Metagenome / Metatranscriptome Family F072368

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072368
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	58 residues
Representative Sequence	MNLYRIFGCAIIGLIVLMEPAFAIQAVPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Number of Associated Samples	57
Number of Associated Scaffolds	79

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.34 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	74.38 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.157 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (17.355 % of family members)
Environment Ontology (ENVO)	Unclassified (53.719 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.025 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.24% β-sheet: 0.00% Coil/Unstructured: 51.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 79 Family Scaffolds
PF04116	FA_hydroxylase	17.72
PF05402	PqqD	1.27
PF00196	GerE	1.27
PF13432	TPR_16	1.27
PF05128	DUF697	1.27
PF00069	Pkinase	1.27

COG ID	Name	Functional Category	% Frequency in 79 Family Scaffolds
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	17.72
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	5.06
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	1.27

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
All Organisms	root	All Organisms	38.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
cellular organisms	root	All Organisms → cellular organisms	38.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.18 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	8.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.79 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	8.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.79 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.16 %
Microvirga arabica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	8.26 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	4.13 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.48 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10274175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	534	Open in IMG/M
3300000567\|JGI12270J11330_10274175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	534	Open in IMG/M
3300001452\|JGI20203J14952_1041186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	501	Open in IMG/M
3300001546\|JGI12659J15293_10145074	Not Available	518	Open in IMG/M
3300002245\|JGIcombinedJ26739_101153760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300004080\|Ga0062385_10079241	Not Available	1526	Open in IMG/M
3300004082\|Ga0062384_100026613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2548	Open in IMG/M
3300004082\|Ga0062384_100026613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2548	Open in IMG/M
3300004082\|Ga0062384_101182191	Not Available	555	Open in IMG/M
3300004092\|Ga0062389_100018823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4802	Open in IMG/M
3300005995\|Ga0066790_10494531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	523	Open in IMG/M
