Metagenome / Metatranscriptome Family F078309

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078309
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	52 residues
Representative Sequence	LRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILPVDASVLRVFEAAR
Number of Associated Samples	95
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.86 %
% of genes near scaffold ends (potentially truncated)	92.24 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.897 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.172 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.25% β-sheet: 0.00% Coil/Unstructured: 86.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00152	tRNA-synt_2	80.17
PF08207	EFP_N	3.45
PF04055	Radical_SAM	2.59
PF12544	LAM_C	1.72
PF09285	Elong-fact-P_C	1.72
PF03729	DUF308	0.86
PF01391	Collagen	0.86
PF01132	EFP	0.86
PF13353	Fer4_12	0.86
PF13358	DDE_3	0.86
PF01571	GCV_T	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	80.17
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	80.17
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	80.17
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	80.17
COG0231	Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	Translation, ribosomal structure and biogenesis [J]	4.31
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
All Organisms	root	All Organisms	43.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
cellular organisms	root	All Organisms → cellular organisms	43.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33.62 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	29.31 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.86 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	25.00 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1.72 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.86 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.45 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.59 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.86 %
Magnetospirillum gryphiswaldense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense	0.86 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	0.86 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.45 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.72 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.86 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.86 %
Magnetospirillum gryphiswaldense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense	0.86 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	0.86 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000886\|AL3A1W_1023670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	635	Open in IMG/M
3300001213\|JGIcombinedJ13530_100527701	Not Available	889	Open in IMG/M
3300001546\|JGI12659J15293_10115295	Not Available	584	Open in IMG/M
3300001593\|JGI12635J15846_10177073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300001593\|JGI12635J15846_10443398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	775	Open in IMG/M
3300001661\|JGI12053J15887_10031784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2968	Open in IMG/M
3300002245\|JGIcombinedJ26739_100699686	Not Available	892	Open in IMG/M
3300002245\|JGIcombinedJ26739_100701307	Not Available	890	Open in IMG/M
3300002245\|JGIcombinedJ26739_100839582	Not Available	800	Open in IMG/M
3300003484\|JGI26535J51212_1002735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	12327	Open in IMG/M
3300003485\|JGI26527J51213_1002905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	9997	Open in IMG/M
3300003505\|JGIcombinedJ51221_10217086	Not Available	776	Open in IMG/M
