NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024041

3300024041: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5



Overview

Basic Information
IMG/M Taxon OID3300024041 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131983 | Gp0256467 | Ga0224539
Sample NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41611474
Sequencing Scaffolds8
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatland Microbial Communities From Stordalen Mire, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000634Metagenome / Metatranscriptome971Y
F000926Metagenome / Metatranscriptome832Y
F002283Metagenome574Y
F002347Metagenome / Metatranscriptome568Y
F009281Metagenome / Metatranscriptome320Y
F018300Metagenome235Y
F031999Metagenome / Metatranscriptome181Y
F036661Metagenome169Y
F040382Metagenome / Metatranscriptome162Y
F046737Metagenome151Y
F080602Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224539_1000291Not Available913Open in IMG/M
Ga0224539_1000515All Organisms → cellular organisms → Bacteria802Open in IMG/M
Ga0224539_1001330All Organisms → cellular organisms → Bacteria → Acidobacteria646Open in IMG/M
Ga0224539_1001829Not Available603Open in IMG/M
Ga0224539_1003357Not Available530Open in IMG/M
Ga0224539_1003912All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
Ga0224539_1003949Not Available511Open in IMG/M
Ga0224539_1004006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224539_1000291Ga0224539_10002912F046737RILTSIKKVLFFIALATVLAACDTQQGMMHGGGSTMNMGNWNWVGILIGLIIGFLIGYLVASRRR
Ga0224539_1000515Ga0224539_10005151F000926LHGNTVARLEVLVRTAVFKSANALVGWLLQQAADRIDAQYQPKARQTRKSRETIGVQGIFGRFQLQRDYYYHEGKDQGHYPVDAALGLEVGYTPALAKLICLEGADEPTYQKAERHLEQTGGICVSSRQ
Ga0224539_1000515Ga0224539_10005152F002347MNQSTKTHLLQQIAGIPAMELGKLSRYTFKERSNASGPYHKLQRWQDGKNHTRYVSADELPAVQTALAGYAQFRQLTEQYADLVIEETRQHIAGSKKNQFRPESSSPRKKKSSN
Ga0224539_1001330Ga0224539_10013301F000634LPATSSKATIKILYGEDDEQVLAAQAAEMKKAGHHVTPAIGRQGVMEVLRRDAFDLVILGSTLSKDDRHHLPYMVKKSHEGTKVLVMAAGHHNEVDATIDANTSMQFVLEKIARLLAEQSVSA
Ga0224539_1001676Ga0224539_10016761F031999MTNTKFVVKVNLTGARSVEYVQRVDRTPILTTTNRK
Ga0224539_1001829Ga0224539_10018291F002283MGILINIQVLPPNQSLKLTEPAVDDFARAKQPVTIGQDLSRADWIPSLRHFVAAA
Ga0224539_1001829Ga0224539_10018292F018300KLTEIAVDDFLRAKQPVTIGLDLARADWIPSLRHFVAAA
Ga0224539_1003357Ga0224539_10033571F036661GGGELSTMSALDTEYLTAPALAERIALVRAQLAPIRSRTALLDSYRRESLWRLAGPAQTAGSATEVLDQAYALRWLELEPDKSIAEPQFDPSFEQGDG
Ga0224539_1003912Ga0224539_10039122F040382MNNSSLIRNRSIRVLAFVLASSLAGFASVIGSFDRSFQVNG
Ga0224539_1003949Ga0224539_10039491F009281ASGVPKSYGKLVTAFADSIGTGLVFEDAEGVIRFVSITGMKEGELARYQTTPTRGGIPKSYGHLVSAVVNHGTTGLIFEDASGVIRFVTLTGETERELPRN
Ga0224539_1004006Ga0224539_10040061F080602ISAVQRPFGILNALSVGALMVVLIIATYTGLFLAFIAIKL
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