3300006426\|Ga0075037_1056904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	731	Open in IMG/M
3300009521\|Ga0116222_1481816	Not Available	542	Open in IMG/M
3300009522\|Ga0116218_1477784	Not Available	556	Open in IMG/M
3300009522\|Ga0116218_1477784	Not Available	556	Open in IMG/M
3300009523\|Ga0116221_1316571	Not Available	676	Open in IMG/M
3300009524\|Ga0116225_1430409	Not Available	586	Open in IMG/M
3300009641\|Ga0116120_1287615	Not Available	511	Open in IMG/M
3300009641\|Ga0116120_1287615	Not Available	511	Open in IMG/M
3300009651\|Ga0105859_1266794	Not Available	526	Open in IMG/M
3300009672\|Ga0116215_1195470	Not Available	892	Open in IMG/M
3300009824\|Ga0116219_10368492	Not Available	804	Open in IMG/M
3300009839\|Ga0116223_10013894	All Organisms → cellular organisms → Bacteria	5926	Open in IMG/M
3300010379\|Ga0136449_102111218	Not Available	826	Open in IMG/M
3300010379\|Ga0136449_102111218	Not Available	826	Open in IMG/M
3300010379\|Ga0136449_102111218	Not Available	826	Open in IMG/M
3300013832\|Ga0120132_1029386	Not Available	1003	Open in IMG/M
3300014156\|Ga0181518_10262167	Not Available	873	Open in IMG/M
3300014159\|Ga0181530_10375884	Not Available	728	Open in IMG/M
3300014162\|Ga0181538_10724972	Not Available	514	Open in IMG/M
3300014162\|Ga0181538_10724972	Not Available	514	Open in IMG/M
3300014165\|Ga0181523_10357379	Not Available	818	Open in IMG/M
3300014199\|Ga0181535_10228456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	1131	Open in IMG/M
3300014199\|Ga0181535_10362527	Not Available	854	Open in IMG/M
3300014200\|Ga0181526_10325897	Not Available	978	Open in IMG/M
3300014489\|Ga0182018_10010591	All Organisms → cellular organisms → Bacteria	6627	Open in IMG/M
3300014489\|Ga0182018_10010591	All Organisms → cellular organisms → Bacteria	6627	Open in IMG/M
3300014489\|Ga0182018_10010591	All Organisms → cellular organisms → Bacteria	6627	Open in IMG/M
3300014489\|Ga0182018_10467563	Not Available	669	Open in IMG/M
3300014495\|Ga0182015_10134323	Not Available	1692	Open in IMG/M
3300014495\|Ga0182015_10134323	Not Available	1692	Open in IMG/M
3300014495\|Ga0182015_10134323	Not Available	1692	Open in IMG/M
3300014495\|Ga0182015_10529424	Not Available	751	Open in IMG/M
3300014495\|Ga0182015_10940989	Not Available	539	Open in IMG/M
3300014501\|Ga0182024_10190161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2823	Open in IMG/M
3300014501\|Ga0182024_12181966	Not Available	607	Open in IMG/M
3300014501\|Ga0182024_12181966	Not Available	607	Open in IMG/M
3300014657\|Ga0181522_10037871	All Organisms → cellular organisms → Bacteria	2687	Open in IMG/M
3300014657\|Ga0181522_10573679	Not Available	683	Open in IMG/M
3300014657\|Ga0181522_10735223	Not Available	603	Open in IMG/M
3300014657\|Ga0181522_10735223	Not Available	603	Open in IMG/M
3300014657\|Ga0181522_10735223	Not Available	603	Open in IMG/M
3300014657\|Ga0181522_11028865	Not Available	511	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10022773	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300017946\|Ga0187879_10150113	Not Available	1319	Open in IMG/M
