Metagenome / Metatranscriptome Family F080602

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080602
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	51 residues
Representative Sequence	GLWKLAMGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Number of Associated Samples	107
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.48 %
% of genes near scaffold ends (potentially truncated)	96.52 %
% of genes from short scaffolds (< 2000 bps)	88.70 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (12.174 % of family members)
Environment Ontology (ENVO)	Unclassified (34.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.217 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.76% β-sheet: 0.00% Coil/Unstructured: 43.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13365	Trypsin_2	20.87
PF01797	Y1_Tnp	4.35
PF01029	NusB	4.35
PF00072	Response_reg	2.61
PF01471	PG_binding_1	2.61
PF07969	Amidohydro_3	2.61
PF13437	HlyD_3	0.87
PF01875	Memo	0.87
PF00216	Bac_DNA_binding	0.87
PF09286	Pro-kuma_activ	0.87
PF01546	Peptidase_M20	0.87
PF13964	Kelch_6	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	4.35
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.87
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.87
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	87.83 %
Unclassified	root	N/A	7.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	46.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.17 %
Unclassified	root	N/A	7.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.96 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.17 %
Unclassified	root	N/A	7.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.30 %
Unclassified	root	N/A	7.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.96 %
Unclassified	root	N/A	7.83 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.74 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.96 %
Unclassified	root	N/A	7.83 %
Magnetospirillum caucaseum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum caucaseum	0.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10508829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300001661\|JGI12053J15887_10581790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300002245\|JGIcombinedJ26739_100508606	All Organisms → cellular organisms → Bacteria → Acidobacteria	1082	Open in IMG/M
3300002245\|JGIcombinedJ26739_100975996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300004082\|Ga0062384_100712634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300004092\|Ga0062389_102822976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300004152\|Ga0062386_101820014	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300004635\|Ga0062388_101398839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300005468\|Ga0070707_100048609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4063	Open in IMG/M
3300005764\|Ga0066903_101139482	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300005938\|Ga0066795_10132852	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300005995\|Ga0066790_10136019	Not Available	1053	Open in IMG/M
3300006050\|Ga0075028_101015422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300006052\|Ga0075029_101271359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300006059\|Ga0075017_101486058	Not Available	534	Open in IMG/M
3300006059\|Ga0075017_101595167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300006086\|Ga0075019_10106331	All Organisms → cellular organisms → Bacteria → Acidobacteria	1616	Open in IMG/M
3300006102\|Ga0075015_100223235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1011	Open in IMG/M
