026536Ga0373899_026536_2_580F059117AGLALSLVTTIRVWNRPREVVRIGCDGIPQVVRLDNVAYSEPDEREIRAFATEFAVFYARSDSYSILNDFVWCANRMAPELREHFKRSVRGTPETPGLIAVIEKLRRRTQIDPGTLDIKVDKGPYPWKVQVKGFRQIVGDSGPGESFELELDLVRASRDERLEGLLIWGIRAKGDPIDTVLASVAAEGGRLP
Ga0373899_027123Ga0373899_027123_1_453F083633MRFVVPRWALVSVLALFAVACGREFEGGGDLRAQKVVLKREVDGIREIVTRLERGEPVLPLDDVAISIDETFVRDLVAAQLPFEMDVDRFHLSLTEAEAQFRGSPVVRLRGALRLRKRPDLEAAVTVIGALEDIQVEQSSSTLKARIAVDH
Ga0373899_027999Ga0373899_027999_211_438F003800MGDDRRDDADQRRADVYSSARIGAAAALTLVLVVLLVLDVAVPDYDISPGILLPLLGAILALLGLEASAVWRGVR
Ga0373899_030672Ga0373899_030672_477_632F057478MVVLRSIIFTVLMIFVTAGFAIAVLVSALLPLTIEQRYVIPRNWGLSLTWLA
Ga0373899_030921Ga0373899_030921_348_629F105444GHAVDGAAIEGEAVVLFATGDLTDAEATLPNVQTRSLLLAGLEPRVSYEIQVTSAFAPGAPAWRATAEAGDESTILLPWDGVRDGRLRLRRLR
Ga0373899_036410Ga0373899_036410_2_496F030485MAAHARRLIAMLLLPLLAFACGGTDTEPAATATPAAPDHLVGLHASDLLKGFRERGLACKEPVREREFSHYVCESSTPLVQYRGEFYAKVPGRVEYIRVLVAQTGDAKLEVAAPLLAFVANQPYDGADPDAARAWVERAVAAPGQTEIGIAKLKVAGDLTRLVFE
Ga0373899_040069Ga0373899_040069_12_416F100549MRNPPVLVSVLGFFAALAGFAWLFLGLRILGFDWFGVFGDLPAFESAGLWGWLAIGGGILWLLTAFGLWAMQPWAWMVAMIVADISLFEAFLWAFSYPGSGIGLSMGLLPLVIIWYLNSRDIKSQFGMTEPPQS
Ga0373899_040254Ga0373899_040254_1_534F080210MLLATPEARAQAVELTAFGGLAFGGELIATPGLEAVTLQAGPLYGGAFNVEFLPRWRFEGSVSREESKVRGPASGTYVDVNVDRYMVGVQSQERLSGSFDIFGVFMLGATRYAPAGYESELWFTLGAAAGVKTYVTRNVGFRFEARGYYTPVVISGVGTCGGYGCVIGYTGTGTFSGD
Ga0373899_043163Ga0373899_043163_26_313F077749MNADDAMERLLRDAMGAEIPQLSPAFDGRVMRRVRPRRLTTTGRVVMAVYSVVAAAALVWLVHDLPMNLTLAAVAIGVPVAAGAHAYVRRFAAGG
Ga0373899_044255Ga0373899_044255_36_554F046458MRSGFERVVRVAVAGALLSALAGCGDDSPRPPMVVITPEPVRGVIARTSVSGFQTDVWISIELLLSQRGVLDITVDWTFPETWMYVDFGRTNCDYEQLASRNCPFILSSETKDPKPRVLYTEELDPGTYYLVLYNVPRDPRTGIGSDNTEAVSIQLGLTVKASGERSTDAIHL
Ga0373899_045124Ga0373899_045124_85_549F030485CGGSKDAASSAPAAAAAPDHLAGLHASDLLKGFRERGLVCKDPVLDREFRHYVCESSTPLVQYRAEFYAKVPGRVEYIRVLVAQTGDAKLEVAGPLLAFVANQRYEGADPDAARAWVEKAVAAPGQTEIGIAKLKVSGDLTRLVFELKAAGSEW
Ga0373899_047253Ga0373899_047253_46_252F051241MLLEEAEKRGKTPPPAPLVHGLETEPSQADRMERLDEQVVWADRNQLLHRIQMFFDAMPSSGWVEIDK
Ga0373899_051389Ga0373899_051389_27_404F069797MDDAGDAPESAPPPSWDDVTDACLGLAQARGALLADPSGQVFAARGEWPEPGPTAIATKLVSMMNRTLKDAPTRSISAPLMGMHLTAWRVPLDQGLVTAAFIADQPVRTEARPAIDTEIHRAASA
Ga0373899_052842Ga0373899_052842_292_498F096021MIDMVHEIFGVTADQASESEKIVRTMEQVRDIAESNRRSAGEMNETVSLLADAIRELDEEVRKFRIRT
Ga0373899_057298Ga0373899_057298_236_487F041285MTSSLQLVSEQFPSLRERVACLFEREETFRELCEDYEACTLALGRQESNEGLKREYSALRLRLETELLGYLRQDAHSPVHRHQ
Ga0373899_058188Ga0373899_058188_36_263F080211VFDYRRTPSLGLLFGAAIGFAVTWLVETPDRPLTLAQAVIFYALSCLPGLGIAMLCDPAPQRAKEEYLRVDFYAP
Ga0373899_058294Ga0373899_058294_1_186F026662GLINPRVYHSADSKKSEIVVVFDTEDTKKAKEFAASADLKEAMEKSGVLDTPTIYFLESI
Ga0373899_059212Ga0373899_059212_263_499F077749MHDDDVMDRLLRAAMAADAPQLSPAFDARVMQRVRPRRLTPTGRVVMALYAVVAAAAAVWLMGDLPMGSIVAAATIGVP
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