NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F080479

Metagenome / Metatranscriptome Family F080479

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F080479
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 70 residues
Representative Sequence MRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN
Number of Associated Samples 76
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 66.96 %
% of genes near scaffold ends (potentially truncated) 32.17 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.652 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere
(31.304 % of family members)
Environment Ontology (ENVO) Unclassified
(65.217 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.957 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 14.14%    β-sheet: 27.27%    Coil/Unstructured: 58.59%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF13507GATase_5 63.48
PF02700PurS 6.96
PF02771Acyl-CoA_dh_N 3.48
PF14508GH97_N 1.74
PF12872OST-HTH 1.74
PF00144Beta-lactamase 1.74
PF00664ABC_membrane 0.87
PF00072Response_reg 0.87
PF07730HisKA_3 0.87
PF03462PCRF 0.87
PF13557Phenol_MetA_deg 0.87
PF01641SelR 0.87
PF02913FAD-oxidase_C 0.87
PF13533Biotin_lipoyl_2 0.87
PF00005ABC_tran 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG1828Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunitNucleotide transport and metabolism [F] 6.96
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 3.48
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 1.74
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 1.74
COG2367Beta-lactamase class ADefense mechanisms [V] 1.74
COG0216Protein chain release factor RF1Translation, ribosomal structure and biogenesis [J] 0.87
COG0229Peptide methionine sulfoxide reductase MsrBPosttranslational modification, protein turnover, chaperones [O] 0.87
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 0.87
COG1186Protein chain release factor PrfBTranslation, ribosomal structure and biogenesis [J] 0.87
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 0.87
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.87
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.87
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 0.87

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.65 %
UnclassifiedrootN/A4.35 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_16844719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1092Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105804523All Organisms → cellular organisms → Bacteria3155Open in IMG/M
3300000956|JGI10216J12902_113236086Not Available568Open in IMG/M
3300004114|Ga0062593_100026605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00573200Open in IMG/M
3300004114|Ga0062593_101933476All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas653Open in IMG/M
3300004463|Ga0063356_101560003Not Available981Open in IMG/M
3300004480|Ga0062592_102017059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas570Open in IMG/M
3300004480|Ga0062592_102646630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas507Open in IMG/M
3300005093|Ga0062594_100031883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2433Open in IMG/M
3300005330|Ga0070690_101539539All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas538Open in IMG/M
3300005331|Ga0070670_100978963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas769Open in IMG/M
3300005354|Ga0070675_100081929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2692Open in IMG/M
3300005355|Ga0070671_100098841All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00072448Open in IMG/M
3300005356|Ga0070674_100710543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas860Open in IMG/M
3300005364|Ga0070673_100041134All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00073551Open in IMG/M
3300005366|Ga0070659_100416359All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1136Open in IMG/M
3300005455|Ga0070663_102097685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057509Open in IMG/M
3300005457|Ga0070662_100012431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00075647Open in IMG/M
3300005507|Ga0074259_11754585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas517Open in IMG/M
3300005548|Ga0070665_100043572All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas4510Open in IMG/M
3300005577|Ga0068857_102113474All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas553Open in IMG/M
3300005617|Ga0068859_102638260All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas553Open in IMG/M
3300005718|Ga0068866_10716874All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas688Open in IMG/M
3300005840|Ga0068870_10291580Not Available1026Open in IMG/M
3300005873|Ga0075287_1043415All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas606Open in IMG/M
3300005985|Ga0081539_10040943All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2714Open in IMG/M
3300006169|Ga0082029_1003248All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3962Open in IMG/M
3300006169|Ga0082029_1212083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas540Open in IMG/M
3300006169|Ga0082029_1320068All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00074089Open in IMG/M
3300006353|Ga0075370_10746053All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas596Open in IMG/M
3300010227|Ga0136219_1000063All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas12302Open in IMG/M
3300011107|Ga0151490_1052517All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1269Open in IMG/M
3300012212|Ga0150985_119731135All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas771Open in IMG/M
3300012212|Ga0150985_121418088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas503Open in IMG/M
3300012469|Ga0150984_109496692Not Available623Open in IMG/M
3300013100|Ga0157373_10963468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas635Open in IMG/M
3300013102|Ga0157371_10731502All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas742Open in IMG/M
3300013306|Ga0163162_10530527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1306Open in IMG/M
3300014325|Ga0163163_11540009All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis726Open in IMG/M
3300014325|Ga0163163_12198033All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae611Open in IMG/M
3300014326|Ga0157380_12385369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas594Open in IMG/M
3300014745|Ga0157377_11395737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas552Open in IMG/M
3300015371|Ga0132258_10184920All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas5041Open in IMG/M
3300015371|Ga0132258_12739716Not Available1229Open in IMG/M
3300015371|Ga0132258_13662309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1049Open in IMG/M
3300015374|Ga0132255_102317960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas819Open in IMG/M
3300018465|Ga0190269_10612775All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas739Open in IMG/M
3300018465|Ga0190269_11711275All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas531Open in IMG/M
3300018466|Ga0190268_10328662All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas937Open in IMG/M
3300018469|Ga0190270_12655924All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas563Open in IMG/M
3300018476|Ga0190274_11851968All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas698Open in IMG/M
3300018920|Ga0190273_11010771All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas687Open in IMG/M
3300018920|Ga0190273_11614414All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas580Open in IMG/M
3300022756|Ga0222622_10624638All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis779Open in IMG/M
3300025893|Ga0207682_10329200All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas718Open in IMG/M
3300025901|Ga0207688_10276584All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1022Open in IMG/M
3300025901|Ga0207688_10373136All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas882Open in IMG/M
3300025926|Ga0207659_10100115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2183Open in IMG/M
3300025926|Ga0207659_10578291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas956Open in IMG/M
3300025930|Ga0207701_10905556All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas738Open in IMG/M
3300025931|Ga0207644_10082820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00072374Open in IMG/M
3300025932|Ga0207690_11796241All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas512Open in IMG/M
3300025933|Ga0207706_10044034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3955Open in IMG/M
3300025945|Ga0207679_10248128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1512Open in IMG/M
3300025945|Ga0207679_11782833All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas563Open in IMG/M
3300025960|Ga0207651_10084950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2295Open in IMG/M
3300025981|Ga0207640_10262761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1346Open in IMG/M
3300027876|Ga0209974_10184985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas764Open in IMG/M
3300028379|Ga0268266_10067048All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3105Open in IMG/M
3300028592|Ga0247822_10001055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas16337Open in IMG/M
3300028592|Ga0247822_10095619All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2134Open in IMG/M
3300028597|Ga0247820_10169334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1375Open in IMG/M
3300028608|Ga0247819_10364100All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas826Open in IMG/M
3300031481|Ga0314816_1057464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas525Open in IMG/M
3300031538|Ga0310888_10228630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1035Open in IMG/M
3300031548|Ga0307408_100254678All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1449Open in IMG/M
3300031548|Ga0307408_100405129All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1172Open in IMG/M
3300031548|Ga0307408_100679252All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas923Open in IMG/M
3300031548|Ga0307408_101640366All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas611Open in IMG/M
3300031731|Ga0307405_10098577All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1954Open in IMG/M
3300031731|Ga0307405_10209721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1421Open in IMG/M
3300031731|Ga0307405_10237643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales1347Open in IMG/M
3300031731|Ga0307405_10310533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1200Open in IMG/M
3300031731|Ga0307405_10405722All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1068Open in IMG/M
3300031731|Ga0307405_10461566All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1009Open in IMG/M
3300031731|Ga0307405_11442007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas603Open in IMG/M
3300031824|Ga0307413_10245478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1325Open in IMG/M
3300031824|Ga0307413_10671137All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas857Open in IMG/M
3300031824|Ga0307413_10784625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas799Open in IMG/M
(restricted) 3300031825|Ga0255338_1000034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas591903Open in IMG/M
3300031852|Ga0307410_10112033All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1975Open in IMG/M
3300031852|Ga0307410_10262966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis1346Open in IMG/M
3300031852|Ga0307410_10624132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas901Open in IMG/M
3300031852|Ga0307410_10830929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas787Open in IMG/M
3300031852|Ga0307410_11243288All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas650Open in IMG/M
3300031901|Ga0307406_10314817All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00071208Open in IMG/M
3300031903|Ga0307407_10055263All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2293Open in IMG/M
3300031903|Ga0307407_10770351All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas730Open in IMG/M
3300031903|Ga0307407_11136309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas608Open in IMG/M
3300031908|Ga0310900_10202807All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1394Open in IMG/M
3300031911|Ga0307412_10736669All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas850Open in IMG/M
3300031911|Ga0307412_11132580All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas698Open in IMG/M
3300031911|Ga0307412_11242598All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas granuli668Open in IMG/M
3300031995|Ga0307409_101616059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas676Open in IMG/M
3300032004|Ga0307414_11793383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas572Open in IMG/M
3300032004|Ga0307414_12120791All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas525Open in IMG/M
3300032004|Ga0307414_12277476All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas506Open in IMG/M
3300032005|Ga0307411_10077031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2281Open in IMG/M
3300032005|Ga0307411_10714398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas874Open in IMG/M
3300032005|Ga0307411_11567915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas607Open in IMG/M
3300032005|Ga0307411_11883888All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas556Open in IMG/M
3300032005|Ga0307411_12327149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas503Open in IMG/M
3300032013|Ga0310906_11070221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas582Open in IMG/M
3300032017|Ga0310899_10621707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas542Open in IMG/M
3300032126|Ga0307415_101409271All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis664Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere31.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil6.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.09%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.09%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere6.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.35%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.35%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.35%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest2.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.61%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.74%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.74%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.74%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.74%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.74%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.87%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.87%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.87%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.87%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.87%
SoilEngineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil0.87%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005507Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005873Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301EnvironmentalOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300010227Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2EngineeredOpen in IMG/M
3300011107Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300031481Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031825 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195EnvironmentalOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_006005902088090014SoilMRIALVALATLAGVASAQPAHATTIVVFTNPETLEQRMVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG
INPhiseqgaiiFebDRAFT_10580452343300000364SoilMRIALVALATLAGVASAQPAHATTIVVFTNPETLEQRMVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
JGI10216J12902_11323608613300000956SoilMRLALVALATLAGFAAAQPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
Ga0062593_10002660523300004114SoilMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0062593_10193347623300004114SoilMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN*
Ga0063356_10156000323300004463Arabidopsis Thaliana RhizosphereMRVIVLTALALYGFAAKPASAATIVVFTNPETMERKTIVVDGDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0062592_10201705913300004480SoilMRVAFVALAALASFASPKPAHATTIVVFTNPETLEQRMVVVDRDGPDRVFMCMLPPGEAGCHQVPVRRRS*
Ga0062592_10264663023300004480SoilVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0062594_10003188363300005093SoilMLAQKRGFLMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN*
Ga0070690_10153953913300005330Switchgrass RhizosphereMRLALVALATLAGIAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
Ga0070670_10097896323300005331Switchgrass RhizosphereMRVALVSIVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN*
Ga0070675_10008192933300005354Miscanthus RhizosphereMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN*
Ga0070671_10009884133300005355Switchgrass RhizosphereMRVALVAFAGLAGVAAAQPARAATIVVFTSPETLERRMVVVDENGPDRVFVCMLPPGEAGCHQVAVKRGN*
Ga0070674_10071054313300005356Miscanthus RhizosphereLTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0070673_10004113423300005364Switchgrass RhizosphereMRLAFVALATLAGIAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
Ga0070659_10041635933300005366Corn RhizosphereMRLALVALATLAGFAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
Ga0070663_10209768513300005455Corn RhizosphereMRIAFVALAALASFGAAKPAHATTIVVFTNPETLEQRMVVVDRDGPDRVFMCMLPPGEAGCHQVPVRRRS*
Ga0070662_10001243133300005457Corn RhizosphereMLAQKRGFLMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDESGPDRVFVCMLPPGQAGCHQVQVRRKN*
Ga0074259_1175458513300005507Arabidopsis RhizosphereSSSTVQSRGLIRMLAQKRGFLMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN*
Ga0070665_10004357233300005548Switchgrass RhizosphereMRVALLVICGLAGAVAAAQPANAATIVVLTNPETLEQRTIVVDRNGPDRVFMCMLPPGEAGCHQVAIKRRA*
Ga0068857_10211347423300005577Corn RhizosphereMRVALVSVVGVSGALVAAQPVNAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPVKRRS*
Ga0068859_10263826033300005617Switchgrass RhizosphereMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRR
Ga0068866_1071687423300005718Miscanthus RhizosphereMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLYEDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0068870_1029158023300005840Miscanthus RhizosphereMRVALVSVVGVSGALVAAQPASAAAIVVFTSPETLERKMIVVDQDGPDRLYICMLPPGEAGCHQVPAKRRN*
Ga0075287_104341513300005873Rice Paddy SoilASDAETGKRGQAMRVALISVVGVSGALLTAQPATAATIVVYTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQIPVTRRN*
Ga0081539_1004094333300005985Tabebuia Heterophylla RhizosphereMRVALTSAVFPALLAVAYPASATTIVVFTHPETLEKRMIVVDKDGPDKVILCMLPPGEAGCHQVKVRRAY*
Ga0082029_100324843300006169Termite NestMRVAFILAAGVAGLGFARPVSAATIVVLTNPETFERKTIVVDRAGPDRIFMCMLPPGEAGCHQIPLRRRA*
Ga0082029_121208323300006169Termite NestLAAQRLHSFSIQHPRAIHLAGMQGVWMRVAFLLFAGVAGFGAARPAAAATIVVFTNPETLERKMVVVDREGPDRVFMCMLPPGEAGCHQVAVKRRA*
Ga0082029_132006873300006169Termite NestMRVGVVTAILAIFLAAKPASAATIVVFTNPETMESRTIVVDDDGPDRIFLCMLPPGEAGCHRVQVKRKT*
Ga0075370_1074605333300006353Populus EndosphereMRVALLSICGLSGALAAAQPANAATIVVLTNPETLEQRTIVVDRNGPDRVFMCMLPPGEAGCHQVAVKRRA*
Ga0136219_100006343300010227SoilMARGDPVAGAKGAKMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERRMIVVDQDGPDRLYLCMLPPGEAGCHQVPVKRRN*
Ga0151490_105251723300011107SoilMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPVKRRN*
Ga0150985_11973113523300012212Avena Fatua RhizosphereMRVALVAFATFAGVATAQPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG*
Ga0150985_12141808813300012212Avena Fatua RhizosphereMRVVLVTALTLAACLAATPASATTIVVFTNPETMQSKTVVLNGEGPDRVFMCMLPPGEAGCHQVKVRPRS*
Ga0150984_10949669223300012469Avena Fatua RhizosphereTDLRSKRGYRMRVVLVTALTLAACLAATPASATTIVVFTNPETMQSKTVVLNGEGPYRVFMCMLPPGEAGCHQVKVRPRS*
Ga0157373_1096346813300013100Corn RhizosphereKGAKMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN*
Ga0157371_1073150223300013102Corn RhizosphereMAAGDPLAGAKGAKMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYICMLPPGEAGCHQVPAKRRN*
Ga0163162_1053052733300013306Switchgrass RhizosphereMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKV
Ga0163163_1154000923300014325Switchgrass RhizosphereMRLALVALATLAGIAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGE
Ga0163163_1219803333300014325Switchgrass RhizosphereMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQV
Ga0157380_1238536923300014326Switchgrass RhizosphereMRVVLVSALTLAGCLTATPASAATIVVFTNPQTMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVRRRS*
Ga0157377_1139573713300014745Miscanthus RhizosphereMRVALVSVVGASGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDR
Ga0132258_1018492083300015371Arabidopsis RhizosphereMRVVLLTAVGIASSLAAPSAHAATILVFTNPETMERKMVVVDDDGPDRVFMCMLPPGEAGCHQVRFKRK*
Ga0132258_1273971623300015371Arabidopsis RhizosphereMRAALIAFATLAGAAIASPAYAATIVVLTNPETLEQRTILVDRDGPDRVFMCMLPPGEAGCHQVPVRRRS*
Ga0132258_1366230913300015371Arabidopsis RhizosphereMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEA
Ga0132255_10231796033300015374Arabidopsis RhizosphereMRVALLSICGLAGALAAAQPANAATIVVLTNPETLEQRTIVVDRNGPDRVFM
Ga0190269_1061277523300018465SoilMRFAFLVVAGLSGAFAARPASAATIVVFTHPETFEQKMVVVDREGPDRLFMCMLPPGEAGCHQVPFKRRA
Ga0190269_1171127513300018465SoilGVASFGAARPAAAATIVVFTNPETLERKMVVVDREGPDRVFMCMLPPGEAGCHQVAVKRR
Ga0190268_1032866213300018466SoilMRVAFLCAAGLAGFGATQPAAAATIVVLTNPETLQRKTIVVDRQGPDRIFMCMLPPGEAGCHQVPAKRRG
Ga0190270_1265592413300018469SoilKKGVRMRVAFLCAAGLAGFGATQPAAAATIVVLTNPETLQRKTIVVDRQGPDRIFMCMLPPGEAGCHQVPVKRRA
Ga0190274_1185196823300018476SoilMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0190273_1101077113300018920SoilIHSAGGKGVWMRVAFLLFAGVASFGAARPAAAATIVVFTNPETLERKMVVVDHEGPDRVFMCMLPPGEAGCHQVAVKRGA
Ga0190273_1161441423300018920SoilMRVAFLLVAGLAGFGAARPATAATIVVLTNPQTLERKTIVVDSDGPDRVFMCMLPPGEAGCHQVQVKRRG
Ga0222622_1062463833300022756Groundwater SedimentMRVAFLCAAGLAGLGAAQPAAAATIVVLTNPETLERKAIVVDRDGPDRIFLCMLPPGEAGCHQVPVKRRA
Ga0207682_1032920023300025893Miscanthus RhizosphereMRLALVALATLAGIAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG
Ga0207688_1027658413300025901Corn, Switchgrass And Miscanthus RhizosphereMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVRRRS
Ga0207688_1037313623300025901Corn, Switchgrass And Miscanthus RhizosphereMARGDPVAGAKGAKMRVALVSVFGVSGALIAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN
Ga0207659_1010011533300025926Miscanthus RhizosphereMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN
Ga0207659_1057829123300025926Miscanthus RhizosphereMAAGDPVAGAKGAKMRVALVSIVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRVYLCMLPPGEAGCHQVPAKRRN
Ga0207701_1090555623300025930Corn, Switchgrass And Miscanthus RhizosphereMLAQKRGFLMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN
Ga0207644_1008282033300025931Switchgrass RhizosphereMRVALVAFAGLAGVAAAQPARAATIVVFTSPETLERRMVVVDENGPDRVFVCMLPPGEAGCHQVAVKRGN
Ga0207690_1179624123300025932Corn RhizosphereVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRR
Ga0207706_1004403433300025933Corn RhizosphereMRVVLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDESGPDRVFVCMLPPGQAGCHQVQVRRKN
Ga0207679_1024812843300025945Corn RhizosphereLVTATLASFLAAKPASAATILVFTNPETMERKMVVVDEGGPDRVFVCMLPPGQAGCHQVQVRRKN
Ga0207679_1178283323300025945Corn RhizosphereMRVALIAFATLAGVAAAQPAHATTIVVYTNPETLEQRMVVLDRDGPDRVFMCMLPPGEAGCHQVPVKRRG
Ga0207651_1008495033300025960Switchgrass RhizosphereMRLAFVALATLAGIAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG
Ga0207640_1026276133300025981Corn RhizosphereMARGDPVAGAKGAKMRVALVSIVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0209974_1018498523300027876Arabidopsis Thaliana RhizosphereAKMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0268266_1006704833300028379Switchgrass RhizosphereMRVALLVICGLAGAVAAAQPANAATIVVLTNPETLEQRTIVVDRNGPDRVFMCMLPPGEAGCHQVAIKRRA
Ga0247822_10001055133300028592SoilMRVALLMAAGLASAGVARPASAATIVVLTNPETMERKTIVVERDGPDRIFMCMLPPGEAGCHQVPVRRRG
Ga0247822_1009561953300028592SoilMRVALVSVVGVSGALVAAQPASAAAIVVFTSPETLERKMIVVDQDGPDRLYICMLPPGEAGCHQVPAKRRN
Ga0247820_1016933413300028597SoilVGEQGVLMRVALLMAAGLASAGVARPASAATIVVLTNPETMERKTIVVERDGPDRIFMCMLPPGEAGCHQVPVRRRG
Ga0247819_1036410013300028608SoilVVSVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYICMLPPGEAGCHQVPAKRRN
Ga0314816_105746423300031481SoilMRLALVALATLAGFAAAEPAHAATIVVFTNPETLEQRTVVVDRDGPDRVFMCMLPPGEAGCHQVPVKRRG
Ga0310888_1022863013300031538SoilMRVVLVSALTLAGCLTATPASAATIVVFTNPETMQSKAVVLNEDGPDRVFMCMLPPGEAGCHQVKVR
Ga0307408_10025467843300031548RhizosphereVVVLTALALSGFAAAPASAATIVVFTNPETMERKTVVVDGDGPDRVFMCMLPPGQAGCHQVKVRRRS
Ga0307408_10040512923300031548RhizosphereMRVAFLLVAGLAGFGAARPAAAATIVVLTNPQTLERKTIVVDRDGPDRVFMCMLPPGEAGCHQVQVKRKA
Ga0307408_10067925223300031548RhizosphereMRVVLVMAFGLGLLLAAAPASAATIVVFTNPETMESRTVVVDQDGPDRLFMCMLPPGEAGCQQVKFRRRR
Ga0307408_10164036613300031548RhizosphereGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307405_1009857743300031731RhizosphereMRVVVLTALALSGFAAAPASAATIVVFTNPETMERKTVVVDGDGPDRVFMCMLPPGQAGCHQVKVRRRS
Ga0307405_1020972113300031731RhizosphereMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPG
Ga0307405_1023764333300031731RhizosphereMRVVLVTAFGLGMLLAAAPASAATIVVFTNPETMESRTVVVDQDGPDRLFMCMLPPGEAGCQQVKFRRRR
Ga0307405_1031053323300031731RhizosphereMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307405_1040572223300031731RhizosphereMRVAFLLVAGLASFGAARPAAAATIVVLTNPETLERKTIVVDRDGPDRIFMCMLPPGEAGCHQVQVKRKA
Ga0307405_1046156623300031731RhizosphereMRVALVSVVGVSGALVVAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307405_1144200723300031731RhizosphereMRVALISVVGVSGAILTAQPATAATIVVYTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQIPVTRRN
Ga0307413_1024547833300031824RhizosphereMRVAFLFVAGLATFGVASPAAAATVVVFTNPETMERKAIIVDRNGPDRLFMCMLPPGEAGCHKVPLRRKD
Ga0307413_1067113723300031824RhizosphereMRVALVSVVGVSGALVAAQPASAATIVVFTSPETLERKMIVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRS
Ga0307413_1078462523300031824RhizosphereMRVAFLLVAGLAGFGAPRPASAATIVVLTNPQTLERKTIVVDRYGPDRVFMCMLPPGEAGCHQVQVKRRG
(restricted) Ga0255338_10000345993300031825Sandy SoilMRVALVSVVGVSGALVAAQPASAATVVVFTSPETLERRMIVVDQDGPDRLFLCMLPPGEAGCHQIPVTRRN
Ga0307410_1011203323300031852RhizosphereMRVVLVTAFGLGLLLAAAPASAATIVVFTNPETMESRTVVVDQDGPDRLFMCMLPPGEAGCQQVKFRRRR
Ga0307410_1026296623300031852RhizosphereMRVAFLLFAGMVSFGAARPAAAATIVVFTNPETLERKMVVVDREGPDRLFMCMLPPGEAGCHQVAVKRRA
Ga0307410_1062413213300031852RhizosphereMRVALVSVVGVSGALVVAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPG
Ga0307410_1083092923300031852RhizosphereALVAAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307410_1124328823300031852RhizosphereMRVVVLTALALYGFAGTPASAATIVVFTNPETMERKTVVLDQEGPDRVFMCMLPPGEAGCHQVKVRRRN
Ga0307406_1031481733300031901RhizosphereSMRVALVSVVGVSGALVVAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307407_1005526343300031903RhizosphereMRVVLVTAFGLGLLLAAAPASAATIVVFTNPETMESRAVVVDQDGPDRLFMCMLPPGEAGCQQVKVRRRR
Ga0307407_1077035123300031903RhizosphereVGVSGALVVAQPASAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPAKRRN
Ga0307407_1113630923300031903RhizosphereMRVAFLFVAGLATFGVASPAAAATVVVFTNPETMERKAIIVDRNGPDRLFMCMLPPGEAGCHQVPLRRKD
Ga0310900_1020280723300031908SoilMRVVLVAALSFAACLAPTPAGAATIVVFTNPETMQSKAIVLSEEGPDRVFMCMLPPGEAGCHQVKLKRRS
Ga0307412_1073666923300031911RhizosphereGLATFGVASPVVAATVVVFTNPETMERKAIIVDRNGPDRLFMCMLPPGEAGCHQVPLRRK
Ga0307412_1113258023300031911RhizosphereMRVALISVVGVSGALLTAQPATAATIVVYTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQIPVTRRN
Ga0307412_1124259833300031911RhizosphereMGWRSKRGRRMRVVLVTAFGLGLLLAAAPASAATIVVFTNPETMESRTVVVDQDGPDRLF
Ga0307409_10161605923300031995RhizosphereMRVAFLLVAGLAGFGAARPAAAATIVVLTNPQTLERKTIVVDRDGPDRVFMCMLPPGEAGCHQVQVKRRG
Ga0307414_1179338323300032004RhizosphereTALGFGLLLAAAPASAATIVVFTNPETMESRTVIVDQDGPDRLFMCMLPPGEAGCQQVKVRRRR
Ga0307414_1212079123300032004RhizosphereMRVPVLIGLSLACLAAAEPATAATIVVFTNPETLERRMIVVDRDGPDRMFMCMLPPGEAGCHQVKLQRG
Ga0307414_1227747613300032004RhizosphereMRVAFLLFAGVASFGAARPAAAATIIVFTNPETLERKMVVVDREGPDRLFMCMLPPGEAGCHQVAVKRRA
Ga0307411_1007703153300032005RhizosphereMRVVLVTALGFGLLLAAAPASAATIVVFTNPETMESRTVIVDQDGPDRLFMCMLPPGEAGCQQVKVRRRR
Ga0307411_1071439813300032005RhizosphereLVAGLAGFGAARPAAAATIVVLTNPQTLERKTIVVDRDGPDRVFMCMLPPGEAGCHQVQVKRKT
Ga0307411_1156791513300032005RhizosphereRMRVVLVSITGFAGALFAAQPAGAATIVVFTSPETLERRMVVVDQDGPDRLYLCMLPPGEAGCHQVPVKRRS
Ga0307411_1188388813300032005RhizosphereVAGLAGFGAARPATAATIVVLTNPQTLERKTIVVDRYGPDRVFMCMLPPGEAGCHQVQVKRRG
Ga0307411_1232714913300032005RhizosphereMRVVVRTALALSGFAAAPASAATIVVFTNPETMERKTVVVDGDGPDRVFMCMLPPGQAGCHQVKVRRRS
Ga0310906_1107022123300032013SoilMRVVLVAALSFAACLAPTPAGAATIVVFTNPETMQSKAVVLSEEGPDRVFMCMLPPGEAGCHQVKLKRRS
Ga0310899_1062170723300032017SoilMRVVLVAALSFAACLAPTPAGAATIVVFTNPETMQSKAVVPSEEGPDRVFMCMLPPGEAGCHQVKVRRRS
Ga0307415_10140927113300032126RhizosphereMRVAFLLVAGLAGLGAAPPAAAATIVVLTNPQTLERKTIVVDRDGPDRVFMCMLPPGEAGCHQVQVKR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.