3300009519\|Ga0116108_1234060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300009624\|Ga0116105_1096478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300009628\|Ga0116125_1097221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300009644\|Ga0116121_1102741	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300010341\|Ga0074045_10686812	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300010379\|Ga0136449_104463787	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300012917\|Ga0137395_10393792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	991	Open in IMG/M
3300012924\|Ga0137413_10103801	All Organisms → cellular organisms → Bacteria → Acidobacteria	1778	Open in IMG/M
3300012929\|Ga0137404_11019733	Not Available	757	Open in IMG/M
3300014158\|Ga0181521_10530877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300014168\|Ga0181534_10768876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300014169\|Ga0181531_10292660	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300014201\|Ga0181537_10626249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300014498\|Ga0182019_10805794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300014654\|Ga0181525_10558236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300015264\|Ga0137403_10670754	All Organisms → cellular organisms → Bacteria → Acidobacteria	898	Open in IMG/M
3300017929\|Ga0187849_1261630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300017933\|Ga0187801_10497158	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300017934\|Ga0187803_10266445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300017941\|Ga0187850_10352939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300017943\|Ga0187819_10210205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1146	Open in IMG/M
3300017943\|Ga0187819_10765497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300017972\|Ga0187781_10733484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300017995\|Ga0187816_10249593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300018008\|Ga0187888_1169445	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300018012\|Ga0187810_10380831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300018017\|Ga0187872_10247263	Not Available	800	Open in IMG/M
3300018026\|Ga0187857_10159328	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300018026\|Ga0187857_10233341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300018033\|Ga0187867_10321212	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300018034\|Ga0187863_10489657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300018035\|Ga0187875_10651201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300018037\|Ga0187883_10356497	Not Available	748	Open in IMG/M
3300018038\|Ga0187855_10237032	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300018042\|Ga0187871_10800155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300018046\|Ga0187851_10373357	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300018085\|Ga0187772_10706358	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300018085\|Ga0187772_11081342	Not Available	588	Open in IMG/M
3300018086\|Ga0187769_10091568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2174	Open in IMG/M
3300018090\|Ga0187770_10176038	All Organisms → cellular organisms → Bacteria → Acidobacteria	1640	Open in IMG/M
3300018090\|Ga0187770_10421829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1050	Open in IMG/M
3300019278\|Ga0187800_1350038	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300019785\|Ga0182022_1361114	All Organisms → cellular organisms → Bacteria → Acidobacteria	1208	Open in IMG/M
3300019787\|Ga0182031_1299037	All Organisms → cellular organisms → Bacteria → Acidobacteria	1992	Open in IMG/M
3300019888\|Ga0193751_1047229	All Organisms → cellular organisms → Bacteria → Acidobacteria	1879	Open in IMG/M
3300021407\|Ga0210383_11517045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300021477\|Ga0210398_10735310	All Organisms → cellular organisms → Bacteria → Acidobacteria	797	Open in IMG/M
3300022518\|Ga0224548_1016515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300022521\|Ga0224541_1014238	All Organisms → cellular organisms → Bacteria → Acidobacteria	857	Open in IMG/M
3300022521\|Ga0224541_1027672	Not Available	610	Open in IMG/M
3300022873\|Ga0224550_1062017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300024041\|Ga0224539_1004006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300025406\|Ga0208035_1020120	All Organisms → cellular organisms → Bacteria → Acidobacteria	1078	Open in IMG/M
3300025604\|Ga0207930_1096091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300026340\|Ga0257162_1052099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300026358\|Ga0257166_1021926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300026480\|Ga0257177_1031013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300027587\|Ga0209220_1019422	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1815	Open in IMG/M
3300027669\|Ga0208981_1098870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300027729\|Ga0209248_10182760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300027745\|Ga0209908_10080609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	776	Open in IMG/M
3300027854\|Ga0209517_10175021	All Organisms → cellular organisms → Bacteria → Acidobacteria	1348	Open in IMG/M
3300027898\|Ga0209067_10071355	All Organisms → cellular organisms → Bacteria → Acidobacteria	1781	Open in IMG/M
3300028665\|Ga0302160_10122396	Not Available	588	Open in IMG/M
3300028779\|Ga0302266_10028620	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2734	Open in IMG/M
3300028792\|Ga0307504_10118056	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300028798\|Ga0302222_10068179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum caucaseum	1431	Open in IMG/M
3300028866\|Ga0302278_10023161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4481	Open in IMG/M
3300028871\|Ga0302230_10238846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300029883\|Ga0311327_10021128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5518	Open in IMG/M
3300029918\|Ga0302143_1000053	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18790	Open in IMG/M
3300029939\|Ga0311328_10040787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4222	Open in IMG/M
3300029944\|Ga0311352_11406116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300029953\|Ga0311343_11317244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300029955\|Ga0311342_10740929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300029956\|Ga0302150_10016455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2958	Open in IMG/M
3300029981\|Ga0302293_10150898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300029986\|Ga0302188_10239542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300029987\|Ga0311334_10095015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2190	Open in IMG/M
3300030001\|Ga0302272_1097093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300030004\|Ga0302186_10129767	All Organisms → cellular organisms → Bacteria → Acidobacteria	908	Open in IMG/M
3300030014\|Ga0302175_10077690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300030049\|Ga0302191_10344302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300030688\|Ga0311345_10079055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3889	Open in IMG/M
3300031028\|Ga0302180_10019819	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4370	Open in IMG/M
3300031259\|Ga0302187_10442562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300031595\|Ga0265313_10292150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300031720\|Ga0307469_10584924	All Organisms → cellular organisms → Bacteria → Acidobacteria	995	Open in IMG/M
3300032160\|Ga0311301_11918315	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300032805\|Ga0335078_10530938	All Organisms → cellular organisms → Bacteria → Acidobacteria	1503	Open in IMG/M
3300032805\|Ga0335078_11133815	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300032828\|Ga0335080_11823866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300032892\|Ga0335081_10036684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7822	Open in IMG/M
3300032955\|Ga0335076_10588793	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300033158\|Ga0335077_10015743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9455	Open in IMG/M
3300033405\|Ga0326727_10315406	Not Available	1522	Open in IMG/M
3300033829\|Ga0334854_079843	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.13%
Host-Associated	Host-Associated	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.48%
Aquatic	Environmental → Aquatic	35.65%
Plants	Host-Associated → Plants	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.26%
Freshwater	Environmental → Aquatic → Freshwater	29.57%
Peat	Environmental → Terrestrial → Peat	25.22%
Sediment	Environmental → Aquatic → Sediment	6.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	25.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.91%
Loam	Environmental → Terrestrial → Soil → Loam	6.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	25.22%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.09%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.22%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.35%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	12.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.30%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.22%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.22%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.22%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	5.22%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.35%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.74%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.87%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300024041	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029981	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_2	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030001	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2	Environmental	Open in IMG/M
3300030004	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1	Environmental	Open in IMG/M
3300030014	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_105088291	3300001593	Forest Soil	LPSVTFLIVFPQIAYGRALGIVVVLLCALVGSLGLWKLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL*
JGI12053J15887_105817902	3300001661	Forest Soil	ALGAVQKPFGILNVLSFGALFVLLIIASYTGLFLALITVKI*
JGIcombinedJ26739_1005086061	3300002245	Forest Soil	VGLWKLALGAVEKPWGIFNVLSFSALLILLVIAGYTGLFLALITLRI*
JGIcombinedJ26739_1009759961	3300002245	Forest Soil	GFGLWKLALGVVQKPWGIFNVLCLGALVVVVVIAAYTGLFLALMTVGI*
Ga0062384_1007126341	3300004082	Bog Forest Soil	VVPTCGLASGFGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALLTLKI*
Ga0062389_1028229761	3300004092	Bog Forest Soil	LWKLALGAVQKPLGLFNVLSFATLLVLLVIAGYTGLFLALMTLNP*
Ga0062386_1018200141	3300004152	Bog Forest Soil	GSFGLWKLATGAVQKPWGIFNVLSFGALLVLLVTAAYTGLFLALMTLKL*
Ga0062388_1013988392	3300004635	Bog Forest Soil	GLFVVPTCGLASGFGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALLTLKI
Ga0070707_1000486092	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LWKLALGAVQKPWGLFNVLSVGALLVVLVIAGYTGVFLALMTLKL*
Ga0066903_1011394822	3300005764	Tropical Forest Soil	MGAVQRPFGILNALSAGALFVLLVIAGYTGLFLALVT
Ga0066795_101328523	3300005938	Soil	PWGIFNVLSFGALFVLLVIASYTGLFLALMTLKL*
Ga0066790_101360192	3300005995	Soil	LAMGAVEKPWGIFNVLSFGALFVLLVIAGYTGLFLALITSKL*
Ga0075028_1010154221	3300006050	Watersheds	QKPWGIFNVLSFGALIVLLIVASYTGLFLAMITVRL*
Ga0075029_1012713592	3300006052	Watersheds	LVGSFGLWKLALGAVQKPWGIFNMLNVGALMVLVVIAAYTGVFLALLTLKL*
Ga0075017_1014860581	3300006059	Watersheds	ALVGSVGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL*
Ga0075017_1015951671	3300006059	Watersheds	LSSFFGLWKLAMGAVEKPWGIFNVLNFGALFVLLVIAAYTGLFLALMTLKL*
Ga0075019_101063312	3300006086	Watersheds	PHGRFVGFLLLPICALLGSFGLWQIALGTVQKPWGIFNILNVTALLVLLVIAGYTGVFLALMTMKL*
Ga0075015_1002232352	3300006102	Watersheds	AFPSIPHGRFVGFLLLPICALLGSFGLWQIALGTVQKPWGIFNILNVTALLVLLVIAGYTGVFLALMTMKL*
Ga0116108_12340602	3300009519	Peatland	KLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL*
Ga0116105_10964781	3300009624	Peatland	LVSSFGLWKLALGAVQKPWGIFNVLSFGALIVLLVIAGYTGLFLALMTLKL*
Ga0116125_10972212	3300009628	Peatland	VPLCALIGSFGLWKLALGAVEKPWGIFNILNVTALMVLIVIAAYTGLFLALLTLKL*
Ga0116121_11027411	3300009644	Peatland	GFGLWKLAWGAVQKPWGIFNVLNVGALFVLLVIAAYTGLFLALMTLKL*
Ga0074045_106868121	3300010341	Bog Forest Soil	LALGAVQRPWGIFNVLSFGALFVLLVIAAYTGLFLALMTLKL*
Ga0136449_1044637871	3300010379	Peatlands Soil	SFGLWKLALGAVEKPWEIFNVLSFAALLVLLVIASCTGLFLALMTLKL*
Ga0137395_103937921	3300012917	Vadose Zone Soil	KPWGLFNVLSVGALLVVLVIAGYTGVFLALMTLKL*
Ga0137413_101038011	3300012924	Vadose Zone Soil	FGLWKLAMGAVQRPFGILNALSFGALLVLLIIAGYTGIFLAIITARF*
Ga0137404_110197331	3300012929	Vadose Zone Soil	KLAMGAVQRPFGILNALSFGALIVLLIIAGYTGIFLAIITARF*
Ga0181521_105308771	3300014158	Bog	LAGSFGLWRLAMGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL*
Ga0181534_107688762	3300014168	Bog	GFLVVPACALTSCFGLWKLANGAVQRPWGIFNVLSFGALLVLLVIAGYTGVFLALMTLKI
Ga0181531_102926601	3300014169	Bog	GAVQKPWGIFNVLSFGTLLVLLVIAAYTGLFLALMTLKL*
Ga0181537_106262491	3300014201	Bog	HGRVIGMLVVPACALIGCFGLWKLAIGAVQKPWGLFNVLSFGALLVLLVIAGYTGVFLAIMTLKL*
Ga0182019_108057942	3300014498	Fen	WKLALGAVEKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL*
Ga0181525_105582362	3300014654	Bog	ACALIGCFGLWKLAIGAVQKPWGLFNVLSFGALLVLLVIAGYTGVFLAIMTLKL*
Ga0137403_106707542	3300015264	Vadose Zone Soil	KPWGIFNVLSFGMLLVVLVIAGYTGAFLALMTMTLKL*
Ga0187849_12616301	3300017929	Peatland	QKPWGIFNLLNFGALLVLLAIAGYTGLFLALMTLKL
Ga0187801_104971582	3300017933	Freshwater Sediment	LGAVQKPWGIFNVLNVGALLVLLVIAGYTGLFLALMTLKL
Ga0187803_102664451	3300017934	Freshwater Sediment	GLWKLALGAVQKPWGIFNVLSFGALLVLLIIAGYTGLFLALVTVRL
Ga0187850_103529392	3300017941	Peatland	GLWQLALGVVAKPWGILNILNVTGLFVLLVIAGYTGVFLALLTLKL
Ga0187819_102102052	3300017943	Freshwater Sediment	VVTYLIAFPSIPHGRFVGFLLLPICALAGSLGLFRLALGAVEKPWGIFNILNVAALLVLLVIAAYTGIFLALMTLKL
Ga0187819_107654971	3300017943	Freshwater Sediment	VQKPWGIFNVLSFGALLVLLIIASYTGLFLALITVRL
Ga0187781_107334841	3300017972	Tropical Peatland	GAVQKPWGIFNVLSVGTLIVLLVIAGYTGVFLALLTLKI
Ga0187816_102495932	3300017995	Freshwater Sediment	RHGRAIGLFVLPACALAGSFGLWKLATGAVQKPWGIFNVLSFGALLVLLVIAGYTGVFLALMTLKL
Ga0187888_11694452	3300018008	Peatland	FGLWKLATGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187810_103808312	3300018012	Freshwater Sediment	GLWKLATGAVRKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187872_102472632	3300018017	Peatland	GLWKLATGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187857_101593282	3300018026	Peatland	KPWGVFNVLSFGALMVLLVIAGYTGLFLALLTLKL
Ga0187857_102333411	3300018026	Peatland	CALAGSVGLWKLATGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187867_103212121	3300018033	Peatland	LWKLALGAVEKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187863_104896571	3300018034	Peatland	KPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0187875_106512012	3300018035	Peatland	AVQKPWGIFNVLSFGALLVLLVIAAYTGLFLALMTLKL
Ga0187883_103564971	3300018037	Peatland	LGVVAKPWGIFNILNVTGLFVLLVIAGYTGVFLALLTLKL
Ga0187855_102370322	3300018038	Peatland	HGRAVGFVVVPICALASGFGLWKLALGAVQKPWGIYNVLSFGALMVLLVIAGYTGLFLALLTVKL
Ga0187871_108001552	3300018042	Peatland	GLWKLALGAVQKPWGLYNALSFGALIVLLVIAGYTGLFLALMTLKL
Ga0187851_103733573	3300018046	Peatland	LALGAVQKPWGIFNVLSFGALIVLLVIAAYTGLFLALMTLKL
Ga0187772_107063581	3300018085	Tropical Peatland	QKPWGIFNVLNVGALLVLLVIAGYTGLFLALMTLKL
Ga0187772_110813421	3300018085	Tropical Peatland	GAVQKPWGIFNVLNVGGLLVLLVIAGYTGLFLALLTLKL
Ga0187769_100915681	3300018086	Tropical Peatland	RVAHGRLIGFIVVLVCAVLGSLGLWKLALGAVQKPWGIFNVLNAGALFVLLVIAGYTGLFLALMTLNL
Ga0187770_101760382	3300018090	Tropical Peatland	GLWKLVLGAVQKPWGIFNVLNVGALLVLLVIAGYTGLFLALMTLKL
Ga0187770_104218293	3300018090	Tropical Peatland	AVMFLIVFPRVAYGRLIGSLVVLGCALVGSFGLWKLSVGAVQKPWGIFNVLNVGVLLVLLVIAGYTGLFLALITLRL
Ga0187800_13500381	3300019278	Peatland	VQKPWGIFNVLNVGALLVLLVIAGYTGLFLALMTLKL
Ga0182022_13611142	3300019785	Fen	AVTGVRLAGSIGLWKLAIGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALITLKL
Ga0182031_12990373	3300019787	Bog	VAHGRVLGAVVVPACALTSCFGLWKLALGAVQKPWGIFNVLSFGTILVLLVVAGYTGCFW
Ga0193751_10472291	3300019888	Soil	MGGAIGLLLLPACVLVGGFGLWKLALGAVQKPWGIFNVLSFGAVLVLVVIAGYTGLFLALITLKI
Ga0210383_115170452	3300021407	Soil	RVPYGRIVGAFVVPLCAVAGSFGLWKLALGAVQKPLGLFNVLSFATLLVLLVIAGYTGLFLALMTLEP
Ga0210398_107353102	3300021477	Soil	KLATGVVEKPWGIFNVLNFGTLMILLVIAGYTGWFLALMTLKL
Ga0224548_10165151	3300022518	Soil	SSIGLWKLAFGAVQKPWGLFNVLSFGALLVLLVIAGYTGLFLALVTLRI
Ga0224541_10142382	3300022521	Soil	KLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL
Ga0224541_10276721	3300022521	Soil	MGVVQKPWGIFNVLCFGSLLILVIIASYTGLFLALMTLKL
Ga0224550_10620172	3300022873	Soil	IVFPQIAYGRALGIVVVLLCALVGSLGLWKLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL
Ga0224539_10040061	3300024041	Soil	ISAVQRPFGILNALSVGALMVVLIIATYTGLFLAFIAIKL
Ga0208035_10201202	3300025406	Peatland	PLCALIGSFGMWKLALGAVEKPWGIFNILNVTALMVLIVIAAYTGLFLALLTLKL
Ga0207930_10960911	3300025604	Arctic Peat Soil	GLWKLAMGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0257162_10520991	3300026340	Soil	GAVQKPFNILNVLSVGALLVLLIIAGYTGLFLALVTAKL
Ga0257166_10219261	3300026358	Soil	PACALAGSFGLWKLALGAVQKPWGLFNVLSVGALLVVLVIAGYTGVFLALMTLKL
Ga0257177_10310131	3300026480	Soil	ALGAVQKPWGLFNVLSVGALLVVLVIAGYTGVFLALMTLKL
Ga0209220_10194221	3300027587	Forest Soil	AHGRMIGLFVLPPCLFAGCVGLWKLALGAVEKPWGIFNVLSFSALLILLVIAGYTGLFLALITFRI
Ga0208981_10988702	3300027669	Forest Soil	AMGAVQRPFGILNALSFGALILLLIIAGYTGIFLAIITARF
Ga0209248_101827602	3300027729	Bog Forest Soil	IAGGFGLWKLALGAVQKPWGILNVLSFGALVVVLFIAGYTGLFLALITLKL
Ga0209908_100806093	3300027745	Thawing Permafrost	LFLPSVTFLIVFPQIAYGRALGIVVVLLCALVGSLGLWKLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL
Ga0209517_101750212	3300027854	Peatlands Soil	ALAGSVGLWKLATGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLKL
Ga0209067_100713551	3300027898	Watersheds	PHGRFVGFLLLPICALLGSFGLWQIALGTVQKPWGIFNILNVTALLVLLVIAGYTGVFLALMTMKL
Ga0302160_101223962	3300028665	Fen	RVIGGVVVTACALAGSVGLWKLALGAVERPWGIFNVVNMVALFVLLVIAGYTGLFLALMTLKL
Ga0302266_100286203	3300028779	Bog	LALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0307504_101180562	3300028792	Soil	GAVQRPFGILSALSLGAMVVLLIMAAYTGLFLALIVANG
Ga0302222_100681791	3300028798	Palsa	LLFLPSVTFLIVFPQIAYGRALGIVVVLLCALVGSLGLWKLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL
Ga0302278_100231614	3300028866	Bog	VQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0302230_102388461	3300028871	Palsa	KLALGAVQKPWGLFNVLSFGALLVLLVIAGYTGVFLAIMTLKL
Ga0311327_100211281	3300029883	Bog	FLIVFPQVAYGRAIGLIIVPLSALTSCFGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0302143_100005318	3300029918	Bog	VVVPACALTSCFGLWKLALGAVQKPWGIFNVLSFGTILVLLVIAGYTGLFLALMTLKL
Ga0311328_100407871	3300029939	Bog	PATMFLIVFPQVAYGRAIGLIIVPLSALTSCFGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0311352_114061162	3300029944	Palsa	VCALASSFGLWKVAMGAVQKPWGIFNVLSFGALLVLLVIAGYTGLFLALMTLRL
Ga0311343_113172442	3300029953	Bog	CALASSFGLWKLALGAVEKPWGIFNVLSFGALMVLLVIAGYTGLFLALMTVNL
Ga0311342_107409292	3300029955	Bog	LPAVMFLIVFPQVRFGRALGFFVVPACALTSCFGLSKLANGAVQRPWGIFNVLSFGALLVLLVIAGYTGVFLALMTLKI
Ga0302150_100164554	3300029956	Bog	VVVPACALTSCFGLWKLALGAVQKPWGIFNVLSFGTILVLLVVAGYTGLFLALMTLKL
Ga0302293_101508981	3300029981	Fen	AVTFLIVFPRVTHGRLIGGVVVTACALAGSFGLWKLALGAVEKPWGIFNVLNMVALFILLVIAGYTGVFLALMTLKL
Ga0302188_102395421	3300029986	Bog	IVFPQVRFGRGLGFLVVPACALTSCFGLWKLANGAVQRPWGIFNVLSFGALLVLLVIAGYTGVFLALMTLKI
Ga0311334_100950151	3300029987	Fen	ASSVGLWKLAFGAVQRPFGILNALSFAALFVLMVIAGYTGLFLALITVKF
Ga0302272_10970932	3300030001	Bog	TFLIVFPRVTHGRLIGGVVVTACALAGSFGLWKLALGAVEKPWGIFNVLNMVALFILLVIAGYTGVFLALMTLKL
Ga0302186_101297671	3300030004	Bog	ALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0302175_100776901	3300030014	Fen	VVVTACALAGSFGLWKLALGAVEKPWGIFNVLNMVALFILLVIAGYTGVFLALMTLKL
Ga0302191_103443021	3300030049	Bog	LWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0311345_100790551	3300030688	Bog	ATMFLIVFPQVAYGRAIGLIIVPLSALTSCFGLWKLALGAVQKPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0302180_100198191	3300031028	Palsa	PSVTFLIVFPQIAYGRALGIVVVLLCALVGSLGLWKLALGAVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL
Ga0302187_104425621	3300031259	Bog	KPWGIFNVLSFGALLVLLVIAGYTGIFLALMTLKI
Ga0265313_102921501	3300031595	Rhizosphere	VVRKPWGIFNVLNVGALLVLLVIAGYTGLFLALMTQKL
Ga0307469_105849241	3300031720	Hardwood Forest Soil	PATTFLIVFPRVPHGRAIGFLVLPLCALAGSFGLWKLAMGAVEKPWGMFNVLSFGALLILLFIAGYTGVFLALMTLQL
Ga0311301_119183152	3300032160	Peatlands Soil	VQKPWGIFNVLNFGALFVLLIIAAYTGLFLALMTLKL
Ga0335078_105309381	3300032805	Soil	ALGAVQKPWGIFNVLCVAALIVLLVIAGYTGVFLALLTLKI
Ga0335078_111338153	3300032805	Soil	VGVVEKPWGLFNFLSFGALMILLVIAAYTGLFLALTALRL
Ga0335080_118238662	3300032828	Soil	GFIVVAVCALLGSYGLWKLALGAVAKPWGIFNVLNMVALFVLLVIAGYTGLFLALMTLKL
Ga0335081_100366849	3300032892	Soil	LALGAVQKPWGIFNVLCVGALIVLLVIAGYTGVFLALLTLKI
Ga0335076_105887932	3300032955	Soil	GAVQKPWGIFNVLCVAALIVLLVIAGYTGVFLALLTLKI
Ga0335077_100157431	3300033158	Soil	IGCIVVPACAVAGSLGLWQLALGAVQKPWGIFNVLCVGALIVLLVIAGYTGVFLALLTLK
Ga0326727_103154061	3300033405	Peat Soil	KLALGAVQKPWGIFNVLNVGALLVLLVIAAYTGLFLALMTLKI
Ga0334854_079843_1_117	3300033829	Soil	AVQRPWGLFNVLNFGALCVLLVVAGYTGVFLALMAARL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080602

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences