Basic Information | |
---|---|
IMG/M Taxon OID | 3300026764 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072055 | Ga0207470 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 15355255 |
Sequencing Scaffolds | 15 |
Novel Protein Genes | 15 |
Associated Families | 15 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 2 |
Not Available | 9 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
All Organisms → cellular organisms → Archaea | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001033 | Metagenome / Metatranscriptome | 799 | Y |
F007536 | Metagenome / Metatranscriptome | 349 | Y |
F010565 | Metagenome | 302 | Y |
F017145 | Metagenome / Metatranscriptome | 242 | Y |
F024545 | Metagenome / Metatranscriptome | 205 | Y |
F029216 | Metagenome / Metatranscriptome | 189 | Y |
F038480 | Metagenome | 166 | Y |
F040185 | Metagenome | 162 | N |
F048397 | Metagenome / Metatranscriptome | 148 | N |
F054450 | Metagenome / Metatranscriptome | 140 | Y |
F055072 | Metagenome / Metatranscriptome | 139 | N |
F078804 | Metagenome | 116 | N |
F079360 | Metagenome / Metatranscriptome | 116 | N |
F092662 | Metagenome / Metatranscriptome | 107 | Y |
F099400 | Metagenome / Metatranscriptome | 103 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0207470_100048 | All Organisms → cellular organisms → Bacteria | 1728 | Open in IMG/M |
Ga0207470_100087 | All Organisms → cellular organisms → Bacteria | 1491 | Open in IMG/M |
Ga0207470_101068 | Not Available | 786 | Open in IMG/M |
Ga0207470_101127 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 773 | Open in IMG/M |
Ga0207470_101272 | Not Available | 740 | Open in IMG/M |
Ga0207470_101280 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 738 | Open in IMG/M |
Ga0207470_101543 | Not Available | 692 | Open in IMG/M |
Ga0207470_101698 | Not Available | 668 | Open in IMG/M |
Ga0207470_101850 | Not Available | 650 | Open in IMG/M |
Ga0207470_102614 | Not Available | 571 | Open in IMG/M |
Ga0207470_102794 | All Organisms → cellular organisms → Archaea | 556 | Open in IMG/M |
Ga0207470_102825 | Not Available | 553 | Open in IMG/M |
Ga0207470_102853 | Not Available | 551 | Open in IMG/M |
Ga0207470_103061 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae | 535 | Open in IMG/M |
Ga0207470_103616 | Not Available | 502 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0207470_100048 | Ga0207470_1000481 | F099400 | LTIVRHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG |
Ga0207470_100087 | Ga0207470_1000871 | F007536 | ALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR |
Ga0207470_101068 | Ga0207470_1010683 | F079360 | MRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP |
Ga0207470_101127 | Ga0207470_1011272 | F038480 | MKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACIASGAFCIDLCH |
Ga0207470_101272 | Ga0207470_1012721 | F040185 | PTPVVVVTDTIGAADSALPLSMKVTSYVPDTNIVLKGLAVGTTLTSGASVGDREWRINIEDLQNAYVIPPQGFVGPMAFVAELRDIDGHPLLRAPGQFTWTAVDPSSATAGKEPAEEEPPVTAVASAADAGNQQLIGQFVGQKEEVVLPKPRPIKHASLGGKATKPKKQIARAHGYKERMPRRDLGADTRWASNELPPHSLFSEPDRRRERRAIVDGIFRSLFYGGDANECEPATLERGTQKKSGD |
Ga0207470_101280 | Ga0207470_1012801 | F001033 | MCGPSLIVRLTIAVFVFLILGVASVIHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDAKIVFNTSYHFPAPRP |
Ga0207470_101543 | Ga0207470_1015432 | F029216 | GCTTLGGSAMYMLIVVIGVLSQGASVLPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGATWYCTYSGTN |
Ga0207470_101698 | Ga0207470_1016981 | F017145 | MAARKSSHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE |
Ga0207470_101850 | Ga0207470_1018501 | F092662 | RIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR |
Ga0207470_102614 | Ga0207470_1026141 | F024545 | DRMARPKKPKVQIKRTKTSLGWAYRIYLDGHYMGTGLTQASAREGAKRMFVTYERGRQMRRPLT |
Ga0207470_102794 | Ga0207470_1027941 | F054450 | MHDSLYGNYPLSNKHRPTPTVRPVNRSKEQLQEFRDIISNPRTSQDSKKRFMVEKGGG |
Ga0207470_102825 | Ga0207470_1028253 | F010565 | MSDARHEVDERWILRTELLWAFGVGVFIAAALGMILFT |
Ga0207470_102853 | Ga0207470_1028531 | F055072 | PNLRSGKNRAASFLIWFISGLYLLGMVWFLLSTVGDYSAQDTPPWLVSAVGACTVSYGILMVMFWPFENVSPEGRPERPVR |
Ga0207470_103061 | Ga0207470_1030611 | F048397 | VHNSTIFRAILEKNKCDKCNLTIHPNFMGNHKCDHQNCPICKNPITPSQYWPHIRSHPGHENDSPPLPKRNMYENRNNENHSGYGNYQRN |
Ga0207470_103616 | Ga0207470_1036161 | F078804 | KIFAEREVGMNFVYATLCSVAVLVLCGATAPAFGYVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCKE |
⦗Top⦘ |