3300004082\|Ga0062384_100903877	Not Available	625	Open in IMG/M
3300004082\|Ga0062384_101192326	Not Available	553	Open in IMG/M
3300004091\|Ga0062387_100470322	Not Available	869	Open in IMG/M
3300005327\|Ga0070658_10197675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1696	Open in IMG/M
3300005341\|Ga0070691_10094529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1478	Open in IMG/M
3300005764\|Ga0066903_106687074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300005993\|Ga0080027_10017804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2524	Open in IMG/M
3300005993\|Ga0080027_10381521	Not Available	566	Open in IMG/M
3300005994\|Ga0066789_10143576	Not Available	1015	Open in IMG/M
3300006050\|Ga0075028_100142320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1259	Open in IMG/M
3300006057\|Ga0075026_100776961	Not Available	579	Open in IMG/M
3300006893\|Ga0073928_10616011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense	765	Open in IMG/M
3300007258\|Ga0099793_10461746	Not Available	628	Open in IMG/M
3300009029\|Ga0066793_10183684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1219	Open in IMG/M
3300009038\|Ga0099829_10537980	Not Available	970	Open in IMG/M
3300009090\|Ga0099827_10017886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4836	Open in IMG/M
3300009090\|Ga0099827_10692933	Not Available	880	Open in IMG/M
3300009143\|Ga0099792_10194801	Not Available	1148	Open in IMG/M
3300009143\|Ga0099792_10365224	Not Available	875	Open in IMG/M
3300010880\|Ga0126350_10123359	Not Available	650	Open in IMG/M
3300011269\|Ga0137392_10201317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1628	Open in IMG/M
3300011270\|Ga0137391_10230730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1607	Open in IMG/M
3300011270\|Ga0137391_10587132	Not Available	935	Open in IMG/M
3300011270\|Ga0137391_11317180	Not Available	569	Open in IMG/M
3300012096\|Ga0137389_10238711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1524	Open in IMG/M
3300012189\|Ga0137388_11457114	Not Available	623	Open in IMG/M
3300012200\|Ga0137382_10574302	Not Available	804	Open in IMG/M
3300012205\|Ga0137362_10107259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2358	Open in IMG/M
3300012285\|Ga0137370_10749973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	606	Open in IMG/M
3300012363\|Ga0137390_10126342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2534	Open in IMG/M
3300012363\|Ga0137390_10443513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300012685\|Ga0137397_10474638	Not Available	932	Open in IMG/M
3300012915\|Ga0157302_10120587	Not Available	855	Open in IMG/M
3300012925\|Ga0137419_10577406	Not Available	901	Open in IMG/M
3300012925\|Ga0137419_11244306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300012927\|Ga0137416_10435496	Not Available	1118	Open in IMG/M
3300012929\|Ga0137404_11096620	Not Available	730	Open in IMG/M
3300012929\|Ga0137404_12295221	Not Available	505	Open in IMG/M
3300012930\|Ga0137407_10543678	Not Available	1087	Open in IMG/M
3300012955\|Ga0164298_11391667	Not Available	542	Open in IMG/M
3300013772\|Ga0120158_10485908	Not Available	547	Open in IMG/M
3300014326\|Ga0157380_10212059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1727	Open in IMG/M
3300014501\|Ga0182024_10374923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1850	Open in IMG/M
3300014658\|Ga0181519_10814670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300015051\|Ga0137414_1219336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7200	Open in IMG/M
3300015089\|Ga0167643_1004248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1939	Open in IMG/M
