NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079360

Metagenome / Metatranscriptome Family F079360

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079360
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 65 residues
Representative Sequence MRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Number of Associated Samples 102
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 63.48 %
% of genes near scaffold ends (potentially truncated) 45.69 %
% of genes from short scaffolds (< 2000 bps) 86.21 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (53.448 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil
(18.965 % of family members)
Environment Ontology (ENVO) Unclassified
(29.310 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.103 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 28.57%    β-sheet: 0.00%    Coil/Unstructured: 71.43%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF14023DUF4239 7.76
PF00027cNMP_binding 3.45
PF00497SBP_bac_3 1.72
PF06411HdeA 1.72
PF00072Response_reg 0.86
PF03330DPBB_1 0.86
PF12860PAS_7 0.86
PF07719TPR_2 0.86


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.45 %
UnclassifiedrootN/A46.55 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886007|SwRhRL2b_contig_1771080All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis816Open in IMG/M
2162886013|SwBSRL2_contig_10030663All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis920Open in IMG/M
3300000041|ARcpr5oldR_c000042All Organisms → cellular organisms → Bacteria → Proteobacteria23802Open in IMG/M
3300000787|JGI11643J11755_11600911All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis704Open in IMG/M
3300000881|JGI10215J12807_1166050Not Available918Open in IMG/M
3300001430|JGI24032J14994_100732Not Available1680Open in IMG/M
3300001979|JGI24740J21852_10132822Not Available621Open in IMG/M
3300002128|JGI24036J26619_10000056All Organisms → cellular organisms → Bacteria → Proteobacteria20195Open in IMG/M
3300002155|JGI24033J26618_1004625Not Available1490Open in IMG/M
3300003994|Ga0055435_10110282All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis736Open in IMG/M
3300004114|Ga0062593_100329428All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1321Open in IMG/M
3300004114|Ga0062593_100937007Not Available880Open in IMG/M
3300004114|Ga0062593_100992922Not Available860Open in IMG/M
3300004156|Ga0062589_100452799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1064Open in IMG/M
3300004156|Ga0062589_101647395All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis638Open in IMG/M
3300004479|Ga0062595_101159362Not Available682Open in IMG/M
3300004479|Ga0062595_101259473Not Available662Open in IMG/M
3300004480|Ga0062592_100881595All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis804Open in IMG/M
3300004643|Ga0062591_100646954All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis945Open in IMG/M
3300004643|Ga0062591_102497051Not Available543Open in IMG/M
3300005165|Ga0066869_10127788Not Available532Open in IMG/M
3300005276|Ga0065717_1005905Not Available831Open in IMG/M
3300005366|Ga0070659_100181284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1729Open in IMG/M
3300005458|Ga0070681_10004662All Organisms → cellular organisms → Bacteria → Proteobacteria13104Open in IMG/M
3300005529|Ga0070741_10019850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10693Open in IMG/M
3300005535|Ga0070684_100156478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2067Open in IMG/M
3300005545|Ga0070695_100119678All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1799Open in IMG/M
3300005546|Ga0070696_101673756Not Available548Open in IMG/M
3300005578|Ga0068854_100504985Not Available1019Open in IMG/M
3300005617|Ga0068859_100789154All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1038Open in IMG/M
3300006058|Ga0075432_10269316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis697Open in IMG/M
3300006574|Ga0074056_11718744All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis673Open in IMG/M
3300006806|Ga0079220_10947452Not Available675Open in IMG/M
3300006880|Ga0075429_101511795Not Available584Open in IMG/M
3300009011|Ga0105251_10152619Not Available1043Open in IMG/M
3300009101|Ga0105247_10009022All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium6073Open in IMG/M
3300009147|Ga0114129_12360483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis638Open in IMG/M
3300009176|Ga0105242_10362861All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1341Open in IMG/M
3300010373|Ga0134128_12041014Not Available631Open in IMG/M
3300010373|Ga0134128_12176071Not Available611Open in IMG/M
3300012476|Ga0157344_1023853Not Available546Open in IMG/M
3300012478|Ga0157328_1021550All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis548Open in IMG/M
3300012484|Ga0157333_1016369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis614Open in IMG/M
3300012883|Ga0157281_1000523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium2619Open in IMG/M
3300012892|Ga0157294_10013796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1465Open in IMG/M
3300012892|Ga0157294_10228042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis562Open in IMG/M
3300012896|Ga0157303_10307557Not Available509Open in IMG/M
3300012902|Ga0157291_10395380Not Available510Open in IMG/M
3300012911|Ga0157301_10194663Not Available678Open in IMG/M
3300012943|Ga0164241_10754597Not Available708Open in IMG/M
3300012955|Ga0164298_10006004All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4391Open in IMG/M
3300012958|Ga0164299_10000376All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10203Open in IMG/M
3300013096|Ga0157307_1132447All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis563Open in IMG/M
3300013105|Ga0157369_12095572All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis574Open in IMG/M
3300013297|Ga0157378_10926968Not Available903Open in IMG/M
3300014269|Ga0075302_1051603All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis830Open in IMG/M
3300014299|Ga0075303_1007857All Organisms → cellular organisms → Bacteria → Proteobacteria1353Open in IMG/M
3300014320|Ga0075342_1022645All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1438Open in IMG/M
3300014326|Ga0157380_10202651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1762Open in IMG/M
3300015371|Ga0132258_11896322All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1500Open in IMG/M
3300015372|Ga0132256_100496922Not Available1330Open in IMG/M
3300015372|Ga0132256_102242582Not Available650Open in IMG/M
3300015373|Ga0132257_101541020Not Available849Open in IMG/M
3300015374|Ga0132255_101316568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1090Open in IMG/M
3300015374|Ga0132255_104324567Not Available602Open in IMG/M
3300015374|Ga0132255_104673114Not Available580Open in IMG/M
3300019356|Ga0173481_10000971All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6642Open in IMG/M
3300019361|Ga0173482_10327621Not Available685Open in IMG/M
3300022880|Ga0247792_1139143Not Available520Open in IMG/M
3300022889|Ga0247785_1011567All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis917Open in IMG/M
3300023057|Ga0247797_1002381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1865Open in IMG/M
3300023077|Ga0247802_1063578Not Available600Open in IMG/M
3300024055|Ga0247794_10034541All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1326Open in IMG/M
3300025735|Ga0207713_1098124All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1016Open in IMG/M
3300025900|Ga0207710_10099307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1371Open in IMG/M
3300025911|Ga0207654_10008297All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5247Open in IMG/M
3300025911|Ga0207654_10033889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2834Open in IMG/M
3300025914|Ga0207671_11142628Not Available611Open in IMG/M
3300025917|Ga0207660_10172789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1674Open in IMG/M
3300025917|Ga0207660_10624833Not Available878Open in IMG/M
3300025930|Ga0207701_10288951All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1425Open in IMG/M
3300026023|Ga0207677_11113097Not Available720Open in IMG/M
3300026088|Ga0207641_10709348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis991Open in IMG/M
3300026088|Ga0207641_12332760Not Available534Open in IMG/M
3300026718|Ga0207501_101490All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis629Open in IMG/M
3300026764|Ga0207470_101068Not Available786Open in IMG/M
3300026769|Ga0207492_102625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis586Open in IMG/M
3300026834|Ga0207583_1002865Not Available624Open in IMG/M
3300026952|Ga0207434_1003820Not Available1090Open in IMG/M
3300026976|Ga0207525_103284Not Available777Open in IMG/M
3300027399|Ga0207608_100051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1562Open in IMG/M
3300027400|Ga0207560_104181Not Available592Open in IMG/M
3300027410|Ga0207541_101055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis888Open in IMG/M
3300027444|Ga0207468_1003272Not Available817Open in IMG/M
3300027477|Ga0207456_103162Not Available561Open in IMG/M
3300027543|Ga0209999_1045128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis829Open in IMG/M
3300027560|Ga0207981_1056996Not Available715Open in IMG/M
3300027717|Ga0209998_10030757All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1187Open in IMG/M
3300027876|Ga0209974_10054631Not Available1346Open in IMG/M
3300028380|Ga0268265_12192862Not Available559Open in IMG/M
3300028381|Ga0268264_12687211Not Available502Open in IMG/M
3300028589|Ga0247818_10990850Not Available594Open in IMG/M
(restricted) 3300031197|Ga0255310_10004269All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3733Open in IMG/M
(restricted) 3300031197|Ga0255310_10017060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1864Open in IMG/M
3300031226|Ga0307497_10055735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1404Open in IMG/M
(restricted) 3300031248|Ga0255312_1014061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1912Open in IMG/M
3300031562|Ga0310886_10274993Not Available952Open in IMG/M
3300031716|Ga0310813_11104024Not Available727Open in IMG/M
3300031908|Ga0310900_10352507Not Available1101Open in IMG/M
3300031944|Ga0310884_10782135Not Available582Open in IMG/M
3300032003|Ga0310897_10111944All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1100Open in IMG/M
3300032012|Ga0310902_10002042All Organisms → cellular organisms → Bacteria → Proteobacteria6939Open in IMG/M
3300032075|Ga0310890_10464459Not Available954Open in IMG/M
3300032144|Ga0315910_10363284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1105Open in IMG/M
3300033004|Ga0335084_10131005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2608Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil18.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil6.03%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere6.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.31%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.59%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.59%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil2.59%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.59%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.59%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.59%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.72%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.72%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.86%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.86%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.86%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.86%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886007Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
2162886013Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300000041Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphereHost-AssociatedOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300001430Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5EnvironmentalOpen in IMG/M
3300001979Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6Host-AssociatedOpen in IMG/M
3300002128Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5EnvironmentalOpen in IMG/M
3300002155Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7Host-AssociatedOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005165Soil and rhizosphere microbial communities from Laval, Canada - mgHMCEnvironmentalOpen in IMG/M
3300005276Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300012476Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610Host-AssociatedOpen in IMG/M
3300012478Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610Host-AssociatedOpen in IMG/M
3300012484Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510EnvironmentalOpen in IMG/M
3300012883Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1EnvironmentalOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014269Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1EnvironmentalOpen in IMG/M
3300014299Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1EnvironmentalOpen in IMG/M
3300014320Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300022889Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026718Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026764Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026769Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026834Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-10 (SPAdes)EnvironmentalOpen in IMG/M
3300026903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026952Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)EnvironmentalOpen in IMG/M
3300026976Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027399Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027400Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027410Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027444Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027477Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10.2A4w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027543Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027560Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)EnvironmentalOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SwRhRL2b_0891.000062502162886007Switchgrass RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
SwBSRL2_0091.000042802162886013Switchgrass RhizosphereMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
ARcpr5oldR_00004273300000041Arabidopsis RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
JGI11643J11755_1160091123300000787SoilMRRTLTVAAIAVLVLTGIAKLVAAPSRTAXDTDTSIQPTXSIYDLHTGYRGMSTLPVAEIPQP*
JGI10215J12807_116605013300000881SoilHKSHGRIGARMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
JGI24032J14994_10073213300001430Corn, Switchgrass And Miscanthus RhizosphereGDLGTSWKEPLMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
JGI24740J21852_1013282213300001979Corn RhizosphereIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
JGI24036J26619_10000056203300002128Corn, Switchgrass And Miscanthus RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGXNTLPVAEIPQP*
JGI24033J26618_100462533300002155Corn, Switchgrass And Miscanthus RhizosphereLGDLGTSWKEPLMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0055435_1011028223300003994Natural And Restored WetlandsMRRALTVAAITVLVFAGIAKLVASPSRTAVGTDTSIQPTISIYDLHAGYSG
Ga0062593_10032942833300004114SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAEIPQP*
Ga0062593_10093700733300004114SoilMRRTLTIAAISVLILAGIAQLVAAPSRIAGRTDTSIQPTISPHDLHTGYPGIHLLPVEEVPQP*
Ga0062593_10099292223300004114SoilVLNKCEAAHKSNDRIGARIIRGHPGKDPLMRRTLTIAAIAVLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLLPVEEIPQP*
Ga0062589_10045279913300004156SoilMRRALTVAAIAVLVFTGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYRGVHLLPVEEIPQP*
Ga0062589_10164739513300004156SoilMRRTLTVAAIAVLVLTGIAKLVAAPSRTAVDTDTSIQPTISIYDLHTGYRGM
Ga0062595_10115936223300004479SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0062595_10125947323300004479SoilMSWGRPGMEPLMRRALTVAAIAVLVFTGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYRGVHLLPVEEIPQP*
Ga0062592_10088159523300004480SoilMMWGHPGKEPLMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTEIPQP*
Ga0062591_10064695423300004643SoilMRRTLTIAAIAVLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLLPVEEIPQP*
Ga0062591_10249705123300004643SoilMIWGHPGMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAEIPQP*
Ga0066869_1012778813300005165SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTTIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0065717_100590513300005276Arabidopsis RhizosphereMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0070659_10018128423300005366Corn RhizosphereMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTEIPQP*
Ga0070681_10004662103300005458Corn RhizosphereMRQTLTVAAVAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0070741_1001985073300005529Surface SoilMRRTLTIAAIAVLVFAGVVRLVAAPSRTAGGIDDSLQTAISIQDLHAGYPAMDRLPVEAVPQP*
Ga0070684_10015647813300005535Corn RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEI
Ga0070695_10011967833300005545Corn, Switchgrass And Miscanthus RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTEIPQP*
Ga0070696_10167375613300005546Corn, Switchgrass And Miscanthus RhizosphereMRRTLTVAAIAVLVLTGIAKLVAAPSRTAADPDTSIQPTISIYDLHTGYRGMDTLPVAEIPQP*
Ga0068854_10050498533300005578Corn RhizosphereCEVAHKSNGRTSARMMWGHPGKEPLMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0068859_10078915413300005617Switchgrass RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAE
Ga0075432_1026931623300006058Populus RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPG
Ga0074056_1171874413300006574SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0079220_1094745223300006806Agricultural SoilMRRTLTVAAIAVLVFAGIAKLVAAPSGHVAGKDTSIQPTISTYSLQAGYPGVHLLPVDQIPQP*
Ga0075429_10151179513300006880Populus RhizosphereGARMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0105251_1015261923300009011Switchgrass RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDSSVQPTISTYDLHTGYRGMNTLPVAEIPPP*
Ga0105247_1000902233300009101Switchgrass RhizosphereMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAEIPQP*
Ga0114129_1236048323300009147Populus RhizosphereMRRTLAVAAIAVLVLTGIAKLVAAPSRTAVDTDTSIQPTISIYDLHTGYRGMSTLPVAEI
Ga0105242_1036286123300009176Miscanthus RhizosphereMMRGHPGKEPLMRRTLTVAAIAILVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0134128_1204101423300010373Terrestrial SoilMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPV
Ga0134128_1217607113300010373Terrestrial SoilTIAAIAVLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLLPVEEIPQP*
Ga0157344_102385313300012476Arabidopsis RhizosphereLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0157328_102155013300012478Arabidopsis RhizosphereMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGY
Ga0157333_101636913300012484SoilMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHIGYPGMNTLPVAE
Ga0157281_100052313300012883SoilTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0157294_1001379633300012892SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDSSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0157294_1022804213300012892SoilMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLP
Ga0157303_1030755723300012896SoilRTLTVAAIAVLVLTGIAKLVAAPSRTAADTDTSIQPTISIYDLHTGYRGMDTLPVAEIPQP*
Ga0157291_1039538013300012902SoilPLMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0157301_1019466313300012911SoilVHKSHGRIGARMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0164241_1075459713300012943SoilAHRSYGHIGARLTWGHPGKEPLMRRTLTVAAIAVLVLTGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0164298_1000600413300012955SoilQTLTVAAIAVLVFAAIAELVAAPSRHAAGGDSSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0164299_1000037683300012958SoilMRQTLTVAAIAVLVFAAIAELVAAPIRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP*
Ga0157307_113244713300013096SoilMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVA
Ga0157369_1209557223300013105Corn RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGV
Ga0157378_1092696823300013297Miscanthus RhizosphereMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP*
Ga0075302_105160313300014269Natural And Restored WetlandsMMWGHPGKGALMRRALTVAAITVLVFAGIAKLVAAPGRTAAGTDTSIQPTISIYDLHAGYSGINTLPVAEIPQP*
Ga0075303_100785713300014299Natural And Restored WetlandsMRRALTVAAITVLVFAGIAKLVAAPGRTAAGTDTSIQPTISIYDLHAGYSGMNTLPVAEIPQP*
Ga0075342_102264533300014320Natural And Restored WetlandsMRRALTVAAITVLVFAGIAKLVASPSRTAVGTDTSIQPTISIYDLHAGYSGMNTLPVAEIPQP*
Ga0157380_1020265143300014326Switchgrass RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAE
Ga0132258_1189632233300015371Arabidopsis RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDASIQPTISIYDLHAGYPGMNTLPVTEIPQP*
Ga0132256_10049692223300015372Arabidopsis RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNALPVAEIPQP*
Ga0132256_10224258213300015372Arabidopsis RhizosphereMERLMRRTLTVAAIAVLVFAGIAKLVAAPSWTAAGTDISAQPTISTYDLHTGYRGVNLLPIAEIPQP*
Ga0132257_10154102013300015373Arabidopsis RhizosphereMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDISAQPTISTYDLHTGYRGVNLLPIAEIPQP*
Ga0132255_10131656823300015374Arabidopsis RhizosphereMRRTLTVAAIAVLVFAGISKLAAAPSRTASGTDASIQPTISIYDLHAGYPGMNTLPV
Ga0132255_10432456713300015374Arabidopsis RhizosphereGRIGARMMRGHPGKEPPMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDASIQPTISIYDLHAGYPGMNTLPVTEIPQP*
Ga0132255_10467311423300015374Arabidopsis RhizosphereMERLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAADTDTSIQPTISIYDLHTGYRGMDTLPVAEIPQP*
Ga0173481_1000097183300019356SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0173482_1032762113300019361SoilMRRTLTIAAIAVLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLL
Ga0247792_113914313300022880SoilLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLLPVEEIPQP
Ga0247785_101156733300022889SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGVNTLPVAEIPQP
Ga0247797_100238113300023057SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAE
Ga0247802_106357823300023077SoilAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0247794_1003454133300024055SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPV
Ga0207713_109812433300025735Switchgrass RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQ
Ga0207710_1009930713300025900Switchgrass RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAEIPQP
Ga0207654_1000829793300025911Corn RhizosphereIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0207654_1003388953300025911Corn RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGM
Ga0207671_1114262813300025914Corn RhizosphereSHGRIGARMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207660_1017278913300025917Corn RhizosphereMRRTLTVAAIAVLVLTGIAKLVAAPSRTAADPDTSIQPTISIYDLHTGYRGMDTLPVAEIPQP
Ga0207660_1062483323300025917Corn RhizosphereMRRTLTIAAIAVLILAGIAQLVAAPSRIAAGTDTSIQPTISPHDLHTGYSGIYLLPVEEIPQP
Ga0207701_1028895113300025930Corn, Switchgrass And Miscanthus RhizosphereMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTKIPQP
Ga0207677_1111309733300026023Miscanthus RhizosphereMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEI
Ga0207641_1070934823300026088Switchgrass RhizosphereMRRTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLP
Ga0207641_1233276023300026088Switchgrass RhizosphereTLTVAAIAVLVFAGIAKLVAAPSRTAGTDLSAQPTISTYDLHTGYRGVNLLPVAEIPQP
Ga0207501_10149013300026718SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLP
Ga0207470_10106833300026764SoilMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207492_10262523300026769SoilMRRTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0207583_100286513300026834SoilPAHWCKGDLGTSWKEPLMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0207462_100028813300026903SoilLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207434_100382023300026952SoilMRQTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207525_10328423300026976SoilMRRTLTVAAIAVLVLTGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207608_10005133300027399SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207560_10418113300027400SoilMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207541_10105523300027410SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTL
Ga0207468_100327223300027444SoilMRQTLTVAAIAVLVFAAIAELVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207456_10316223300027477SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMDTLPVAEIPQP
Ga0209999_104512823300027543Arabidopsis Thaliana RhizosphereMRRTLTVAAIAVLVLTGIAKLVAAPSRTAVDTDTSIQPTISIYDLHTGYRGMSTLPVAEIPQP
Ga0207981_105699623300027560SoilVHKSHGRIGARMMRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0209998_1003075723300027717Arabidopsis Thaliana RhizosphereMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISTYDLQAGYPGMNTLPVAEIPQP
Ga0209974_1005463133300027876Arabidopsis Thaliana RhizosphereMRRALTVAAIAMLVFAGIAKLVAAPSRTAAGTDASIQPTISTYDLQAGYPGMNTLPVAEIPQP
Ga0268265_1219286213300028380Switchgrass RhizosphereMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTEIPQP
Ga0268264_1268721113300028381Switchgrass RhizosphereGKEPLMRRALTVAAIAVVVFAGIAKLVAAPSRTAAGTDASIQPTISIDDLYAGYPGMNTLPVTEIPQP
Ga0247818_1099085013300028589SoilGKEPLMRRTFTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
(restricted) Ga0255310_1000426963300031197Sandy SoilMRRTLTVAAIAVLVLTGIAKLVAAPSRTAVDTDTSIQPTISIYDLHTGYRGVLPVAEIPE
(restricted) Ga0255310_1001706033300031197Sandy SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAVGTDTSIQSTISTYGLHTGYPGMNTLPVAEIPQP
Ga0307497_1005573523300031226SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISIYDLHTGYPGTNTLPVAEIPQP
(restricted) Ga0255312_101406113300031248Sandy SoilMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISIYDLHTGYPGTNTLPVTEIPQP
Ga0310886_1027499333300031562SoilRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0310813_1110402423300031716SoilMRRALTVAAIAMLVFAGIAKLVAAPSRTAGTDASIQPTISTYDLHAGYPGVNTLPVAEIPQP
Ga0310900_1035250723300031908SoilLGTSWKEPLMRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0310884_1078213513300031944SoilGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0310897_1011194433300032003SoilLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0310902_1000204213300032012SoilQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQ
Ga0310890_1046445913300032075SoilGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0315910_1036328423300032144SoilMRRTLTVAAIAVLVLTGIAKLVAAPSRTAADTDTSIQPTISIYDLHTGYRGMSTLPVAEIPQP
Ga0335084_1013100543300033004SoilMRRALTVAAIAVLVFAGIAKLVAAPSKTAAGTDASIQPTISIDDLHAGYPGMNTLPVTEIPQP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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