3300017946\|Ga0187879_10446155	Not Available	717	Open in IMG/M
3300017946\|Ga0187879_10715530	Not Available	558	Open in IMG/M
3300017988\|Ga0181520_10457224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	913	Open in IMG/M
3300017988\|Ga0181520_10457224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	913	Open in IMG/M
3300018013\|Ga0187873_1241401	Not Available	669	Open in IMG/M
3300018013\|Ga0187873_1241401	Not Available	669	Open in IMG/M
3300018033\|Ga0187867_10167338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	1259	Open in IMG/M
3300018033\|Ga0187867_10167338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	1259	Open in IMG/M
3300018033\|Ga0187867_10209543	Not Available	1106	Open in IMG/M
3300018033\|Ga0187867_10289176	Not Available	918	Open in IMG/M
3300018033\|Ga0187867_10623024	Not Available	590	Open in IMG/M
3300018033\|Ga0187867_10623024	Not Available	590	Open in IMG/M
3300018037\|Ga0187883_10158678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	1163	Open in IMG/M
3300018047\|Ga0187859_10317290	Not Available	845	Open in IMG/M
3300018057\|Ga0187858_10415457	Not Available	834	Open in IMG/M
3300018086\|Ga0187769_10394077	Not Available	1041	Open in IMG/M
3300023250\|Ga0224544_1021935	Not Available	885	Open in IMG/M
3300023250\|Ga0224544_1021935	Not Available	885	Open in IMG/M
3300023259\|Ga0224551_1088826	Not Available	545	Open in IMG/M
3300023259\|Ga0224551_1088826	Not Available	545	Open in IMG/M
3300025627\|Ga0208220_1016215	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300025627\|Ga0208220_1016215	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300025627\|Ga0208220_1016215	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300025627\|Ga0208220_1016215	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300026959\|Ga0207852_1031055	Not Available	546	Open in IMG/M
3300027039\|Ga0207855_1057477	Not Available	525	Open in IMG/M
3300027039\|Ga0207855_1057477	Not Available	525	Open in IMG/M
3300027680\|Ga0207826_1030412	Not Available	1498	Open in IMG/M
3300027737\|Ga0209038_10275933	Not Available	502	Open in IMG/M
3300027829\|Ga0209773_10490269	Not Available	506	Open in IMG/M
3300027854\|Ga0209517_10280686	Not Available	982	Open in IMG/M
3300027854\|Ga0209517_10280686	Not Available	982	Open in IMG/M
3300027854\|Ga0209517_10280686	Not Available	982	Open in IMG/M
3300027895\|Ga0209624_10007137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7344	Open in IMG/M
3300027895\|Ga0209624_10007137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7344	Open in IMG/M
3300027895\|Ga0209624_10102914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1866	Open in IMG/M
3300027895\|Ga0209624_10102914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1866	Open in IMG/M
3300027895\|Ga0209624_10102914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1866	Open in IMG/M
3300027895\|Ga0209624_10118467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1737	Open in IMG/M
3300027895\|Ga0209624_11020242	Not Available	535	Open in IMG/M