3300018051\|Ga0184620_10144458	Not Available	766	Open in IMG/M
3300018076\|Ga0184609_10243687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	840	Open in IMG/M
3300018429\|Ga0190272_11054795	Not Available	782	Open in IMG/M
3300018429\|Ga0190272_12450413	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300018476\|Ga0190274_10524265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191	Open in IMG/M
3300018476\|Ga0190274_10827871	Not Available	986	Open in IMG/M
3300018476\|Ga0190274_13423159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	535	Open in IMG/M
3300018920\|Ga0190273_12130612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	524	Open in IMG/M
3300020004\|Ga0193755_1015023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2548	Open in IMG/M
3300020060\|Ga0193717_1018609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3031	Open in IMG/M
3300020140\|Ga0179590_1206852	Not Available	538	Open in IMG/M
3300020199\|Ga0179592_10021530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2872	Open in IMG/M
3300020579\|Ga0210407_10845346	Not Available	704	Open in IMG/M
3300020582\|Ga0210395_11153056	Not Available	571	Open in IMG/M
3300021170\|Ga0210400_11321601	Not Available	577	Open in IMG/M
3300021178\|Ga0210408_10429008	Not Available	1053	Open in IMG/M
3300021180\|Ga0210396_10360466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1281	Open in IMG/M
3300021401\|Ga0210393_10503348	Not Available	989	Open in IMG/M
3300021420\|Ga0210394_11572088	Not Available	554	Open in IMG/M
3300022534\|Ga0224452_1183844	Not Available	643	Open in IMG/M
3300022911\|Ga0247783_1096326	Not Available	806	Open in IMG/M
3300025321\|Ga0207656_10183094	Not Available	1006	Open in IMG/M
3300025509\|Ga0208848_1031916	Not Available	1142	Open in IMG/M
3300025924\|Ga0207694_10053112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3141	Open in IMG/M
3300026281\|Ga0209863_10014050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2502	Open in IMG/M
3300026281\|Ga0209863_10113146	Not Available	797	Open in IMG/M
3300026481\|Ga0257155_1068529	Not Available	569	Open in IMG/M
3300026489\|Ga0257160_1001469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2313	Open in IMG/M
3300026498\|Ga0257156_1005636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	2323	Open in IMG/M
3300026515\|Ga0257158_1008797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1512	Open in IMG/M
3300026555\|Ga0179593_1203176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4721	Open in IMG/M
3300027587\|Ga0209220_1027254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1533	Open in IMG/M
3300027603\|Ga0209331_1049566	Not Available	1063	Open in IMG/M
3300027674\|Ga0209118_1114025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	758	Open in IMG/M
3300027738\|Ga0208989_10014201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2726	Open in IMG/M
3300027738\|Ga0208989_10105931	Not Available	956	Open in IMG/M
3300027768\|Ga0209772_10198168	Not Available	635	Open in IMG/M
3300027903\|Ga0209488_10164403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1676	Open in IMG/M
3300027905\|Ga0209415_10835080	Not Available	636	Open in IMG/M
3300027911\|Ga0209698_10805587	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300028791\|Ga0307290_10200565	Not Available	731	Open in IMG/M
3300029314\|Ga0239302_114661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	990	Open in IMG/M
3300029907\|Ga0311329_10391351	Not Available	975	Open in IMG/M
3300029939\|Ga0311328_10921707	Not Available	574	Open in IMG/M
3300030294\|Ga0311349_10141532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2253	Open in IMG/M
3300030294\|Ga0311349_11620007	Not Available	599	Open in IMG/M
3300031231\|Ga0170824_114370167	Not Available	710	Open in IMG/M
3300031231\|Ga0170824_120242101	Not Available	526	Open in IMG/M
3300031234\|Ga0302325_13138901	Not Available	529	Open in IMG/M
3300031421\|Ga0308194_10364783	Not Available	518	Open in IMG/M
3300031521\|Ga0311364_11280709	Not Available	727	Open in IMG/M
3300031524\|Ga0302320_10424020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1661	Open in IMG/M
3300031524\|Ga0302320_10730196	Not Available	1116	Open in IMG/M
3300031708\|Ga0310686_100437866	Not Available	1185	Open in IMG/M
3300031718\|Ga0307474_11606846	Not Available	511	Open in IMG/M
3300031718\|Ga0307474_11619145	Not Available	508	Open in IMG/M
3300032001\|Ga0306922_10873237	Not Available	936	Open in IMG/M
3300034124\|Ga0370483_0180374	Not Available	715	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.97%
Host-Associated	Host-Associated	3.45%
Engineered	Engineered	2.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Aquatic	Environmental → Aquatic	11.21%
Plants	Host-Associated → Plants	3.45%
Bioremediation	Engineered → Bioremediation	1.72%
Wastewater	Engineered → Wastewater	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.00%
Peat	Environmental → Terrestrial → Peat	6.90%
Sediment	Environmental → Aquatic → Sediment	5.17%
Freshwater	Environmental → Aquatic → Freshwater	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.59%
Hydrocarbon	Engineered → Bioremediation → Hydrocarbon	1.72%
Marine	Environmental → Aquatic → Marine	0.86%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.17%
Loam	Environmental → Terrestrial → Soil → Loam	12.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified	1.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.07%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified	1.72%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.48%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	4.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.45%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Wastewater Bioreactor	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.86%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.86%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003484	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof	Engineered	Open in IMG/M
3300003485	Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof	Engineered	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022911	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300029314	Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_Gel1	Engineered	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL3A1W_10236702	3300000886	Permafrost	MTFKAAFPDIPARDRSGHVFPKIGRPETDEAVSGCNILILPVDASILRAVR*
JGIcombinedJ13530_1005277011	3300001213	Wetland	FPDILARDRSGHGRPEAIEAVSGCNILILSVYASVLRAGGAAR*
JGI12659J15293_101152952	3300001546	Forest Soil	MTFKAVFPDILARDRGWQGRPWELSGAVSGCNILILRFEASVLRPNKAIG*
JGI12635J15846_101770733	3300001593	Forest Soil	RIELAMTFKAAFPDILARDRSGHGRPEADEAVSGCNILILSVYASVLRAGGAAR*
JGI12635J15846_104433982	3300001593	Forest Soil	CSMTLPLRIELAMTFKAVFPDILARDQSGHERPEASEAVSGCNILILSRDASVLQPTLAGR*
JGI12053J15887_100317841	3300001661	Forest Soil	ADFPDILARDRSGHGRPGASEAVSGCNILILSIYASVLRAQKAAR*
JGIcombinedJ26739_1006996861	3300002245	Forest Soil	LPLRIELAMTFKAVFPDILARDQSGQGRPEASEAVSGCNILILPVYTSVLRAAR*
JGIcombinedJ26739_1007013072	3300002245	Forest Soil	KAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAVR*
JGIcombinedJ26739_1008395822	3300002245	Forest Soil	PLRIELAMTFKAAFPDILARDRSGHGRPEAIEAVSGCNILILSAYASVLRAGGAAR*
JGI26535J51212_100273518	3300003484	Wastewater Bioreactor	LPLRIELAMTLKAGFPKVRARDRSGQGRPAAVETVSGRNILIWPVGASVLRPIPVDC*
JGI26527J51213_100290516	3300003485	Wastewater Bioreactor	LPLRIELAMTLKAGFPKVRARDRSGQGRPAAVEAVSGRNILIWPVGASGLRPIPVDC*
JGIcombinedJ51221_102170861	3300003505	Forest Soil	MTFKAAFPDILARDRSGHGRPEADEAVSGCNILILSAYASVLR
Ga0062384_1009038772	3300004082	Bog Forest Soil	LPLRIELAMTFKAVFPDILARDRSGQGCPAAAEAVSGCNIMILSVDTSVLRAREAAR*
Ga0062384_1011923262	3300004082	Bog Forest Soil	VFPDILARDRAGHGRPEASEAVSGCNIMILPMDASILRADEAAR*
Ga0062387_1004703221	3300004091	Bog Forest Soil	PLRIELAMTFKAVFPDILARDRAVQGCSWRPLRAVSGCNILILCLEASVLQADGAIG*
Ga0070658_101976751	3300005327	Corn Rhizosphere	MTLPLRIELAMTFKAVFPGILARDQSGQGRPEASEAVSGCNILILPVDASVLRAAR*
Ga0070691_100945292	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTFKDVFPDILARDQSGQGRPEASEAVSGCNILILPVDASVLRAAR*
Ga0066903_1066870742	3300005764	Tropical Forest Soil	PSCSMTLPLRIELAMTLKAAFPDILAFDLSGHGRPRPSKRVSGCNILILPIDASVLRVLVHTLE*
Ga0080027_100178044	3300005993	Prmafrost Soil	LAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAAR*
Ga0080027_103815211	3300005993	Prmafrost Soil	LAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDTSVLRVFEAVR*
Ga0066789_101435761	3300005994	Soil	IELAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAVR*
Ga0075028_1001423201	3300006050	Watersheds	ILARDRSGQGRPEASEAVSGCNILILSVEASVLQAHEVAV*
Ga0075026_1007769611	3300006057	Watersheds	SMTLPLRIELAMTFKAVSPDNLARDQSGHGRPEAIEAVSGCNILILYLDASILLSREATR
Ga0073928_106160112	3300006893	Iron-Sulfur Acid Spring	MELAITFKAVFPDILARDRTGHGRPLASEAVSGCNILILPIYASVLRPKRGCAQIAEK*
Ga0099793_104617462	3300007258	Vadose Zone Soil	KAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRLFEAVR*
Ga0066793_101836843	3300009029	Prmafrost Soil	TLPLRIELAMTFKVVFPDVLARDRSGHGRPEASEAVSGCNILILPRDASVLRVFGATH*
Ga0099829_105379802	3300009038	Vadose Zone Soil	SCSMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAVR*
Ga0099827_100178867	3300009090	Vadose Zone Soil	LRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILPVYASVLRAAP*
Ga0099827_106929332	3300009090	Vadose Zone Soil	LRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAHEVAG*
Ga0099792_101948011	3300009143	Vadose Zone Soil	AVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA*
Ga0099792_103652242	3300009143	Vadose Zone Soil	ASDQSGHGCPAAIEAVSGRNILILSIYASVLRAQEVAR*
Ga0126350_101233592	3300010880	Boreal Forest Soil	LAMTFKAVFPDILARDRTGHGRPEASEAVSGCNILILRLDASVLRAAGAPR*
Ga0137392_102013173	3300011269	Vadose Zone Soil	SCSMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILPVDASVLRVFEAAR*
Ga0137391_102307303	3300011270	Vadose Zone Soil	LRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILPVDASVLRVFEAAR*
Ga0137391_105871322	3300011270	Vadose Zone Soil	FPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAVR*
Ga0137391_113171802	3300011270	Vadose Zone Soil	FPDILARDQSGQGRPEASEAVSGCNILILPVDASVLQAPR*
Ga0137389_102387113	3300012096	Vadose Zone Soil	AVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAVR*
Ga0137388_114571142	3300012189	Vadose Zone Soil	SCSMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA*
Ga0137382_105743021	3300012200	Vadose Zone Soil	LARDRSGQGRPEASEAVSGCNILILSLDASVLRADEAAC*
Ga0137362_101072593	3300012205	Vadose Zone Soil	TLPLRIELAMTLKAVFPDNLARDRTGQGRPGQREAASGRNILILSVRASFLRPFGVTG*
Ga0137370_107499732	3300012285	Vadose Zone Soil	LPSCSMTLPLRIELAMTLKAVFPGILARDRSEHGRPEASEAVSGCNILILSVDASVLRAFWVVR*
Ga0137390_101263423	3300012363	Vadose Zone Soil	FKAVFPDILARDQSGQGRPEASEAVSGCNILILPVYASVLRTAR*
Ga0137390_104435133	3300012363	Vadose Zone Soil	FKAVFPDILARDQSGQGRPEASEAVSGCNILILPVYASVLRAAR*
Ga0137397_104746382	3300012685	Vadose Zone Soil	RIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA*
Ga0157302_101205871	3300012915	Soil	ELAMTFKTVFRDILAPARSGQGRPGAVEAVSGCNILILPVDASNLRPDRAAC*
Ga0137419_105774062	3300012925	Vadose Zone Soil	RIELAMTFKADFPDILARDRSGHGRPGASEAVSGCNILILSVEASILRAFQAVC*
Ga0137419_112443061	3300012925	Vadose Zone Soil	ELAMTFKAVFPDVLARDRSGHGHPEASEAVSGCNILILPLDASFLRTFRGARPMA*
Ga0137416_104354962	3300012927	Vadose Zone Soil	SCSMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRLFEAVR*
Ga0137404_110966201	3300012929	Vadose Zone Soil	RIELAMTFKAVFPDILARDRSGHGRPEAIEAVSGCNILILPLLASVLRPDKVAC*
Ga0137404_122952211	3300012929	Vadose Zone Soil	RIELAMTFKAVFPDILARDRSGHGRPEAIEAVSGCNILILPVLASVLRPDEVAR*
Ga0137407_105436782	3300012930	Vadose Zone Soil	RIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLRAQEAVG*
Ga0164298_113916671	3300012955	Soil	IELAMTFKAVFPDILARDQSGQGRPEASEAVSGCNILILRHDASVLRPCEAAR*
Ga0120158_104859082	3300013772	Permafrost	AMTFKAAFPDILARDRSGHGRPEAIEAVSGCNILILSVYASVLRAGGAAR*
Ga0157380_102120593	3300014326	Switchgrass Rhizosphere	RIELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPVDASNLRPDRAAC*
Ga0182024_103749231	3300014501	Permafrost	FRIELAMTFKADFPDVLARDRSGHGRPEASEAVSGRNILILPIYASVLRVAAAAC*
Ga0181519_108146701	3300014658	Bog	ELAMTFKAVFPDILARDRSGQGCPAAVGAVSGCNIMILPLDTSILRACRVVR*
Ga0137414_12193362	3300015051	Vadose Zone Soil	MTLPLRIELAMTFKLFFLEFGFGNRSGHERPEAIEPVSGRNILILPPDASVLGQVSVG*
Ga0167643_10042483	3300015089	Glacier Forefield Soil	LRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILPLDASVLRADGAAR*
Ga0184620_101444581	3300018051	Groundwater Sediment	MTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA
Ga0184609_102436872	3300018076	Groundwater Sediment	MTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAG
Ga0190272_110547952	3300018429	Soil	RIELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPVDASSLRPDEAAR
Ga0190272_124504132	3300018429	Soil	FPDILAQARSGQGRPEAFEPVSGCNILILPLDASDLRAREALVNG
Ga0190274_105242651	3300018476	Soil	LAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPLDASSLRPDEAFR
Ga0190274_108278712	3300018476	Soil	ELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPVDTSNLRPNRAAR
Ga0190274_134231591	3300018476	Soil	ELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPVDASNLRPDRAAC
Ga0190273_121306122	3300018920	Soil	LAMTFKAVFPDILAPARSGQGRPGAAEAVSGCNILILPLDASSLRPDEAFR
Ga0193755_10150233	3300020004	Soil	MTLKAVFPDILARDRPEHGRPEASEAVSGCNILILSVEASILRAFQAVG
Ga0193717_10186092	3300020060	Soil	MTFKAVFPDILVRDRSGRDLPKIGRPEAFEPVSGCNILILPLDASDLRVREAPL
Ga0179590_12068521	3300020140	Vadose Zone Soil	PDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA
Ga0179592_100215305	3300020199	Vadose Zone Soil	MTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA
Ga0210407_108453461	3300020579	Soil	CSMTLPLRIELAMTFKAVFPDVLAPDRTGHGWLKAFAAASGRNILILPVDTSFLRLLGVC
Ga0210395_111530561	3300020582	Soil	LAMTFKAVFPDVLARDRSGHGRPEASEAVSGCNILILRLDASVLRAAGAPR
Ga0210400_113216011	3300021170	Soil	AVRTTESLPSCSMTLPLRIELAMTFKAVFPDILARDQSGHGRPEASEAVSGCNILILPVDASVLRAN
Ga0210408_104290081	3300021178	Soil	TLPLRIEMAMTFKAVFPDVLAPDRTGHGWLKAFAAASGRNILILPVDTSFLRLFGVCR
Ga0210396_103604661	3300021180	Soil	TLPWRIELAMTFKAVFPDVLAPDRTGHGWLKAFAAASGRNILILPVDTSFLRLFGVCR
Ga0210393_105033481	3300021401	Soil	CSMMLPLRIELAMTFKAVFPDILARDRGWQGRPWELSGAVSGCNILILRFEASVLRPNKAIG
Ga0210394_115720881	3300021420	Soil	LAMTFKAVFPDVLAPDRTGHGWLKAFAAASGRNILILPVDTSFLRLLGVCR
Ga0224452_11838441	3300022534	Groundwater Sediment	KAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAG
Ga0247783_10963261	3300022911	Plant Litter	FPDILAPARSGQGRPGAVEAVSGCNILILPVDASNLRPDRAAC
Ga0207656_101830942	3300025321	Corn Rhizosphere	ARDQSGLGRPEASEAVSGCNILILPVDASVLRAAR
Ga0208848_10319161	3300025509	Arctic Peat Soil	TFKAAFPDILARDRSGHGRPEAIEAVSGCNILILSVYASVLRAGGAAR
Ga0207694_100531121	3300025924	Corn Rhizosphere	TFKAVFPDILARDQSGQGRPEASEAVSGCNILILPVDASVLRAAR
Ga0209863_100140501	3300026281	Prmafrost Soil	VFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAAR
Ga0209863_101131462	3300026281	Prmafrost Soil	VFPDILARDRSGQGRPEASEAVSCCNILILPVDTSVLRVFEAVR
Ga0257155_10685291	3300026481	Soil	LARDRSGQGRPEASEAVSCCNILILPVDASVLRVYEAVR
Ga0257160_10014691	3300026489	Soil	SMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVFEAAR
Ga0257156_10056361	3300026498	Soil	PLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAA
Ga0257158_10087971	3300026515	Soil	MTFKAVFPDILARDRSGQGRPEASEAVSCCNILILPVDASVLRVYEAVR
Ga0179593_12031768	3300026555	Vadose Zone Soil	PSCSITLPLRIELAMTFKAVFPDILARDRSGHGRPEAIEAVSGCNILILPVLASVLRSDKVAC
Ga0209220_10272541	3300027587	Forest Soil	FKAVFPDILARDQSGQGRPEASEAVSGCNILILPVYTSDLRAAR
Ga0209331_10495662	3300027603	Forest Soil	AMTFKAVFPDILARDRSGHGRPEASEAVSGCNILILPVDASILRADEAAR
Ga0209118_11140252	3300027674	Forest Soil	ELAMTFKAVFPDILARDQSGHERPEASEAVSGCNILILSRDASVLQPTLAGR
Ga0208989_100142015	3300027738	Forest Soil	LPSCSMTLPLRIELAMTLKAVFPDILARDRSGHGRPEASEAVSGCNILILPIYASILQPQEAAR
Ga0208989_101059311	3300027738	Forest Soil	ADFPDILARDRSGHGRPGASEAVSGWNILILPVYASILRPQEAAH
Ga0209772_101981681	3300027768	Bog Forest Soil	SMMLPLRIELAMTFKAVFPDILARDRSGQGCPAAAEAVSGCNIMILSVDTSVLRAREAAR
Ga0209488_101644031	3300027903	Vadose Zone Soil	FKAAFPDVLARDRSGHGVPWASEAVSGCNILILPVDASDLGAYWAAR
Ga0209415_108350802	3300027905	Peatlands Soil	SMTFPLRIELAMTFKAVFPDILARDQSGHGRPAASEAVSGCNILILPVDASVLRAH
Ga0209698_108055872	3300027911	Watersheds	SMTLPLRIELAMTFKAAFPDILARDRSGHGRPEAIEAVSGCNILILSVYASVLRAGGAAR
Ga0307290_102005651	3300028791	Soil	SCSMTLPLRIELAMTFKAVFPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAG
Ga0239302_1146613	3300029314	Activated Sludge	MTLPLRIELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPLDASNLRP
Ga0311329_103913512	3300029907	Bog	SMTLPLRIELAMTFKAIFPDDLARDRSGHGRPEASEAVSGCNILILPVDASLLRGYEAAL
Ga0311328_109217072	3300029939	Bog	CSMTLPLRIELAMTFKAIFPDDLARDRSGHGRPEASEAVSGCNILILPVDASLLRGYEAA
Ga0311349_101415321	3300030294	Fen	MTFKAVFPDILARDRSGQGRPEASEAVSGCNILILTVDASVLRAFQAAC
Ga0311349_116200071	3300030294	Fen	CSITLPLRIELAMTFTGNFPKIQARDRSGRGCPVASEALSARNILISLVEASVLSLSGAV
Ga0170824_1143701672	3300031231	Forest Soil	FKAVVPDILALERAWQWCPWGPARAVSGCNILILRLEASILRTR
Ga0170824_1202421012	3300031231	Forest Soil	QMTFKAVFPDILGPSGLAGRERPKATRPVSGCNILILPRDASVLRVFGAGL
Ga0302325_131389011	3300031234	Palsa	PDILARDQSGHGRPEADEAVSGCNILILSVYASVLRAAGMAH
Ga0308194_103647832	3300031421	Soil	FPDILARDRSGQGRPEASEAVSGCNILILSVEASVLQAQEAAG
Ga0311364_112807092	3300031521	Fen	TFKAVFPDILARDRSGQGRPEASEAVSGCNILILTVDASVLRAFQAAC
Ga0302320_104240201	3300031524	Bog	MTLPLRIELAMTFKAVFPDILARDRTGHGRPGASEAVSACNILILPMDASILRPDQVTR
Ga0302320_107301961	3300031524	Bog	FKAIFPDDLARDRSGHGRPEASEAVSGCNILILPVDASLLRGYEAAL
Ga0310686_1004378661	3300031708	Soil	ELAMTFKAVFPDILARDRSGHGCPEASEAVSGCNILILPVDTSVLRADGALNR
Ga0307474_116068461	3300031718	Hardwood Forest Soil	FPDILARHQSGHGRPEADEAVSGCNILILSAYASVLRAGGTAR
Ga0307474_116191452	3300031718	Hardwood Forest Soil	SCSMMLPLRIELAMTFKAVFPDILARNRAWQGCPWRLSGAVSGCNILILCLEASVLRPDKAID
Ga0306922_108732372	3300032001	Soil	MTLPLRIELAMTLKAVFPDGLARHPEVGERPVAPEAVSGRNILILALRASLLRLFGAAC
Ga0370483_0180374_546_713	3300034124	Untreated Peat Soil	LRIELAMTFKAVFPDMLAQRRTGYGWFEACEAHSGRNILILEVRASLLASHRAPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078309

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences