NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003485

3300003485: Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof



Overview

Basic Information
IMG/M Taxon OID3300003485 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095079 | Ga0041900
Sample NameWastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size231297208
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Cape Town
CoordinatesLat. (o)-33.936637Long. (o)18.478905Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078309Metagenome / Metatranscriptome116Y
F087441Metagenome110N
F094111Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26527J51213_1002905All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter9997Open in IMG/M
JGI26527J51213_1024299All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1446Open in IMG/M
JGI26527J51213_1028687All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta1198Open in IMG/M
JGI26527J51213_1030217All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae1125Open in IMG/M
JGI26527J51213_1033021All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri1017Open in IMG/M
JGI26527J51213_1065745All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae566Open in IMG/M
JGI26527J51213_1069425All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea548Open in IMG/M
JGI26527J51213_1077193All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26527J51213_1002905JGI26527J51213_100290516F078309LPLRIELAMTLKAGFPKVRARDRSGQGRPAAVEAVSGRNILIWPVGASGLRPIPVDC*
JGI26527J51213_1024299JGI26527J51213_10242992F087441MEPLAVYGKSLIETNTNLSRSLSISILDEKGNEIPFETFSNPIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIEVNQSYFSFMIDNQQTVGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26527J51213_1028687JGI26527J51213_10286872F094111LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNSIISIESTKWNNCCRIWISKCNNQT*
JGI26527J51213_1030217JGI26527J51213_10302171F094111LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNGTTTIVAGTGVRGSESDMLTTPWGIFVDINL
JGI26527J51213_1033021JGI26527J51213_10330211F087441MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETNSNPIEFFIPRDPNLRIPRMILTNETFHSLNLTTDLLISIHFEIKANFSYRFVYKFDKQSTFTNSIEVNQSYFNFMIDNQQTMSH*TLIFGFKGENQEYEYRVYSSGCYYLNKENEWKGDDLRVGPKTNLSQIHCYSTHLT*
JGI26527J51213_1065745JGI26527J51213_10657451F094111FKFVAKSNSPFNNFPICSFISPLLLLFLVLTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNGTTTIVAGTGVRGSESDMLTTPWGIFVDINL
JGI26527J51213_1069425JGI26527J51213_10694251F087441MEPLAVYGKSLIESNTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLQILPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSTFTNSIEVNQSYFSFMLDNQQTIGHRILIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26527J51213_1077193JGI26527J51213_10771931F094111STDRLKQIVAIQMFLRICIGLFIYQQQYLTSSTFSFNQPRFRINATWNSIATTFADQSFVGTQSRGIFVNSNNSIYILNKNTGQIHIWLNENDLNPTKTISGSLSSPLSLFVTTNGDIYVDNGNNRRVNKWIVENERWISVMNVTSYCYGLFVDIYENLYCSMADNNRVD
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