3300029999\|Ga0311339_11375334	Not Available	636	Open in IMG/M
3300029999\|Ga0311339_11375334	Not Available	636	Open in IMG/M
3300030659\|Ga0316363_10039081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	2348	Open in IMG/M
3300030659\|Ga0316363_10039081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	2348	Open in IMG/M
3300030659\|Ga0316363_10039081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	2348	Open in IMG/M
3300030659\|Ga0316363_10039081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	2348	Open in IMG/M
3300031090\|Ga0265760_10281005	Not Available	585	Open in IMG/M
3300031090\|Ga0265760_10281005	Not Available	585	Open in IMG/M
3300031234\|Ga0302325_10147885	All Organisms → cellular organisms → Bacteria → Proteobacteria	4213	Open in IMG/M
3300031234\|Ga0302325_10147885	All Organisms → cellular organisms → Bacteria → Proteobacteria	4213	Open in IMG/M
3300031234\|Ga0302325_10147885	All Organisms → cellular organisms → Bacteria → Proteobacteria	4213	Open in IMG/M
3300031234\|Ga0302325_10947956	Not Available	1186	Open in IMG/M
3300031234\|Ga0302325_13003869	Not Available	545	Open in IMG/M
3300031236\|Ga0302324_103236531	Not Available	535	Open in IMG/M
3300031236\|Ga0302324_103236531	Not Available	535	Open in IMG/M
3300031525\|Ga0302326_10408045	Not Available	2103	Open in IMG/M
3300031525\|Ga0302326_11394130	Not Available	947	Open in IMG/M
3300031708\|Ga0310686_114109678	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300031708\|Ga0310686_114505251	Not Available	532	Open in IMG/M
3300032160\|Ga0311301_10017579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20829	Open in IMG/M
3300032892\|Ga0335081_10000026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	265185	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.81%
Aquatic	Environmental → Aquatic	37.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.41%
Freshwater	Environmental → Aquatic → Freshwater	37.19%
Peat	Environmental → Terrestrial → Peat	12.40%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.05%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.40%
Loam	Environmental → Terrestrial → Soil → Loam	10.74%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	35.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	17.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	16.53%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	13.22%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.09%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	7.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.44%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.31%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.65%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001452	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006426	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102741752	3300000567	Peatlands Soil	MNLCGIFGWAIIGLIALMEPAFAIEAVPGPIAGIGLPALAVIGGAYWLGRKVTARKK*
JGI12270J11330_102741753	3300000567	Peatlands Soil	SGWAIIGLIALMEPAFALNATPGPIAGIGLPALVLIGGVYWVGRKLLVRKK*
JGI20203J14952_10411861	3300001452	Arctic Peat Soil	VPNCGAERRTSIMSVIQIFCLTTIGLAVLAEPAFAGTSPAPGPIAGIGLPALALIGGTYWVSRKLFARKK*
JGI12659J15293_101450742	3300001546	Forest Soil	MYAYRILGFAAVGFAVLMGPALAGINATPGPIAGIGLPALAVIGGAYWIGRKVSARKK*
JGIcombinedJ26739_1011537603	3300002245	Forest Soil	MNSYRLVGCAIIGLIALMEPAFALQATPGPVAGIGLPALAIIGGAYWLGRKLLARKK*
Ga0062385_100792412	3300004080	Bog Forest Soil	MRNMYRVLGLAAVALIVVVEPALATPAPGPIAGVGLPALALIGGAYWVGRKFFARKK*
Ga0062384_1000266133	3300004082	Bog Forest Soil	MNLYRVLAGAGIGLIALMGPAFAVAEAPGPIAGIGLPALALIGGAYWVGRRLFARKK*
Ga0062384_1000266135	3300004082	Bog Forest Soil	VRSIYRVLGLAAIGLTVLLNPAFASGVGAPGPIAGVGLPALAVIGGAYWVGRKLLARKK*
Ga0062384_1011821911	3300004082	Bog Forest Soil	MSVYRIFGLATIGLTVLMSPAFAGPSSTAPGPIAGIGLSALALIGGTYWVGRKFFARKK*
Ga0062389_1000188235	3300004092	Bog Forest Soil	MYRVVGLAAIGLTVSLNSAFAGTVGAPGPIAGVGLPALALIGGAYWVGRKLFARKK*
Ga0066790_104945311	3300005995	Soil	VTIYRIFGLAIIGLTVSMDSAFAVQAAPGPIAGIGLPALALIGGAYWVGRKLFVRKK*
Ga0075037_10569042	3300006426	Permafrost Soil	MTLYRIFGLAIIGLTVSMDSAFAVAAAPGPVAGIGLPALALIGGAYWVGRKLFVRKK*
Ga0116222_14818162	3300009521	Peatlands Soil	MNLYRICGLTIIGLIAVTEPAFAEVAAPGPIAGIGLPALALIGGAYWVGRKLFPRK*
Ga0116218_14777841	3300009522	Peatlands Soil	MNLCGIFGWAIIGLIALMEPAFAIEAVPGPIAGIGLPALVVIGGAYWIGRKVTAR
Ga0116218_14777842	3300009522	Peatlands Soil	MNLYRISGWAIIGLIALMEPAFALNATPGPIAGIGLPALVLIGGVYWVGRKLLVRKK*
Ga0116221_13165713	3300009523	Peatlands Soil	MNLYRIIGWFIIGLTVSVDSAFATPAVPGPIAGIGLPALAVIGGAYWLGRKLLVRKK*
Ga0116225_14304091	3300009524	Peatlands Soil	NIMNLYRIIGWFIIGLTVSVDSAFATPAVPGPIAGIGLPALAVIGGAYWLGRKLLVRKK*
Ga0116120_12876151	3300009641	Peatland	MGGDIMGVYRICGLTIIGLTALTEPAVAGTVAVPGPIAGIGLPALAVIGGAY
Ga0116120_12876152	3300009641	Peatland	MNLYRIFGWATIGLTVFVDPALAGPTSAAPGPIAGIGLPALAVIGGAYWLGRKLLARKK*
Ga0105859_12667941	3300009651	Permafrost Soil	VTIYRIFGLAIIGLTVSMDSAFAVQAAPGPVAGIGLPALALIGGAYWIGRKLTRKK*
Ga0116215_11954703	3300009672	Peatlands Soil	MWGGIVSQYGLFGLATIGLAVLVDPAFAGTPAVPGPITGIGLPALVLIGGVYWVGRKLLVRKK*
Ga0116219_103684924	3300009824	Peatlands Soil	MNLYRIIGWSIIGLTVSVDSAFAQPAVPGPIAGIGLPALALIGGAFGGAYWIGRKVTARKNKK*
Ga0116223_100138947	3300009839	Peatlands Soil	MWGGIVSQYGLFGLATIGLAVLVDPAFAGTPAVPGPITGIGLPALAVIGGAYWLGRKLLDRKK*
Ga0136449_1021112182	3300010379	Peatlands Soil	MNIYRPFGLAVIGLTVLVGPAFANITEAPGPIAGIGLPALALIGGAYWVGRKVTARKNKK
Ga0136449_1021112183	3300010379	Peatlands Soil	MSIYRGFGLAIIGLTVLVEPAFAGFAAPGPIAGIGLPALALIGGAYWIGRKLTARKNRK*
Ga0136449_1021112184	3300010379	Peatlands Soil	MKGSDILNLYRIFVCAIIGLIALMEPAFAITTAPGPIAGIGLPALGLIGGAYWIGRKLTARKK*
Ga0120132_10293863	3300013832	Permafrost	MIFVRATCLAAIGLGVLVAPAFAGEVPAPGPIAGVGMPALALVGSAYWLGRKLFAGKK*
Ga0181518_102621672	3300014156	Bog	MNVYRICGLSIVGLIVLMEPAFAQLAAPGPIAGIGLPALALAGGAYWIGRKLFTRK*
Ga0181530_103758842	3300014159	Bog	MRKFWPSVLAIISVTALVDPAFAGVTAVPGPIAGIGLPALAVIAGAYWIGRKLSARKNKN
Ga0181538_107249721	3300014162	Bog	VMNVYRICGLSIIGLTVLIEPAFAGGVAAVPGPVAGIGLPALAVVGGAYWVGRKLLNRKK
Ga0181538_107249722	3300014162	Bog	MNVYRSCGLTIIGLTVLMEPAFAAPAAPGPIAGIGLPALALVGGAYWIGRKLLARNK*
Ga0181523_103573792	3300014165	Bog	MNVYRIGGLTIIGLVALAEPALAVEAVPGPIAGIGLPALAVIGGAYWIGRKLLNRNK*
Ga0181535_102284562	3300014199	Bog	MNLYRVFGCAIVGFIALMEPAVAGPSAAPGPIAGIGLSALALIGGTYWVGRKLFARKK*
Ga0181535_103625271	3300014199	Bog	MYRALGLATIGLTVLLNPAYAGFNAAPGPIAGIGLPALALVGGAYWVGRKLFARKK*
Ga0181526_103258972	3300014200	Bog	NVRNMYRVLGLATIGLTVLLNPAYAGFNAAPGPIAGIGLPALALVGGAYWVGRKLFARKK
Ga0182018_100105916	3300014489	Palsa	MNLYRIFGCAIIGLIVLMEPAFAIQAVPGPIAGIGLPALALIGGAYWIGRKLFAHKK*
Ga0182018_100105917	3300014489	Palsa	MSAYRIFGFATVGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK*
Ga0182018_100105918	3300014489	Palsa	MSAYRIFGLATVGLTVLTSPAFAGPSTAAPGLIAGIGLPALALIGGTYWVGRKFFARKK*
Ga0182018_104675632	3300014489	Palsa	MNLHRIVGLATLGLAVLADSAFAGTGTAPGPIAGIGLPAVALIGGAYWLGRKLLARKK*
Ga0182015_101343232	3300014495	Palsa	VEASIMSQYRLFGSATIGLAVLVDPAFAGTAAVPGPIAGIGLPALALIGGAYWIGHKLLARKK*
Ga0182015_101343233	3300014495	Palsa	MYRIFGLATLGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK*
Ga0182015_101343234	3300014495	Palsa	MSAYRIFGLATLGLTVLTSPAFAGPSSAAPGLIAGIGLPALALIGGTYWVGRKFFARKK*
Ga0182015_105294242	3300014495	Palsa	MNLHRIVGLATLGLAVLADPAFAGTGTAPGPIAGIGLPAVALIGGAYWLGRKLLARKK*
Ga0182015_109409892	3300014495	Palsa	MRGENIMNVYRICGWAIIGLIALMEPAFAGPSVPGPIAGIGLPALALIGGAYWVGRK
Ga0182024_101901615	3300014501	Permafrost	MNLYRVFGCAIIGFIALMEPAFAQVAAPGPIAGIGLPALALIGGAYWVGRKLFVRKK*
Ga0182024_121819662	3300014501	Permafrost	MNVYRICGLTIIGLIALMEPAFAAEAVPGPIAGIGLPALALIGGAYWVGRRLLARKK*
Ga0182024_121819663	3300014501	Permafrost	MNVYRICGWAIIGLIALMEPAFAGPSVPGPIAGIGLPALALIGGAYWVGRKLFDRKK*
Ga0181522_100378713	3300014657	Bog	MYRVLGLATIGLTVLLNPAYAGINAAPGPIAGIGLPALALVGGAYWVGRKLFARKK*
Ga0181522_105736792	3300014657	Bog	MMSAYRVFGLATVGLIVLTGSAFAGPGAAPGPIAGIGLSALALIGGAYWVGRKLFAPKK*
Ga0181522_107352231	3300014657	Bog	HGSDVMNPYLLFGCAVIGLIALVEPALAEEAVPGPIAGSGLPALALIGGAYWVGRKLFVGKK*
Ga0181522_107352232	3300014657	Bog	MNPYLLFGCAIIGLIALMEPAFAVEAVPGPVAGIGLPAFALIGGAYWLGRKLFVDKK*
Ga0181522_107352233	3300014657	Bog	MNELVRILGLAGIGLTVLVIPAFAGVTATPGPIAGIGLPALALIGGAYWIGRKVTA
Ga0181522_110288651	3300014657	Bog	ANIMSVFRSFGLATVGLTVLMGPAFAEAPAPGPIAGIGVSALALIGGTYWVGRKLLARKK
Ga0187879_100227732	3300017946	Peatland	VNLYWIVGLTIIGLAVLVDPAFAGISATPGPIAGIGLPALAVIGGAYWVGRKLLARKK
Ga0187879_100227733	3300017946	Peatland	MSVCRICGLSIIGLVALMEPAFAFEAVPGPIAGIGLPTLAIIGGAYWIGRKVSARKNEK
Ga0187879_100227734	3300017946	Peatland	VNVYRICGLTIIGLMALMEFAFAVEPVPGPIAGVGLPALAVIGGAYWVGRKLLARKK
Ga0187879_100227735	3300017946	Peatland	MNLYRIFGWATIGLTVFVDPALAGPTSAAPGPIAGIGLPALAVIGGAYWLGRKLLARKK
Ga0187879_100227736	3300017946	Peatland	MGVYRICGLTIIGLTALTEPAVAGTVAVPGPIAGIGLPALAVIGGAYWIGRRVSRRNNKK
Ga0187879_100227737	3300017946	Peatland	MNVYRICGLTMIGLIALMEPAFAQVAVPGPIAGIGLPALAVIGGAYWVGRKLFSRK
Ga0187879_101501132	3300017946	Peatland	MSAYRIFGLATLGLTVLTSPAFAGPSSAAPGLIAGIGLPALALIGGTYWVGRKFFARKK
Ga0187879_104461552	3300017946	Peatland	MRKFWPSVLAIISVTALVDPAFAGVTAVPGPIAGIGLPALAVIAGSYWIGR
Ga0187879_107155301	3300017946	Peatland	MSQYRLFGSATIGLAVLVDPAFAGTAAVPGPIAGIGLPALALIGGAYWIG
Ga0181520_104572241	3300017988	Bog	VRNMYRVLGLATIGLTVLLNPAYAGFNAAPGPIAGIGLPALALVGGAYW
Ga0181520_104572242	3300017988	Bog	MNLYRVFGCAIVGFIALMEPAVAGPSAAPGPIAGIGLSALALIGGTYWVGRKLFARKK
Ga0187873_12414011	3300018013	Peatland	AIISVTVLVDPAFAGISPTPGPIAGIGLPALTVIGGAYWIGRKVSARKNEK
Ga0187873_12414012	3300018013	Peatland	VNVYRICGLTIIGLMALMESAFAVEPVPGPIAGVGLPALAVIGGAYWVGRKLLARKK
Ga0187867_101673382	3300018033	Peatland	MSQYRLFGSATIGLAVLVDPAFAGTAAVPGPIAGIGLPALALIGGAYWIGHKLLARKK
Ga0187867_101673383	3300018033	Peatland	MSMYRTFGLATLGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0187867_102095434	3300018033	Peatland	VNVYRICGLTIIGLMALMESAFAVEPVPGPIAGVGLPALAVIGGAYWVGRKL
Ga0187867_102891762	3300018033	Peatland	AYRIFGLATLGLTVLTSPAFAGPSSAAPGLIAGIGLPALALIGGTYWVGRKFFARKK
Ga0187867_106230241	3300018033	Peatland	IGLTVLIEPAFAGGVAAVPGPVAGIGLPALAVIGGAYWIGRKLLNRNK
Ga0187867_106230242	3300018033	Peatland	MNVYRICGLSIVGLIVLMEPAFAQLAAPGPIAGIGLPALALAGGAYWIGRKLFTRK
Ga0187883_101586783	3300018037	Peatland	MSMYRIFGLATLGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0187859_103172901	3300018047	Peatland	MKVYRICGLTMIGLIALMEPAFAQVAVPGPIAGIGLPALAVIGGAYWVGRKLFSRK
Ga0187858_104154573	3300018057	Peatland	MSQYRLFGSATIGLAVLVDPAFAGISATPGPIAGIGLPALAVIGGAYWVGRKLLARKK
Ga0187769_103940771	3300018086	Tropical Peatland	MRAVFQLLGLAVISFIALAEPAFATAGPGPIAGVGLPALAIVGGVYWVGRKLFARKK
Ga0224544_10219351	3300023250	Soil	MNLYRIFGCAIIGLIVLMEPAFALQAVPGPIAVIGLPALALIGGAYWIGRKLFAHKK
Ga0224544_10219352	3300023250	Soil	MSAYRIFGLATVGLTVLTSPAFAGPSTAAPGLIAGIGLPALALIGGTYWVGRKFFARKK
Ga0224551_10888261	3300023259	Soil	SMRGENIMNVYRICGWAIIGLISLMEPAFAGPSVPGPIAGIGLPALALIGGAYWVWRKLFDRKK
Ga0224551_10888262	3300023259	Soil	MNIYRVFGVAIIGLSVLMEPAFAGFGPVPGPIAGIGLPALALIGGAYWVGRKLLARKK
Ga0208220_10162152	3300025627	Arctic Peat Soil	MSVIQIFCLTTIGLAVLAEPAFAGTSPAPGPIAGIGLPALALIGGTYWVSRKLFARKK
Ga0208220_10162153	3300025627	Arctic Peat Soil	MKSIIRIIGLSAIGFAVLAEPAFAGAPAPGPIAGIGLPALALVGGAYWVGRKLFARRK
Ga0208220_10162154	3300025627	Arctic Peat Soil	MYLYRIVGLAALGLAILMDSAFAGPAAAPGPIAGIGLPALALVGGAYWVGRKLFARKK
Ga0208220_10162155	3300025627	Arctic Peat Soil	MNLYRVACLAAMGLTTLIEPAFATPAAPGPIAGIGLPALALVGGAYWVGRKLFVRKK
Ga0207852_10310551	3300026959	Tropical Forest Soil	MPLYRICSLAVISLIALMDSAFAEKLPAPGPIAGIGLPALALIFGAYWAGRKLLARKK
Ga0207855_10574771	3300027039	Tropical Forest Soil	MRLYRICSLAVISLIALMDSAFAEKLPAPGPIAGIGLPALALIFGAYWAGRKLLARKK
Ga0207855_10574772	3300027039	Tropical Forest Soil	MNLYRIFGLATIVLSGLVDYAFAGPTTAAPGPIAGIGLPALALIGGAYWVGRKLLTRK
Ga0207826_10304121	3300027680	Tropical Forest Soil	NIMRLYRICSLAVISLIALMDSAFAAGAPAPGPIAGIGLPALALIGGAYWVGRKLFTRKK
Ga0209038_102759332	3300027737	Bog Forest Soil	MYRVVGLAAIGLTVSLNSAFAGTVGAPGPIAGVGLPALALIGGAYWVGRKLFARKK
Ga0209773_104902692	3300027829	Bog Forest Soil	VRNIYRILGFAAVALTVTLNPAFAALSAPGPVAGIGLPALALIGGAYWVARKLLAR
Ga0209517_102806861	3300027854	Peatlands Soil	VSQYGLFGLATIGLAVLVDPAFAGTPAVPGPITGIGLPALAVIGGAYWLGRKLLDRKK
Ga0209517_102806863	3300027854	Peatlands Soil	MNLCGIFGWAIIGLIALMEPAFAIEAVPGPIAGIGLPALAVIGGAYWLGRKVTARKK
Ga0209517_102806864	3300027854	Peatlands Soil	VNKYRAFGLATIGLTVLVEPAFAGITSVPGPIAGIGLPALVVIGGAYWIGRKVTARKNKK
Ga0209624_100071378	3300027895	Forest Soil	MNLYRICASTIVGLIALMEPAFAGPTAVPGPIAGIGLPALALIGGAYWVGRKLSTRK
Ga0209624_100071379	3300027895	Forest Soil	MKSYRLFGYAIIGFIALVEPAFALQAVPGPVAGIGLPALALIGGAYWIGRKVTARKK
Ga0209624_101029142	3300027895	Forest Soil	MYAYRILGFAAVGFAVLMGPALAGINATPGPIAGIGLPALAVIGGAYWIGRKVSARKK
Ga0209624_101029143	3300027895	Forest Soil	MNSYRLVGCAIIGLIALMEPAFALQATPGPVAGIGLPALAIIGGAYWLGRKLLARKK
Ga0209624_101029144	3300027895	Forest Soil	LSGGCVNVGARIMSYCRLFGLASIGLAELVDTAFAGTAAVPGPVAGIGLPALAVIGGAYWLGRKLLVRKK
Ga0209624_101184671	3300027895	Forest Soil	YKGSDFMDLYRICGSTILGLIALMEPAFAGPTAVPGPIAGIGLPALALIGGAYWAGRKLFARK
Ga0209624_110202421	3300027895	Forest Soil	MSQYRFFGLATIGLAVLVEPAFAGTPAVPGPIAGIGLPALAVIGGAYWLGRKL
Ga0311339_113753341	3300029999	Palsa	VRNMYRVLGLATIGLTVLLNPAYAGINAAPGPIAGIGLPALALVGGAYWVGRKLFARKK
Ga0311339_113753342	3300029999	Palsa	MSVFRSFGLATVGLTVLMGPAFAEAPAPGPIAGIGVSALALIGGTYWVGRKLLARKK
Ga0316363_100390812	3300030659	Peatlands Soil	MWGGIVSQYGLFGLATIGLAVLVDPAFAGTPAVPGPITGIGLPALAVIGGAYWLGRKLLDRKK
Ga0316363_100390813	3300030659	Peatlands Soil	MNLYRISGWAIIGLIALMEPAFALNATPGPIAGIGLPALVLIGGVYWVGRKLLVRKK
Ga0316363_100390816	3300030659	Peatlands Soil	MNLYRIIGWFIIGLTVSVDSAFATPAVPGPIAGIGLPALAVIGGAYWLGRKLLVRKK
Ga0316363_100390817	3300030659	Peatlands Soil	MNLYRICGLTIIGLIAVTEPAFAEVAAPGPIAGIGLPALALIGGAYWVGRKLFPRK
Ga0265760_102810051	3300031090	Soil	LISTLQKAGVFVMYAYRILGFAAVGFAVLMGPALAGINATPGPIAGIGLPALAVIGGAYWIGRKVSARKK
Ga0265760_102810052	3300031090	Soil	MDLYRICGSTILGLIALMEPAFAGPTAVPGPIAGIGLPALALIGGAYWAGRKLFARK
Ga0302325_101478853	3300031234	Palsa	MSAYRIFGLATVGFTVLTSPAFAGPSTAAPGLIAGIGLPALALIGGTYWVGRKFFARKK
Ga0302325_101478854	3300031234	Palsa	MSAYRIFGFATVGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0302325_101478855	3300031234	Palsa	MWGCIMNLYRIFGCAIIGLIVLMEPAFAIQAVPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0302325_109479561	3300031234	Palsa	VYDGCCVRRGANVRSMYRVLGLATIGLTALLNPAYATINPAPGPIAGIGLPALALIGGAYWAGRKLFARKK
Ga0302325_130038691	3300031234	Palsa	MKNMYRSFGLATIGLIVLMGPVFAGPQSAAPGPIAGIGLSALALIGGTYWVGRRLFARKK
Ga0302324_1032365311	3300031236	Palsa	IGLGVLMGPAFAGSQTGPGPVAGIGLPALALIGGAYWVGRKLFAGKK
Ga0302324_1032365312	3300031236	Palsa	MSMYRIFGLATVGLIVLTGSAFAGPSPGPGPIAGIGLSALALIGGAYWVGRKLFAPKK
Ga0302326_104080451	3300031525	Palsa	RRGANIMSAYRIFGFATVGLTALMDPAFAGVPATPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0302326_113941301	3300031525	Palsa	MWGCIMNLYRIFGCAIIGLIVLMEPAFALQAVPGPIAGIGLPALALIGGAYWIGRKLFAHKK
Ga0310686_1141096782	3300031708	Soil	MSNYWIFGLATIGLAVLVDPAFAGINPAPGPIAGIGLPALAVIGGAYWVGRKMFSGTK
Ga0310686_1145052511	3300031708	Soil	MNIYRVLGLATVGLAILVDPAFAINAAPGPVAGIGLPALALIGGAYWAGRKLFGSQK
Ga0311301_1001757924	3300032160	Peatlands Soil	MNLYRIIGWSIIGLTVSVDSAFAQPAVPGPIAGIGLPALALIGGAFGGAYWIGRKVTARKNKK
Ga0335081_10000026179	3300032892	Soil	MTLFRVVGLAAIGFTVCVEPAFAGAAPVPGPIAGIGLPALAIIGGAYWLGRRLLVRKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072368

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences